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Volumn 30, Issue 17, 2014, Pages

Probabilistic single-individual haplotyping

Author keywords

[No Author keywords available]

Indexed keywords

ALGORITHM; DNA SEQUENCE; GENOMICS; HAPLOTYPE; HUMAN; HUMAN GENOME; PROCEDURES; STATISTICAL MODEL;

EID: 84907021664     PISSN: 13674803     EISSN: 14602059     Source Type: Journal    
DOI: 10.1093/bioinformatics/btu484     Document Type: Conference Paper
Times cited : (51)

References (19)
  • 1
    • 49549099085 scopus 로고    scopus 로고
    • HapCUT: An efficient and accurate algorithm for the haplotype assembly problem
    • Bansal, V. and Bafna, V. (2008) HapCUT: an efficient and accurate algorithm for the haplotype assembly problem. Bioinformatics, 24, i153-i159.
    • (2008) Bioinformatics , vol.24
    • Bansal, V.1    Bafna, V.2
  • 2
    • 48949103013 scopus 로고    scopus 로고
    • An MCMC algorithm for haplotype assembly from wholegenome sequence data
    • Bansal, V. et al. (2008) An MCMC algorithm for haplotype assembly from wholegenome sequence data. Genome Res., 18, 1336-1346.
    • (2008) Genome Res , vol.18 , pp. 1336-1346
    • Bansal, V.1
  • 3
    • 80053019891 scopus 로고    scopus 로고
    • Haplotype phasing: Existing methods and new developments
    • Browning, S.R. and Browning, B.L. (2011) Haplotype phasing: existing methods and new developments. Nat. Rev. Genet., 12, 703-714.
    • (2011) Nat. Rev. Genet , vol.12 , pp. 703-714
    • Browning, S.R.1    Browning, B.L.2
  • 4
    • 79955483667 scopus 로고    scopus 로고
    • A framework for variation discovery and genotyping using next-generation DNA sequencing data
    • DePristo, M.A. et al. (2011) A framework for variation discovery and genotyping using next-generation DNA sequencing data. Nat. Genet., 43, 491-498.
    • (2011) Nat. Genet , vol.43 , pp. 491-498
    • Depristo, M.A.1
  • 6
    • 84858386071 scopus 로고    scopus 로고
    • Fosmid-based whole genome haplotyping of a HapMap trio child: Evaluation of Single Individual Haplotyping techniques
    • Duitama, J. et al. (2012) Fosmid-based whole genome haplotyping of a HapMap trio child: evaluation of Single Individual Haplotyping techniques. Nucleic Acids Res., 40, 2041-2053.
    • (2012) Nucleic Acids Res , vol.40 , pp. 2041-2053
    • Duitama, J.1
  • 7
    • 77956537708 scopus 로고    scopus 로고
    • A comparison of several algorithms for the single individual SNP haplotyping reconstruction problem
    • Geraci, F. (2010) A comparison of several algorithms for the single individual SNP haplotyping reconstruction problem. Bioinformatics, 26, 2217-2225.
    • (2010) Bioinformatics , vol.26 , pp. 2217-2225
    • Geraci, F.1
  • 8
    • 0034812677 scopus 로고    scopus 로고
    • Inference of haplotypes from samples of diploid populations: Complexity and algorithms
    • Gusfield, D. (2001) Inference of haplotypes from samples of diploid populations: complexity and algorithms. J. Comput. Biol., 8, 305-323.
    • (2001) J. Comput. Biol , vol.8 , pp. 305-323
    • Gusfield, D.1
  • 9
    • 77954211441 scopus 로고    scopus 로고
    • Optimal algorithms for haplotype assembly from whole-genome sequence data
    • He, D. et al. (2010) Optimal algorithms for haplotype assembly from whole-genome sequence data. Bioinformatics, 26, i183-i190.
    • (2010) Bioinformatics , vol.26
    • He, D.1
  • 11
    • 84875864497 scopus 로고    scopus 로고
    • Whole-genome haplotyping by dilution, amplification, and sequencing
    • Kaper, F. et al. (2013) Whole-genome haplotyping by dilution, amplification, and sequencing. Proc. Natl Acad. Sci. USA, 110, 5552-5557.
    • (2013) Proc. Natl Acad. Sci. USA , vol.110 , pp. 5552-5557
    • Kaper, F.1
  • 12
    • 34347376733 scopus 로고    scopus 로고
    • Diploid genome reconstruction of Ciona intestinalis and comparative analysis with Ciona savignyi
    • Kim, J.H. et al. (2007) Diploid genome reconstruction of Ciona intestinalis and comparative analysis with Ciona savignyi. Genome Res., 17, 1101-1110.
    • (2007) Genome Res , vol.17 , pp. 1101-1110
    • Kim, J.H.1
  • 13
    • 78651333227 scopus 로고    scopus 로고
    • Haplotype-resolved genome sequencing of a Gujarati Indian individual
    • Kitzman, J.O. et al. (2010) Haplotype-resolved genome sequencing of a Gujarati Indian individual. Nat. Biotechnol., 29, 59-63.
    • (2010) Nat. Biotechnol , vol.29 , pp. 59-63
    • Kitzman, J.O.1
  • 15
    • 0036514657 scopus 로고    scopus 로고
    • Algorithmic strategies for the single nucleotide polymorphism haplotype assembly problem
    • Lippert, R. et al. (2002) Algorithmic strategies for the single nucleotide polymorphism haplotype assembly problem. Brief. Bioinformatics, 3, 23-31.
    • (2002) Brief. Bioinformatics , vol.3 , pp. 23-31
    • Lippert, R.1
  • 16
    • 84877343037 scopus 로고    scopus 로고
    • MixSIH: A mixture model for single individual haplotyping
    • Matsumoto, H. and Kiryu, H. (2013) MixSIH: a mixture model for single individual haplotyping. BMC Genomics, 14 (Suppl. 2), S5.
    • (2013) BMC Genomics , vol.14 , Issue.SUPPL. 2
    • Matsumoto, H.1    Kiryu, H.2
  • 17
    • 35048834697 scopus 로고    scopus 로고
    • Fast hare: A fast heuristic for single individual snp haplotype reconstruction
    • Jonassen, I. and Kim, J. (eds) Springer, Berlin Heidelberg
    • Panconesi, A. and Sozio, M. (2004) Fast hare: a fast heuristic for single individual snp haplotype reconstruction. In: Jonassen, I. and Kim, J. (eds) Algorithms in Bioinformatics. Springer, Berlin Heidelberg, pp. 266-277.
    • (2004) Algorithms in Bioinformatics , pp. 266-277
    • Panconesi, A.1    Sozio, M.2
  • 18
    • 84863637922 scopus 로고    scopus 로고
    • Accurate whole-genome sequencing and haplotyping from 10 to 20 human cells
    • Peters, B.A. et al. (2012) Accurate whole-genome sequencing and haplotyping from 10 to 20 human cells. Nature, 487, 190-195.
    • (2012) Nature , vol.487 , pp. 190-195
    • Peters, B.A.1
  • 19
    • 84881496498 scopus 로고    scopus 로고
    • The genome sequence of the colonial chordate, Botryllus schlosseri
    • Voskoboynik, A. et al. (2013) The genome sequence of the colonial chordate, Botryllus schlosseri. eLife, 2, e00569
    • (2013) ELife , vol.2
    • Voskoboynik, A.1


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.