Pulsed blooms and persistent oil-degrading bacterial populations in the water column during and after the Deepwater Horizon blowout

Deep-Sea Research Part II: Topical Studies in Oceanography

Volumn 129, Issue , 2016, Pages 282-291

  Yang, Tingting ^a   Nigro, Lisa M ^a   Gutierrez, Tony ^b,c   D'Ambrosio, Lindsay ^a   Joye, Samantha B ^d   Highsmith, Raymond ^e   Teske, Andreas ^a  

^a University of North Carolina at Chapel Hill   (United States)

^b University of North Carolina   (United States)

^c HERIOT WATT UNIVERSITY   (United Kingdom)

^d UNIVERSITY OF GEORGIA   (United States)

^e UNIVERSITY OF MISSISSIPPI   (United States)

Author keywords

Bacterial community; Cycloclasticus; Hydrocarbon plume; Oceanospirillales; Pyrosequencing; Water column

Indexed keywords

BACTERIA; BIODEGRADATION; BLOWOUTS; CLONING; GENES; HYDROCARBONS; LIBRARIES; RNA; WELLHEADS;

BACTERIAL COMMUNITY; CYCLOCLASTICUS; HYDROCARBON PLUME; OCEANOSPIRILLALES; PYROSEQUENCING; WATER COLUMNS;

OIL SPILLS;

ALGAL BLOOM; BACTERIUM; BIODEGRADATION; BLOWOUT; CLONE; DATA SET; DEEP WATER; GENE; GENETIC ANALYSIS; HYDROCARBON; MICROBIAL COMMUNITY; OIL SPILL; PHYTOPLANKTON; PLUME; WATER COLUMN; WELLHEAD;

ATLANTIC OCEAN; GULF OF MEXICO;

BACTERIA (MICROORGANISMS); COLWELLIA; CYCLOCLASTICUS; OCEANOSPIRILLALES;

EID: 84973355577     PISSN: 09670645     EISSN: None     Source Type: Journal    
DOI: 10.1016/j.dsr2.2014.01.014     Document Type: Article

References (50)

