-
1
-
-
0036187036
-
Three-dimensional structure of the apoptosome: Implications for assembly, procaspase-9 binding, and activation
-
Acehan, D., Jiang, X., Morgan, D.G., Heuser, J.E., Wang, X., Akey, C.W., Three-dimensional structure of the apoptosome: Implications for assembly, procaspase-9 binding, and activation. Mol. Cell 9 (2002), 423–432.
-
(2002)
Mol. Cell
, vol.9
, pp. 423-432
-
-
Acehan, D.1
Jiang, X.2
Morgan, D.G.3
Heuser, J.E.4
Wang, X.5
Akey, C.W.6
-
2
-
-
84994830719
-
-
Identification of a nonsense mutation in APAF1 that is causal for a decrease in reproductive efficiency in dairy cattle. Poster P0555 (Abstr.) in Plant and Animal Genome XX Meeting, San Diego, CA. Accessed May 23, 2016.
-
Adams, H. A., T. Sonstegard, P. M. VanRaden, D. J. Null, C. P. Van Tassell, D. M. Larkin, and H. A. Lewin. 2012. Identification of a nonsense mutation in APAF1 that is causal for a decrease in reproductive efficiency in dairy cattle. Poster P0555 (Abstr.) in Plant and Animal Genome XX Meeting, San Diego, CA. Accessed May 23, 2016. https://pag.confex.com/pag/xx/webprogram/Paper3932.html.
-
(2012)
-
-
Adams, H.A.1
Sonstegard, T.2
VanRaden, P.M.3
Null, D.J.4
Van Tassell, C.P.5
Larkin, D.M.6
Lewin, H.A.7
-
3
-
-
8844257397
-
Morphological variation of “complex vertebral malformation” in Holstein calves
-
Agerholm, J.S., Bendixen, C., Ambjerg, J., Andersen, O., Morphological variation of “complex vertebral malformation” in Holstein calves. J. Vet. Diagn. Invest 16 (2004), 548–553.
-
(2004)
J. Vet. Diagn. Invest
, vol.16
, pp. 548-553
-
-
Agerholm, J.S.1
Bendixen, C.2
Ambjerg, J.3
Andersen, O.4
-
4
-
-
0035406096
-
Complex vertebral malformation in Holstein calves
-
Agerholm, J.S., Bendixen, C., Andersen, O., Ambjerg, J., Complex vertebral malformation in Holstein calves. J. Vet. Diagn. Invest 13 (2001), 283–289.
-
(2001)
J. Vet. Diagn. Invest
, vol.13
, pp. 283-289
-
-
Agerholm, J.S.1
Bendixen, C.2
Andersen, O.3
Ambjerg, J.4
-
5
-
-
9144232912
-
UniProt: The Universal Protein knowledgebase
-
Apweiler, R., Bairoch, A., Wu, C.H., Barker, W.C., Boeckmann, B., Ferro, S., Gasteiger, E., Huang, H., Lopez, R., Magrane, M., Martin, M.J., Natale, D.A., O'Donovan, C., Redaschi, N., Yeh, L.S., UniProt: The Universal Protein knowledgebase. Nucleic Acids Res 32 (2004), D115–D119.
-
(2004)
Nucleic Acids Res
, vol.32
, pp. D115-D119
-
-
Apweiler, R.1
Bairoch, A.2
Wu, C.H.3
Barker, W.C.4
Boeckmann, B.5
Ferro, S.6
Gasteiger, E.7
Huang, H.8
Lopez, R.9
Magrane, M.10
Martin, M.J.11
Natale, D.A.12
O'Donovan, C.13
Redaschi, N.14
Yeh, L.S.15
-
6
-
-
78651286166
-
The Mouse Genome Database (MGD): Premier model organism resource for mammalian genomics and genetics
-
Blake, J.A., Bult, C.J., Kadin, J.A., Richardson, J.E., Eppig, J.T., the Mouse Genome Database Group. The Mouse Genome Database (MGD): Premier model organism resource for mammalian genomics and genetics. Nucleic Acids Res 39:Suppl. 1 (2011), D842–D848.
-
(2011)
Nucleic Acids Res
, vol.39
, pp. D842-D848
-
-
Blake, J.A.1
Bult, C.J.2
Kadin, J.A.3
Richardson, J.E.4
Eppig, J.T.5
-
7
-
-
0032544449
-
Apaf1 (CED-4 homolog) regulates programmed cell death in mammalian development
-
Cecconi, F., Alvarez-Bolado, G., Meyer, B.I., Roth, K.A., Gruss, P., Apaf1 (CED-4 homolog) regulates programmed cell death in mammalian development. Cell 94 (1998), 727–737.
