-
1
-
-
84862568816
-
HapCompass: A fast cycle basis algorithm for accurate haplotype assembly of sequence data
-
Aguiar, D. and Istrail, S. (2012) HapCompass: a fast cycle basis algorithm for accurate haplotype assembly of sequence data. J. Comput. Biol., 19, 577-590.
-
(2012)
J. Comput. Biol
, vol.19
, pp. 577-590
-
-
Aguiar, D.1
Istrail, S.2
-
2
-
-
49549099085
-
HapCUT: An efficient and accurate algorithm for the haplotype assembly problem
-
Bansal, V. and Bafna, V. (2008) HapCUT: an efficient and accurate algorithm for the haplotype assembly problem. Bioinformatics, 24, i153-i159.
-
(2008)
Bioinformatics
, vol.24
, pp. i153-i159
-
-
Bansal, V.1
Bafna, V.2
-
3
-
-
84948972672
-
On the fixed parameter tractability and approximability of the minimum error correction problem
-
In: Ferdinando, C. et al. (eds)
-
Bonizzoni, P. et al. (2015) On the fixed parameter tractability and approximability of the minimum error correction problem. In: Ferdinando, C. et al. (eds) CPM, volume 9133 of LNCS, Springer International Publishing, pp. 100-113.
-
(2015)
CPM, Volume 9133 of LNCS, Springer International Publishing
, pp. 100-113
-
-
Bonizzoni, P.1
-
4
-
-
80053019891
-
Haplotype phasing: Existing methods and new developments
-
Browning, S. and Browning, B. (2011) Haplotype phasing: existing methods and new developments. Nat. Rev. Genet., 12, 703-714.
-
(2011)
Nat. Rev. Genet
, vol.12
, pp. 703-714
-
-
Browning, S.1
Browning, B.2
-
5
-
-
84864518203
-
Pacific biosciences sequencing technology for genotyping and variation discovery in human data
-
Carneiro, M. et al. (2012) Pacific biosciences sequencing technology for genotyping and variation discovery in human data. BMC Genomics, 13, 375.
-
(2012)
BMC Genomics
, vol.13
, pp. 375
-
-
Carneiro, M.1
-
6
-
-
84880975163
-
Exact algorithms for haplotype assembly from wholegenome sequence data
-
Chen, Z.-Z. et al. (2013) Exact algorithms for haplotype assembly from wholegenome sequence data. Bioinformatics, 29, 1938-1945.
-
(2013)
Bioinformatics
, vol.29
, pp. 1938-1945
-
-
Chen, Z.-Z.1
-
7
-
-
36549019057
-
The complexity of the single individual SNP haplotyping problem
-
Cilibrasi, R. et al. (2007) The complexity of the single individual SNP haplotyping problem. Algorithmica, 49, 13-36.
-
(2007)
Algorithmica
, vol.49
, pp. 13-36
-
-
Cilibrasi, R.1
-
8
-
-
79955483667
-
A framework for variation discovery and genotyping using next-generation DNA sequencing data
-
DePristo, M. et al. (2011) A framework for variation discovery and genotyping using next-generation DNA sequencing data. Nat. Genet., 43, 491-498.
-
(2011)
Nat. Genet
, vol.43
, pp. 491-498
-
-
DePristo, M.1
-
9
-
-
77958050877
-
-
In: Li, L. et al. (eds) BCB. ACM, New York, NY, USA
-
Duitama, J. et al. (2010) ReFHap: a reliable and fast algorithm for single individual haplotyping. In: Li, L. et al. (eds) BCB. ACM, New York, NY, USA, pp. 160-169.
-
(2010)
ReFHap: A Reliable and Fast Algorithm for Single Individual Haplotyping
, pp. 160-169
-
-
Duitama, J.1
-
10
-
-
84858386071
-
Fosmid-based whole genome haplotyping of a HapMap trio child: Evaluation of single individual haplotyping techniques
-
Duitama, J. et al. (2012) Fosmid-based whole genome haplotyping of a HapMap trio child: evaluation of single individual haplotyping techniques. Nucleic Acids Res., 40, 2041-2053.
-
(2012)
Nucleic Acids Res
, vol.40
, pp. 2041-2053
-
-
Duitama, J.1
-
11
-
-
4544326903
-
Opportunities for combinatorial optimization in computational biology
-
Greenberg, H. et al. (2004) Opportunities for combinatorial optimization in computational biology. INFORMS J. Comput., 16, 211-231.
-
(2004)
INFORMS J. Comput
, vol.16
, pp. 211-231
-
-
Greenberg, H.1
-
12
-
-
77954211441
-
Optimal algorithms for haplotype assembly from wholegenome sequence data
-
He, D. et al. (2010) Optimal algorithms for haplotype assembly from wholegenome sequence data. Bioinformatics, 26, i183-i190.
-
(2010)
Bioinformatics
, vol.26
, pp. i183-i190
-
-
He, D.1
-
13
-
-
84873572391
-
Hap-seq: An optimal algorithm for haplotype phasing with imputation using sequencing data
-
He, D. et al. (2013) Hap-seq: an optimal algorithm for haplotype phasing with imputation using sequencing data. J. Comput. Biol., 20, 80-92.