1. Altschul S.F., et al. Basic local alignment search tool. J. Mol. Biol. 1990, 215:403-410.
2. Bælum J., et al. Deep-sea bacteria enriched by oil and dispersant from the Deepwater Horizon Spill. Environ. Microbiol. 2012, 14:2405-2416.
3. Camilli R., et al. Tracking hydrocarbon plume transport and biodegradation at deepwater horizon. Science 2010, 330:201-204.
4. Canfield D.E., et al. A cryptic sulfur cycle in oxygen-minimum-zone waters off the Chilean coast. Science 2010, 330:1375-1378.
5. Caporaso J.G., et al. QIIME allows analysis of high-throughput community sequencing data. Nat. Methods 2010, 7:335-336.
6. Cléroux C., et al. Evidence for calcification depth change of Globorotalia truncatulinoides between deglaciation and Holocene in the Western Atlantic Ocean. Mar. Micropaleontol. 2009, 73:57-61.
7. D'Ambrosio L. Bacterial Community Composition and Extracellular Enzymatic Function in Marine Waters (Masters Science thesis) 2011, Department of Marine Sciences, UNC Chapel Hill.
8. DeLong E.F., Franks D.G., Alldredge A.L. Phylogenetic diversity of aggregate vs. free-living marine bacterial assemblages. Limnol. Oceanogr. 1993, 38:924-934.
9. Diercks, A-R, et al., 2010a. NIUST - Deepwater Horizon Oil Spill Response Cruise. (100528-051). Paper at Oceans 2010 MTS/IEEE Conference. Sept. 20-23, Seattle, WA.
10. Diercks A-R, et al. Characterization of subsurface polycyclic aromatic hydro-carbons at the Deepwater Horizon Wellhead Site. Geophys. Res. Lett. 2010, 37. 10.1029/2010GL045046.
11. Dyksterhouse S.E., et al. Cycloclasticus pugetii gen. nov., sp. nov., an aromatic hydrocarbon-degrading bacterium from marine sediments. Int. J. Syst. Bacteriol. 1995, 45:116-123.
12. Edgar R.C. Search and clustering orders of magnitude faster than BLAST. Bioinformatics 2010, 26:2460-2461.
13. Field K.G., et al. Diversity and depth-specific distribution of SAR11 cluster rRNA gene from marine planktonic bacteria. Appl. Environ. Microbiol. 1997, 63:63-70.
14. Geiselbrecht A.D., et al. Isolation of marine polycyclic aromatic hydrocarbon (PAH)-degrading Cycloclasticus strains from the Gulf of Mexico and comparison of their PAH degradation ability with that of Puget Sound Cycloclasticus strains. Appl. Environ. Microbiol. 1998, 64:4703-4710.
15. Harvey G., et al. Observation of a subsurface oil-rich layer in the open ocean. Science 1979, 205:999-1001.
16. Hazen T.C., et al. Deep-sea oil plume enriches indigenous oil-degrading bacteria. Science 2010, 330:204-208.
17. Joye S.B., et al. Magnitude and oxidation potential of hydrocarbon gases released from the BP oil well blowout. Nat. Geosci. 2011, 4:160-164.
18. Joye S.B., et al. Technical comment on "A persistent oxygen anomaly reveals the fate of spilled methane in the deep Gulf of Mexico". Science 2011, 322:1033-1034.
19. Kaesler I., et al. Spongiispira norvegica gen. nov., sp. nov., a marine bacterium isolated from the boreal sponge Isops phlegraei. Int. J. Syst. Evol. Microbiol. 2008, 58:1815-1820.
20. Kessler J.D., et al. A persistent oxygen anomaly reveals the fate of spilled methane in the deep Gulf of Mexico. Science 2011, 331:312-315.
21. Kujawinski E.B., et al. Fate of dispersants associated with the Deepwater Horizon Oil Spill. Environ. Sci. Technol. 2011, 45:1298-1306.
22. Kunin V., et al. Wrinkles in the rare biosphere: pyrosequencing errors can lead to artificial inflation of diversity estimates. Environ. Microbiol. 2010, 12:118-123.
23. Lu Z.M., et al. Microbial gene functions enriched in the Deepwater Horizon deep-sea oil plume. ISME J. 2012, 6:451-460.
24. Ludwig W., et al. ARB: a software environment for sequence data. Nucleic Acids Res. 2004, 32:1363-1371.
25. Marshall K.T., Morris R.M. Isolation of an aerobic sulfur oxidizer from the SUP05/Arctic96BD-19 clade. ISME J. 2013, 7:452-455.
26. Mason O.U., et al. Metagenome, metatranscriptome and single-cell sequencing reveal microbial response to Deepwater Horizon oil spill. ISME J. 2012, 6:1715-1727.