-
(1998)
Cell
, vol.94
, pp. 727-737
-
-
Cecconi, F.1
Alvarez-Bolado, G.2
Meyer, B.I.3
Roth, K.A.4
Gruss, P.5
-
8
-
-
84865578249
-
A deletion in the bovine FANCI gene compromises fertility by causing fetal death and brachyspina
-
Charlier, C., Agerholm, J.S., Coppieters, W., Karlskov-Mortensen, P., Li, W., de Jong, G., Fasquelle, C., Karim, L., Cirera, S., Cambisano, N., Ahariz, N., Mullaart, E., Georges, M., Fredholm, M., A deletion in the bovine FANCI gene compromises fertility by causing fetal death and brachyspina. PLoS One, 7, 2012, e43085.
-
(2012)
PLoS One
, vol.7
, pp. e43085
-
-
Charlier, C.1
Agerholm, J.S.2
Coppieters, W.3
Karlskov-Mortensen, P.4
Li, W.5
de Jong, G.6
Fasquelle, C.7
Karim, L.8
Cirera, S.9
Cambisano, N.10
Ahariz, N.11
Mullaart, E.12
Georges, M.13
Fredholm, M.14
-
9
-
-
84905483050
-
Whole-genome sequencing of 234 bulls facilitates mapping of monogenic and complex traits in cattle
-
Daetwyler, H.D., Capitan, A., Pausch, H., Stothard, P., van Binsbergen, R., Brondum, R.F., Liao, X., Djari, A., Rodriguez, S.C., Grohs, C., Esquerre, D., Bouchez, O., Rossignol, M.N., Klopp, C., Rocha, D., Fritz, S., Eggen, A., Bowman, P.J., Coote, D., Chamberlain, A.J., Anderson, C., VanTassell, C.P., Hulsegge, I., Goddard, M.E., Guldbrandtsen, B., Lund, M.S., Veerkamp, R.F., Boichard, D.A., Fries, R., Hayes, B.J., Whole-genome sequencing of 234 bulls facilitates mapping of monogenic and complex traits in cattle. Nat. Genet 46 (2014), 858–865.
-
(2014)
Nat. Genet
, vol.46
, pp. 858-865
-
-
Daetwyler, H.D.1
Capitan, A.2
Pausch, H.3
Stothard, P.4
van Binsbergen, R.5
Brondum, R.F.6
Liao, X.7
Djari, A.8
Rodriguez, S.C.9
Grohs, C.10
Esquerre, D.11
Bouchez, O.12
Rossignol, M.N.13
Klopp, C.14
Rocha, D.15
Fritz, S.16
Eggen, A.17
Bowman, P.J.18
Coote, D.19
Chamberlain, A.J.20
Anderson, C.21
VanTassell, C.P.22
Hulsegge, I.23
Goddard, M.E.24
Guldbrandtsen, B.25
Lund, M.S.26
Veerkamp, R.F.27
Boichard, D.A.28
Fries, R.29
Hayes, B.J.30
more..
-
10
-
-
84878762327
-
Detection of haplotypes associated with prenatal death in dairy cattle and identification of deleterious mutations in GART, SHBG and SLC37A2
-
10.1371/journal.pone.0065550
-
Fritz, S., Capitan, A., Djari, A., Rodriguez, S.C., Barbat, A., Baur, A., Grohs, C., Weiss, B., Boussaha, M., Esquerré, D., Klopp, C., Rocha, D., Boichard, D., Detection of haplotypes associated with prenatal death in dairy cattle and identification of deleterious mutations in GART, SHBG and SLC37A2. PLoS One, 8, 2013, e65550. 10.1371/journal.pone.0065550.
-
(2013)
PLoS One
, vol.8
, pp. e65550.
-
-
Fritz, S.1
Capitan, A.2
Djari, A.3
Rodriguez, S.C.4
Barbat, A.5
Baur, A.6
Grohs, C.7
Weiss, B.8
Boussaha, M.9
Esquerré, D.10
Klopp, C.11
Rocha, D.12
Boichard, D.13
-
11
-
-
0035859915
-
Apaf-1 deficiency and neural tube closure defects are found in fog mice
-
Honarpour, N., Gilbert, S.L., Lahn, B.T., Wang, X., Herz, J., Apaf-1 deficiency and neural tube closure defects are found in fog mice. Proc. Natl. Acad. Sci. USA 98 (2001), 9683–9687.
