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Volumn 2016-May, Issue , 2016, Pages 112-119

Accelerated visualization of transparent molecular surfaces in molecular dynamics

Author keywords

I.3.5 Computational Geometry and Object Modeling Boundary representations; I.3.7 Three Dimensional Graphics and Realism Visible line surface algorithms

Indexed keywords

COMPUTATIONAL GEOMETRY; COMPUTER GRAPHICS; MOLECULES; THREE DIMENSIONAL COMPUTER GRAPHICS; VISUALIZATION;

EID: 84973644945     PISSN: 21658765     EISSN: 21658773     Source Type: Conference Proceeding    
DOI: 10.1109/PACIFICVIS.2016.7465258     Document Type: Conference Paper
Times cited : (15)

References (35)
  • 2
    • 35948992997 scopus 로고    scopus 로고
    • Grid with a view: Optimal texturing for perception of layered surface shape
    • A. Bair and D. H. House. Grid with a view: Optimal texturing for perception of layered surface shape. IEEE Trans. Vis. Comput. Graph., 13(6):1656-1663, 2007.
    • (2007) IEEE Trans. Vis. Comput. Graph. , vol.13 , Issue.16 , pp. 1656-1663
    • Bair, A.1    House, D.H.2
  • 3
    • 67749114418 scopus 로고    scopus 로고
    • Order independent transparency with dual depth peeling
    • L. Bavoil and K. Myers. Order independent transparency with dual depth peeling. NVIDIA OpenGL SDK, pages 1-12, 2008.
    • (2008) NVIDIA OpenGL SDK , pp. 1-12
    • Bavoil, L.1    Myers, K.2
  • 4
    • 84861327843 scopus 로고    scopus 로고
    • Ambient occlusion opacity mapping for visualization of internal molecular structure
    • D. Borland. Ambient occlusion opacity mapping for visualization of internal molecular structure. Journal of WSCG, 19(1):17-24, 2011.
    • (2011) Journal of WSCG , vol.19 , Issue.11 , pp. 17-24
    • Borland, D.1
  • 6
    • 0000538815 scopus 로고
    • Analytical molecular surface calculation
    • M. L. Connolly. Analytical molecular surface calculation. Journal of Applied Crystallography, 16(5):548-558, 1983.
    • (1983) Journal of Applied Crystallography , vol.16 , Issue.15 , pp. 548-558
    • Connolly, M.L.1
  • 7
    • 85053919378 scopus 로고
    • Measuring proteins and voids in proteins
    • H. Edelsbrunner, M. A. Facello, P. Fu, and J. Liang. Measuring proteins and voids in proteins. In HICSS (5), volume 5, pages 256-264, 1995.
    • (1995) HICSS , vol.5 , Issue.5 , pp. 256-264
    • Edelsbrunner, H.1    Facello, M.A.2    Fu, P.3    Liang, J.4
  • 9
    • 77749332496 scopus 로고    scopus 로고
    • Interactive order-independent transparency
    • C. Everitt. Interactive order-independent transparency. White paper, nVIDIA, 2(6):7, 2001.
    • (2001) White Paper, NVIDIA , vol.2 , Issue.16 , pp. 7
    • Everitt, C.1
  • 11
    • 84860995211 scopus 로고    scopus 로고
    • Exploring protein dynamics space: The Dynasome as the missing link between protein structure and function
    • U. Hensen, T. Meyer, J. Haas, R. Rex, G. Vriend, and H. Grubmüller. Exploring protein dynamics space: The Dynasome as the missing link between protein structure and function. PLoS ONE, 7(5), 2012.
    • (2012) PLoS ONE , vol.7 , Issue.15
    • Hensen, U.1    Meyer, T.2    Haas, J.3    Rex, R.4    Vriend, G.5    Grubmüller, H.6
  • 12
    • 28844484671 scopus 로고
    • Solving quartics and cubics for graphics
    • Morgan Kaufmann
    • D. Herbison-Evans. Solving quartics and cubics for graphics. In Graphics Gems V. Morgan Kaufmann, 1995.
    • (1995) Graphics Gems V.
    • Herbison-Evans, D.1
  • 15
    • 70350635971 scopus 로고    scopus 로고
    • Interactive visualization of molecular surface dynamics
    • M. Krone, K. Bidmon, and T. Ertl. Interactive visualization of molecular surface dynamics. IEEE Trans. Vis. Comput. Graph., 15(6):1391-1398, 2009.
    • (2009) IEEE Trans. Vis. Comput. Graph. , vol.15 , Issue.16 , pp. 1391-1398