27. McCarren J., et al. Microbial community transcriptomes reveal microbes and metabolic pathways associated with dissolved organic matter turnover in the sea. Proc. Natl. Acad. Sci. USA 2010, 107:16420-16427.
28. Mullins T.D., et al. Genetic comparisons reveal the same unknown bacterial lineages in Atlantic and Pacific bacterioplankton communities. Limnol. Oceanogr. 1995, 40:148-158.
29. Passow U., et al. Marine snow formation in the aftermath of the deepwater Horizon oil spill in the Gulf of Mexico. Environ. Res. Lett. 2012, 7:035301. 10.1088/1748-9326/7/3/035301.
30. Pinhassi J., et al. Bermanella marisrubri gen. nov. sp. nov., a genome-sequenced gammaproteobacterium from the Red Sea. Int. J. Syst. Evol. Microbiol. 2009, 59:373-377.
31. Pruesse E., et al. SILVA: a comprehensive online resource for quality checked and aligned ribosomal RNA sequence data compatible with ARB. Nucleic Acids Res. 2007, 35:7188-7196.
32. Redmond M.C., Valentine D.L. Natural gas and temperature structured a microbial community response to the Deepwater Horizon oil spill. Proc. Natl. Acad. Sci. USA 2012, 109:20292-20297.
33. Schrope M. Deep wounds. Nature 2011, 472:152-154.
34. Stevens H., Ulloa O. Bacterial diversity in the oxygen minimum zone of the eastern tropical South Pacific. Environ. Microbiol. 2008, 10:1244-1259.
35. Reddy C.M., et al. Composition and fate of gas and oil released to the water column during the Deepwater Horizon oil spill. Proc. Natl. Acad. Sci. USA 2012, 109:20229-20234.
36. Requejo A., Boehm P. Characterization of hydrocarbons in a subsurface oil-rich layer in the Sargasso Sea. Mar. Environ. Res. 1985, 17:45-64.
37. Ryerson T.B., et al. Chemical data quantify Deepwater Horizon hydrocarbon flow rate and environmental distribution. Proc. Natl. Acad. Sci. USA 2012, 109:20246-20259.
38. Schlösser A, et al. Oceaniserpentilla haliotis gen. nov., sp. nov., a marine bacterium isolated from haemolymph serum of blacklip abalone. Int. J. Syst. Evol. Microbiol. 2008, 58:2122-2125.
39. Swan B.K., et al. Potential for chemolithoautotrophy among ubiquitous bacteria lineages in the dark ocean. Science 2011, 333:1296-1300.
40. Swofford, D.L., 2000. PAUP*. Phylogenetic Analysis Using Parsimony (and Other Methods), Version 4. Sinauer Associates, Sunderland, Massachusetts.
41. Teske A., et al. Microbial diversity in hydrothermal sediments in the Guaymas Basin: evidence for Anaerobic Methanotrophic Communities. Appl. Environ. Microbiol. 2002, 68:1994-2007.
42. Teske A., et al. Microbial community composition and function in permanently cold seawater and sediments from an Arctic fjord of Svalbard. Appl. Environ. Microbiol. 2011, 77:2008-2018.
43. Tian F., et al. Bacterial, archaeal and eukaryotic diversity in Arctic sediment as revealed by 16S rRNA and 18S rRNA gene clone libraries analysis. Polar Biol. 2009, 32:93-103.
44. Valentine D.L., et al. Propane respiration jump-starts microbial response to a deep oil spill. Science 2010, 330:208-211.
45. Wade, T.L., et al., 2011. Analyses of water samples from the Deepwater Horizon Oil spill: Documentation of the Subsurface Plume. pp 77-82. Monitoring and Modeling the Deepwater Horizon Oil Spill: A Record-Breaking Enterprise. Geophysical Monograph Series 195. Copyright 2011, American Geophysical Union. doi:10.1029/2011GM001103.
46. Walsh D.A., et al. Metagenome of a versatile chemolithoautotroph from expanding oceanic dead zones. Science 2009, 326:578-582.
47. Yakimov M.M., et al. Oleispira antarctica gen. nov., sp. nov., a novel hydro-carbonoclastic marine bacterium isolated from Antarctic coastal sea water. Int. J. Syst. Evol. Microbiol. 2003, 53:779-785.
48. Yakimov M.M., et al. Thalassolituus oleivorans gen. nov., sp. nov., a novel marine bacterium that obligately utilizes hydrocarbons. Int. J. Syst. Evol. Microbiol. 2004, 54:141-148.
49. Yakimov M.M., Timmis K.N., Golyshin P.N. Obligate oil-degrading marine bacteria. Curr. Opin. Biotech. 2007, 18:257-268.
50. Ziervogel K., et al. Microbial activities and dissolved organic matter dynamics in oil-contaminated surface seawater from the deepwater horizon oil spill site. PLoS One 2012, 7(4):e34816.