-
(2001)
Proc. Natl. Acad. Sci. USA
, vol.98
, pp. 9683-9687
-
-
Honarpour, N.1
Gilbert, S.L.2
Lahn, B.T.3
Wang, X.4
Herz, J.5
-
12
-
-
84893722575
-
A 660-Kb deletion with antagonistic effects on fertility and milk production segregates at high frequency in Nordic Red Cattle: Additional evidence for the common occurrence of balancing selection in livestock
-
Kadri, N.K., Sahana, G., Charlier, C., Iso-Touru, T., Guldbrandtsen, B., Karim, L., Nielsen, U.S., Panitz, F., Aamand, G.P., Schulman, N., Georges, M., Vilkki, J., Lund, M.S., Druet, T., A 660-Kb deletion with antagonistic effects on fertility and milk production segregates at high frequency in Nordic Red Cattle: Additional evidence for the common occurrence of balancing selection in livestock. PLoS Genet, 10, 2014, e1004049.
-
(2014)
PLoS Genet
, vol.10
, pp. e1004049
-
-
Kadri, N.K.1
Sahana, G.2
Charlier, C.3
Iso-Touru, T.4
Guldbrandtsen, B.5
Karim, L.6
Nielsen, U.S.7
Panitz, F.8
Aamand, G.P.9
Schulman, N.10
Georges, M.11
Vilkki, J.12
Lund, M.S.13
Druet, T.14
-
13
-
-
84861220058
-
Whole-genome resequencing of two elite sires for the detection of haplotypes under selection in dairy cattle
-
Larkin, D.M., Daetwyler, H.D., Hernandez, A.G., Wright, C.L., Hetrick, L.A., Boucek, L., Bachman, S.L., Band, M.R., Akraiko, T.V., Cohen-Zinder, M., Thimmapuram, J., Macleod, I.M., Harkins, T.T., McCague, J.E., Goddard, M.E., Hayes, B.J., Lewin, H.A., Whole-genome resequencing of two elite sires for the detection of haplotypes under selection in dairy cattle. Proc. Natl. Acad. Sci. USA 109 (2012), 7693–7698.
-
(2012)
Proc. Natl. Acad. Sci. USA
, vol.109
, pp. 7693-7698
-
-
Larkin, D.M.1
Daetwyler, H.D.2
Hernandez, A.G.3
Wright, C.L.4
Hetrick, L.A.5
Boucek, L.6
Bachman, S.L.7
Band, M.R.8
Akraiko, T.V.9
Cohen-Zinder, M.10
Thimmapuram, J.11
Macleod, I.M.12
Harkins, T.T.13
McCague, J.E.14
Goddard, M.E.15
Hayes, B.J.16
Lewin, H.A.17
-
14
-
-
67650711615
-
SOAP2: An improved ultrafast tool for short read alignment
-
Li, R., Yu, C., Li, Y., Lam, T.W., Yiu, S.M., Kristiansen, K., Wang, J., SOAP2: An improved ultrafast tool for short read alignment. Bioinformatics 25 (2009), 1966–1967.
-
(2009)
Bioinformatics
, vol.25
, pp. 1966-1967
-
-
Li, R.1
Yu, C.2
Li, Y.3
Lam, T.W.4
Yiu, S.M.5
Kristiansen, K.6
Wang, J.7
-
15
-
-
0035379705
-
Reproductive loss in high-producing dairy cattle: Where will it end?
-
Lucy, M.C., Reproductive loss in high-producing dairy cattle: Where will it end?. J. Dairy Sci 84 (2001), 1277–1293.
-
(2001)
J. Dairy Sci
, vol.84
, pp. 1277-1293
-
-
Lucy, M.C.1
-
16
-
-
84899789226
-
Bovine exome sequence analysis and targeted SNP genotyping of recessive fertility defects BH1, HH2, and HH3 reveal a putative causative mutation in SMC2 for HH3
-
10.1371/journal.pone.0092769
-
McClure, M.C., Bickhart, D., Null, D., VanRaden, P., Xu, L., Wiggans, G., Liu, G., Schroeder, S., Glasscock, J., Armstrong, J., Cole, J.B., VanTassell, C.P., Sonstegard, T.S., Bovine exome sequence analysis and targeted SNP genotyping of recessive fertility defects BH1, HH2, and HH3 reveal a putative causative mutation in SMC2 for HH3. PLoS One, 9, 2014, e92769. 10.1371/journal.pone.0092769.
-
(2014)
PLoS One
, vol.9
, pp. e92769.
