Efficient suppression of biofilm formation by a nucleic acid aptamer

Pathogens and Disease

Volumn 73, Issue 6, 2015, Pages

  Ning, Yi ^a,b   Cheng, Lijuan ^a,b   Ling, Min ^a   Feng, Xinru ^a   Chen, Lingli ^b   Wu, Minxi ^a   Deng, Le ^a  

^a HUNAN NORMAL UNIVERSITY   (China)

^b HUNAN UNIVERSITY OF CHINESE MEDICINE   (China)

Author keywords

Aptamer; Biofilm; Biomarker; Flagellin; Salmonella choleraesuis; SELEX

Indexed keywords

APTAMER; FLAGELLIN; LIGAND; SINGLE STRANDED DNA; ANTIINFECTIVE AGENT; PROTEIN BINDING;

ARTICLE; ATOMIC FORCE MICROSCOPY; BACTERIAL CELL; BINDING AFFINITY; BIOFILM; CONTROLLED STUDY; DISSOCIATION CONSTANT; ESCHERICHIA COLI; IN VITRO STUDY; MASS SPECTROMETRY; MAXIMUM BINDING CAPACITY; NONHUMAN; PRIORITY JOURNAL; SALMONELLA ENTERICA; SALMONELLA ENTERICA SEROVAR PARATYPHI A; STAPHYLOCOCCUS AUREUS; SYSTEMATIC EVOLUTION OF LIGANDS BY EXPONENTIAL ENRICHMENT APTAMER TECHNIQUE; DRUG EFFECTS; ISOLATION AND PURIFICATION; METABOLISM; MICROSCOPY; PHYSIOLOGY; SALMONELLA;

ANTI-BACTERIAL AGENTS; APTAMERS, NUCLEOTIDE; BIOFILMS; FLAGELLIN; MICROSCOPY; PROTEIN BINDING; SALMONELLA; SELEX APTAMER TECHNIQUE;

EID: 84973434359     PISSN: None     EISSN: 2049632X     Source Type: Journal    
DOI: 10.1093/femspd/ftv034     Document Type: Article

References (27)

1. Abdel-Nour M, Duncan C, Low DE, et al. Biofilms: the stronghold of Legionella pneumophila. Int J Mol Sci 2013;14:21660-75.
2. Allision DG. The biofilm matrix. Biofouling 2003;19:139-50.
3. Bock LC, Griffin LC, Latham JA, et al. Selection of single-stranded DNA molecules that bind and inhibit human thrombin. Nature 1992;355:564-6.
4. Dey AK, Khati M, Tang M, et al. An aptamer that neutralizes R5 strains of human immunodeficiency virus type 1 blocks gp120-CCR5 interaction. J Virol 2005;79:13806-10.
5. Duan YF, Ning Y, Song Y, et al. Fluorescent aptasensor for the determination of Salmonella typhimurium based on a graphene oxide platform. Microchim Acta 2014;181:647-53.
6. Giron JA, Torres AG, Freer E, et al. The flagella of enteropathogenic Escherichia coli mediate adherence to epithelial cells. Mol Microbiol 2002;44:361-79.
7. Hung CS, Bouckaert J, Hung D, et al. Structural basis of tropism of Escherichia coli to the bladder during urinary tract infection. Mol Microbiol 2002;44:903-15.
8. Ito A, May T, Kawata K, et al. Significance of rpoS during maturation of Escherichia coli biofilms. Biotechnol Bioeng 2008;99: 1462-71.
9. Keefe AD, Pai S, Ellington A. Aptamers as therapeutics. Nat Rev Drug Discov 2010;9:537-50.
10. Kim TJ, Young BM, Young GM. Effect of flagellar mutations on Yersinia enterocolitica biofilm formation. Appl Environ Microb 2008;74:5466-74.
11. Ma Q, Yang ZH, Pu MM, et al. Engineering a novel c-di-GMP-binding protein for biofilm dispersal. Environ Microbiol 2011;13:631-42.
12. Ng EW, Shima DT, Calias P, et al. Pegaptanib, a targeted anti-VEGF aptamer for ocular vascular disease. Nat Rev Drug Discov 2006;5:123-32.
13. O'Toole GA, Kolter R. Flagellar and twitching motility are necessary for Pseudomonas aeruginosa biofilm development. Mol Microbiol 1998;30:295-304.
14. Okazawa A, Maeda H, Fukusaki E, et al. In vitro selection of hematoporphyrin binding DNA aptamers. Bioorg Med Chem Lett 2000;10:2653-6.
15. Pratt LA, Kolter R. Genetic analysis of Escherichia coli biofilm formation: roles of flagella, motility, chemotaxis and type I pili. Mol Microbiol 1998;30:285-93.
16. Rendueles O, Kaplan JB, Ghigo JM. Antibiofilm polysaccharides. Environ Microbiol 2012;15:334-46.
17. Sperandio V, Torres AG, Kaper JB. Quorum sensing Escherichia coli regulators B and C (QseBC): a novel two component regulatory system involved in the regulation of flagella and motility by quorum sensing in E. coli. Mol Microbiol 2002;43: 809-21.
18. Tang J, Xie J, Shao N, et al. The DNA aptamers that specifically recognize ricin toxin are selected by two in vitro selection methods. Electrophoresis 2006;27: 1303-11.
19. Wang L, Liu XJ, Zhang Q, et al. Selection of DNA aptamers that bind to four organophosphorus pesticides. Biotechnol Lett 2012;5:869-74.
20. Whitchurch CB, Tolker-Nielsen T, Ragas PC, et al. Extracellular DNA required for bacterial biofilm formation. Science 2002;295:1487.
21. Wood TK, Gonźalez Barrios AF, Herzberg M, et al. Motility influences biofilm architecture in Escherichia coli. Appl Microbiol Biot 2006;72:361-7.
22. Wrzesinski J, Ciesiolka J. Characterization of structure and metal ions specificity of Co2+-binding RNA aptamers. Biochemistry 2005;44:6257-68.
23. Yang M, Peng ZH, Ning Y, et al. Highly specific and cost-efficient detection of Salmonella Paratyphi A combining aptamers with single-walled carbon nanotubes. Sensors 2013;13: 6865-81.
24. Young GM, Smith MJ, Minnich SA, et al. The Yersinia enterocolitica motility master regulatory operon, flhDC, is required for flagellin production, swimming motility, and swarmingmotility. J Bacteriol 1999;181:2823-33.
25. Zhou J, Battig MR, Wang Y. Aptamer-based molecular recognition for biosensor development. Anal Bioanal Chem 2010;398:2471-80.
26. Zhou J, Li H, Li S, et al. Novel dual inhibitory function aptamer-siRNA delivery system for HIV-1 therapy. Mol Ther 2008;16:1481-9.
27. Zogaj X, Bokranz W, Nimtz M, et al. Production of cellulose and curli fimbriae by members of the family enterobacteriaceae isolated from the human gastrointestinal tract. Infect Immun 2003;71:4151-8.