    • Krone, M.1    Bidmon, K.2    Ertl, T.3
  • 18
    • 84904419465 scopus 로고    scopus 로고
    • Line integral convolution for real-time illustration of molecular surface shape and salient regions
    • K. Lawonn, M. Krone, T. Ertl, and B. Preim. Line integral convolution for real-time illustration of molecular surface shape and salient regions. Comput. Graph. Forum, 33(3):181-190, 2014.
    • (2014) Comput. Graph. Forum , vol.33 , Issue.13 , pp. 181-190
    • Lawonn, K.1    Krone, M.2    Ertl, T.3    Preim, B.4
  • 19
    • 84899908873 scopus 로고    scopus 로고
    • Exploring cavity dynamics in biomolecular systems
    • N. Lindow, D. Baum, A. Bondar, and H. Hege. Exploring cavity dynamics in biomolecular systems. BMC Bioinformatics, 14:S5, 2013.
    • (2013) BMC Bioinformatics , vol.14 , pp. S5
    • Lindow, N.1    Baum, D.2    Bondar, A.3    Hege, H.4
  • 21
    • 0024701480 scopus 로고
    • Transparency and antialiasing algorithms implemented with the virtual pixel maps technique
    • A. Mammen. Transparency and antialiasing algorithms implemented with the virtual pixel maps technique. Computer Graphics and Applications, IEEE, 9(4):43-55, 1989.
    • (1989) Computer Graphics and Applications, IEEE , vol.9 , Issue.14 , pp. 43-55
    • Mammen, A.1
  • 28
    • 0030040323 scopus 로고    scopus 로고
    • Reduced surface: An efficient way to compute molecular surfaces
    • M. F. Sanner, A. J. Olson, and J. C. Spehner. Reduced surface: an efficient way to compute molecular surfaces. Biopolymers, 38(3):305-320, 1996.
    • (1996) Biopolymers , vol.38 , Issue.13 , pp. 305-320
    • Sanner, M.F.1    Olson, A.J.2    Spehner, J.C.3
  • 29
    • 1942531109 scopus 로고
    • Algorithm 112: Position of point relative to polygon
    • M. Shimrat. Algorithm 112: position of point relative to polygon. Communications of the ACM, 5(8):434, 1962.
    • (1962) Communications of the ACM , vol.5 , Issue.18 , pp. 434
    • Shimrat, M.1
  • 31
    • 33845621535 scopus 로고    scopus 로고
    • Ambient occlusion and edge cueing for enhancing real time molecular visualization
    • M. Tarini, P. Cignoni, and C. Montani. Ambient occlusion and edge cueing for enhancing real time molecular visualization. IEEE Trans. Vis. Comput. Graph., 12(5):1237-1244, 2006.
    • (2006) IEEE Trans. Vis. Comput. Graph. , vol.12 , Issue.15 , pp. 1237-1244
    • Tarini, M.1    Cignoni, P.2    Montani, C.3
  • 32
    • 0029968922 scopus 로고    scopus 로고
    • The contour-buildup algorithm to calculate the analytical molecular surface
    • M. Totrov and R. Abagyan. The contour-buildup algorithm to calculate the analytical molecular surface. Journal of structural biology, 116(1):138-143, 1996.
    • (1996) Journal of Structural Biology , vol.116 , Issue.11 , pp. 138-143
    • Totrov, M.1    Abagyan, R.2
  • 34
    • 84928881205 scopus 로고    scopus 로고
    • K+-buffer: An efficient, memory-friendly and dynamic k-buffer framework
    • A.-A. Vasilakis, G. Papaioannou, and I. Fudos. k+-buffer: an efficient, memory-friendly and dynamic k-buffer framework. IEEE Trans. Vis. Comput. Graph., 21(6):688-700, 2015.
    • (2015) IEEE Trans. Vis. Comput. Graph. , vol.21 , Issue.16 , pp. 688-700
    • Vasilakis, A.-A.1    Papaioannou, G.2    Fudos, I.3
  • 35
    • 77955971155 scopus 로고    scopus 로고
    • Real-time concurrent linked list construction on the GPU
    • J. C. Yang, J. Hensley, H. Grün, and N. Thibieroz. Real-time concurrent linked list construction on the GPU. Computer Graphics Forum, 29(4):1297-1304, 2010.
    • (2010) Computer Graphics Forum , vol.29 , Issue.14 , pp. 1297-1304
    • Yang, J.C.1    Hensley, J.2    Grün, H.3    Thibieroz, N.4


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.