-
-
McClure, M.C.1
Bickhart, D.2
Null, D.3
VanRaden, P.4
Xu, L.5
Wiggans, G.6
Liu, G.7
Schroeder, S.8
Glasscock, J.9
Armstrong, J.10
Cole, J.B.11
VanTassell, C.P.12
Sonstegard, T.S.13
-
17
-
-
23944433348
-
Localization of Apaf1 gene expression in the early development of the mouse by means of in situ reverse transcriptase-polymerase chain reaction
-
Müller, M., Berger, J., Gersdorff, N., Cecconi, F., Herken, R., Quondamatteo, F., Localization of Apaf1 gene expression in the early development of the mouse by means of in situ reverse transcriptase-polymerase chain reaction. Dev. Dyn 234 (2005), 215–221.
-
(2005)
Dev. Dyn
, vol.234
, pp. 215-221
-
-
Müller, M.1
Berger, J.2
Gersdorff, N.3
Cecconi, F.4
Herken, R.5
Quondamatteo, F.6
-
18
-
-
84994836716
-
-
GeneSeek genomic profiler for dairy cattle. Accessed November 2013.
-
Neogen Corporation. 2013. GeneSeek genomic profiler for dairy cattle. Accessed November 2013. http://www.neogen.com/Genomics/pdf/Slicks/GGP-LD_Dairy.pdf.
-
(2013)
-
-
-
19
-
-
84862548489
-
Factors associated with frequency of abortions recorded through Dairy Herd Improvement test plans
-
Norman, H.D., Miller, R.H., Wright, J.R., Hutchison, J.L., Olson, K.M., Factors associated with frequency of abortions recorded through Dairy Herd Improvement test plans. J. Dairy Sci 95 (2012), 4074–4084.
-
(2012)
J. Dairy Sci
, vol.95
, pp. 4074-4084
-
-
Norman, H.D.1
Miller, R.H.2
Wright, J.R.3
Hutchison, J.L.4
Olson, K.M.5
-
20
-
-
9744254593
-
Association of markers in the bovine CAPN1 gene with meat tenderness in large crossbred populations that sample influential industry sires
-
Page, B.T., Casas, E., Quaas, R.L., Thallman, R.M., Wheeler, T.L., Shackelford, S.D., Koohmaraie, M., White, S.N., Bennett, G.L., Keele, J.W., Dikeman, T.E., Smith, T.P., Association of markers in the bovine CAPN1 gene with meat tenderness in large crossbred populations that sample influential industry sires. J. Anim. Sci 82 (2004), 3474–3481.
-
(2004)
J. Anim. Sci
, vol.82
, pp. 3474-3481
-
-
Page, B.T.1
Casas, E.2
Quaas, R.L.3
Thallman, R.M.4
Wheeler, T.L.5
Shackelford, S.D.6
Koohmaraie, M.7
White, S.N.8
Bennett, G.L.9
Keele, J.W.10
Dikeman, T.E.11
Smith, T.P.12
-
21
-
-
34247345833
-
The apoptosome: Signaling platform of cell death
-
Riedl, S.J., Salvesen, G.S., The apoptosome: Signaling platform of cell death. Nat. Rev. Mol. Cell Biol 8 (2007), 405–413.
-
(2007)
Nat. Rev. Mol. Cell Biol
, vol.8
, pp. 405-413
-
-
Riedl, S.J.1
Salvesen, G.S.2
-
22
-
-
0021464753
-
Detection and prevalence of UMP synthase deficiency among dairy cattle
-
Robinson, J.L., Dombrowski, D.B., Harpestad, G.W., Shanks, R.D., Detection and prevalence of UMP synthase deficiency among dairy cattle. J. Hered 75 (1984), 277–280.
-
(1984)
J. Hered
, vol.75
, pp. 277-280
-
-
Robinson, J.L.1
Dombrowski, D.B.2
Harpestad, G.W.3
Shanks, R.D.4
-
23
-
-
0024763833
-
Embryonic mortality attributed to inherited deficiency of uridine monophosphate synthase
-
Shanks, R.D., Robinson, J.L., Embryonic mortality attributed to inherited deficiency of uridine monophosphate synthase. J. Dairy Sci 72 (1989), 3035–3039.
-
(1989)
J. Dairy Sci
, vol.72
, pp. 3035-3039
-
-
Shanks, R.D.1
Robinson, J.L.2
-
24
-
-
33646184198
-
Major advances in determining appropriate selection goals
-
Shook, G.E., Major advances in determining appropriate selection goals. J. Dairy Sci 89 (2006), 1349–1361.
-
(2006)
J. Dairy Sci
, vol.89
, pp. 1349-1361
-
-
Shook, G.E.1
-
25
-
-
84872803971
-
Identification of a nonsense mutation in CWC15 associated with decreased reproductive efficiency in Jersey cattle
-
10.1371/journal.pone.0054872
-
Sonstegard, T.S., Cole, J.B., VanRaden, P.M., Van Tassell, C.P., Null, D.J., Schroeder, S.G., Bickhart, D., McClure, M.C., Identification of a nonsense mutation in CWC15 associated with decreased reproductive efficiency in Jersey cattle. PLoS ONE, 8, 2013, e54872. 10.1371/journal.pone.0054872.