-
(2013)
J. Comput. Biol
, vol.20
, pp. 80-92
-
-
He, D.1
-
14
-
-
84926472171
-
Improved data analysis for the minion nanopore sequencer
-
Jain, M. et al. (2015) Improved data analysis for the minion nanopore sequencer. Nat. Methods, 12, 351-356.
-
(2015)
Nat. Methods
, vol.12
, pp. 351-356
-
-
Jain, M.1
-
16
-
-
84907021664
-
Probabilistic single-individual haplotyping
-
Kuleshov, V. (2014) Probabilistic single-individual haplotyping. Bioinformatics, 30, i379-i385.
-
(2014)
Bioinformatics
, vol.30
, pp. i379-i385
-
-
Kuleshov, V.1
-
17
-
-
84898654757
-
Whole-genome haplotyping using long reads and statistical methods
-
Kuleshov, V. et al. (2014) Whole-genome haplotyping using long reads and statistical methods. Nat. Biotechnol., 32, 261, 266.
-
(2014)
Nat. Biotechnol
, vol.32
, pp. 261-266
-
-
Kuleshov, V.1
-
18
-
-
84943255398
-
SNPs problems, complexity, and algorithms
-
In: Auf der Heide, F. M. (ed) Springer Berlin Heidelberg
-
Lancia, G. et al. (2001) SNPs problems, complexity, and algorithms. In: auf der Heide, F. M. (ed) ESA, volume 2161 of LNCS, Springer Berlin Heidelberg, pp. 182-193.
-
(2001)
ESA, Volume 2161 of LNCS
, pp. 182-193
-
-
Lancia, G.1
-
19
-
-
0036514657
-
Algorithmic strategies for the single nucleotide polymorphism haplotype assembly problem
-
Lippert, R. et al. (2002) Algorithmic strategies for the single nucleotide polymorphism haplotype assembly problem. Brief. Bioinform., 3, 23-31.
-
(2002)
Brief. Bioinform
, vol.3
, pp. 23-31
-
-
Lippert, R.1
-
20
-
-
79956314887
-
Genotype and SNP calling from next-generation sequencing data
-
Nielsen, R. et al. (2011) Genotype and SNP calling from next-generation sequencing data. Nat. Rev. Genet., 12, 443-451.
-
(2011)
Nat. Rev. Genet
, vol.12
, pp. 443-451
-
-
Nielsen, R.1
-
21
-
-
84898978697
-
WhatsHap: Haplotype assembly for future-generation sequencing reads
-
In: Roded, S. (ed) Springer International Publishing
-
Patterson, M. et al. (2014) WhatsHap: haplotype assembly for future-generation sequencing reads. In: Roded, S. (ed) RECOMB, volume 8394 of LNCS, Springer International Publishing, pp. 237-249.
-
(2014)
RECOMB, Volume 8394 of LNCS
, pp. 237-249
-
-
Patterson, M.1
-
22
-
-
84930252314
-
WhatsHap: Weighted haplotype assembly for future-generation sequencing reads
-
Patterson, M. et al. (2015) WhatsHap: weighted haplotype assembly for future-generation sequencing reads. J. Comput. Biol., 6, 498-509.
-
(2015)
J. Comput. Biol
, vol.6
, pp. 498-509
-
-
Patterson, M.1
-
23
-
-
81455142832
-
An efficient algorithm for haplotype inference on pedigrees with recombinations and mutations
-
Pirola, Y. et al. (2012) An efficient algorithm for haplotype inference on pedigrees with recombinations and mutations. IEEE/ACM Trans. Comput. Biol. Bioinform., 9, 12-25.
-
(2012)
IEEE/ACM Trans. Comput. Biol. Bioinform
, vol.9
, pp. 12-25
-
-
Pirola, Y.1
-
24
-
-
84883745092
-
The advantages of SMRT sequencing
-
Roberts, R. J. et al. (2013) The advantages of SMRT sequencing. Genome Biol., 14, 405.
-
(2013)
Genome Biol
, vol.14
, pp. 405
-
-
Roberts, R.J.1
-
25
-
-
84860747223
-
Validation of ITD mutations in FLT3 as a therapeutic target in human acute myeloid leukaemia
-
Smith, C. C. et al. (2012) Validation of ITD mutations in FLT3 as a therapeutic target in human acute myeloid leukaemia. Nature, 485, 260-263.
-
(2012)
Nature
, vol.485
, pp. 260-263
-
-
Smith, C.C.1
-
26
-
-
23144447217
-
Haplotype assembly from aligned weighted SNP fragments
-
Zhao, Y.-Y. et al. (2005) Haplotype assembly from aligned weighted SNP fragments. Comput. Biol. Chem., 29, 281-287.
-
(2005)
Comput. Biol. Chem
, vol.29
, pp. 281-287
-
-
Zhao, Y.-Y.1
|