-
(2013)
PLoS ONE
, vol.8
, pp. e54872.
-
-
Sonstegard, T.S.1
Cole, J.B.2
VanRaden, P.M.3
Van Tassell, C.P.4
Null, D.J.5
Schroeder, S.G.6
Bickhart, D.7
McClure, M.C.8
-
26
-
-
0035071957
-
A new statistical method for haplotype reconstruction from population data
-
Stephens, M., Smith, N.J., Donnelly, P., A new statistical method for haplotype reconstruction from population data. Am. J. Hum. Genet 68 (2001), 978–989.
-
(2001)
Am. J. Hum. Genet
, vol.68
, pp. 978-989
-
-
Stephens, M.1
Smith, N.J.2
Donnelly, P.3
-
27
-
-
84862516844
-
Reporting of haplotypes with recessive effects on fertility
-
a
-
VanRaden, P.M., Null, D.J., Olson, K.M., Hutchison, J.L., Reporting of haplotypes with recessive effects on fertility. Interbull Bull 44 (2011), 117–121 a.
-
(2011)
Interbull Bull
, vol.44
, pp. 117-121
-
-
VanRaden, P.M.1
Null, D.J.2
Olson, K.M.3
Hutchison, J.L.4
-
28
-
-
82155170576
-
Harmful recessive effects on fertility detected by absence of homozygous haplotypes
-
b
-
VanRaden, P.M., Olson, K.M., Null, D.J., Hutchison, J.L., Harmful recessive effects on fertility detected by absence of homozygous haplotypes. J. Dairy Sci 94 (2011), 6153–6161 b.
-
(2011)
J. Dairy Sci
, vol.94
, pp. 6153-6161
-
-
VanRaden, P.M.1
Olson, K.M.2
Null, D.J.3
Hutchison, J.L.4
-
29
-
-
3242773095
-
Development of a national genetic evaluation for cow fertility
-
VanRaden, P.M., Sanders, A.H., Tooker, M.E., Miller, R.H., Norman, H.D., Kuhn, M.T., Wiggans, G.R., Development of a national genetic evaluation for cow fertility. J. Dairy Sci 87 (2004), 2285–2292.
-
(2004)
J. Dairy Sci
, vol.87
, pp. 2285-2292
-
-
VanRaden, P.M.1
Sanders, A.H.2
Tooker, M.E.3
Miller, R.H.4
Norman, H.D.5
Kuhn, M.T.6
Wiggans, G.R.7
-
30
-
-
77956534324
-
ANNOVAR: Functional annotation of genetic variants from high-throughput sequencing data
-
Wang, K., Li, M., Hakonarson, H., ANNOVAR: Functional annotation of genetic variants from high-throughput sequencing data. Nucleic Acids Res, 38, 2010, e164.
-
(2010)
Nucleic Acids Res
, vol.38
, pp. e164
-
-
Wang, K.1
Li, M.2
Hakonarson, H.3
-
31
-
-
77952031787
-
Selection and management of DNA markers for use in genomic evaluation
-
Wiggans, G.R., Van, P.M., Raden, L.R., Bacheller, R., Tooker, M.E., Hutchison, J.L., Cooper, T.A., Sonstegard, T.S., Selection and management of DNA markers for use in genomic evaluation. J. Dairy Sci 93 (2010), 2287–2292.
-
(2010)
J. Dairy Sci
, vol.93
, pp. 2287-2292
-
-
Wiggans, G.R.1
Van, P.M.2
Raden, L.R.3
Bacheller, R.4
Tooker, M.E.5
Hutchison, J.L.6
Cooper, T.A.7
Sonstegard, T.S.8
-
32
-
-
0032544564
-
Apaf1 is required for mitochondrial pathways of apoptosis and brain development
-
Yoshida, H., Kong, Y.Y., Yoshida, R., Elia, A.J., Hakem, A., Hakem, R., Penninger, J.M., Mak, T.W., Apaf1 is required for mitochondrial pathways of apoptosis and brain development. Cell 94 (1998), 739–750.
-
(1998)
Cell
, vol.94
, pp. 739-750
-
-
Yoshida, H.1
Kong, Y.Y.2
Yoshida, R.3
Elia, A.J.4
Hakem, A.5
Hakem, R.6
Penninger, J.M.7
Mak, T.W.8
|