-
1
-
-
84922998994
-
An overview of pre-ribosomal RNA processing in eukaryotes. Wiley Interdiscip
-
Henras, A. K., Plisson-Chastang, C., O'Donohue, M. F., Chakraborty, A. & Gleizes, P. E. An overview of pre-ribosomal RNA processing in eukaryotes. Wiley Interdiscip. Rev. RNA 6, 225-242 (2015).
-
(2015)
Rev. RNA
, vol.6
, pp. 225-242
-
-
Henras, A.K.1
Plisson-Chastang, C.2
O'Donohue, M.F.3
Chakraborty, A.4
Gleizes, P.E.5
-
2
-
-
84876816592
-
Quality control mechanisms during ribosome maturation
-
Karbstein, K. Quality control mechanisms during ribosome maturation. Trends Cell Biol. 23, 242-250 (2013).
-
(2013)
Trends Cell Biol.
, vol.23
, pp. 242-250
-
-
Karbstein, K.1
-
3
-
-
77953027564
-
Driving ribosome assembly
-
Kressler, D., Hurt, E. & Bassler, J. Driving ribosome assembly. Biochim. Biophys. Acta 1803, 673-683 (2010).
-
(2010)
Biochim. Biophys. Acta
, vol.1803
, pp. 673-683
-
-
Kressler, D.1
Hurt, E.2
Bassler, J.3
-
4
-
-
84887113964
-
Ribosome biogenesis in the yeast Saccharomyces cerevisiae
-
Woolford, Jr J. L. & Baserga, S. J. Ribosome biogenesis in the yeast Saccharomyces cerevisiae. Genetics 195, 643-681 (2013).
-
(2013)
Genetics
, vol.195
, pp. 643-681
-
-
Woolford, J.L.1
Baserga, S.J.2
-
5
-
-
0015935199
-
The cytoplasmic maturation of a ribosomal precursor ribonucleic acid in yeast
-
Udem, S. A. & Warner, J. R. The cytoplasmic maturation of a ribosomal precursor ribonucleic acid in yeast. J. Biol. Chem. 248, 1412-1416 (1973).
-
(1973)
J. Biol. Chem.
, vol.248
, pp. 1412-1416
-
-
Udem, S.A.1
Warner, J.R.2
-
6
-
-
33745228890
-
Hrr25-dependent phosphorylation state regulates organization of the pre-40S subunit
-
Schafer, T. et al. Hrr25-dependent phosphorylation state regulates organization of the pre-40S subunit. Nature 441, 651-655 (2006).
-
(2006)
Nature
, vol.441
, pp. 651-655
-
-
Schafer, T.1
-
7
-
-
0037536219
-
The path from nucleolar 90S to cytoplasmic 40S pre-ribosomes
-
Schafer, T., Strauss, D., Petfalski, E., Tollervey, D. & Hurt, E. The path from nucleolar 90S to cytoplasmic 40S pre-ribosomes. EMBO J. 22, 1370-1380 (2003).
-
(2003)
EMBO J.
, vol.22
, pp. 1370-1380
-
-
Schafer, T.1
Strauss, D.2
Petfalski, E.3
Tollervey, D.4
Hurt, E.5
-
8
-
-
34249982906
-
Nuclear export and cytoplasmic maturation of ribosomal subunits
-
Zemp, I. & Kutay, U. Nuclear export and cytoplasmic maturation of ribosomal subunits. FEBS Lett. 581, 2783-2793 (2007).
-
(2007)
FEBS Lett.
, vol.581
, pp. 2783-2793
-
-
Zemp, I.1
Kutay, U.2
-
9
-
-
84925324285
-
Snapshots of pre-rRNA structural flexibility reveal eukaryotic 40S assembly dynamics at nucleotide resolution
-
Hector, R. D. et al. Snapshots of pre-rRNA structural flexibility reveal eukaryotic 40S assembly dynamics at nucleotide resolution. Nucleic Acids Res. 42, 12138-12154 (2014).
-
(2014)
Nucleic Acids Res.
, vol.42
, pp. 12138-12154
-
-
Hector, R.D.1
-
10
-
-
84926666585
-
Rio1 mediates ATP-dependent final maturation of 40S ribosomal subunits
-
Turowski, T. W. et al. Rio1 mediates ATP-dependent final maturation of 40S ribosomal subunits. Nucleic Acids Res. 42, 12189-12199 (2014).
-
(2014)
Nucleic Acids Res.
, vol.42
, pp. 12189-12199
-
-
Turowski, T.W.1
-
11
-
-
67649622319
-
Distinct cytoplasmic maturation steps of 40S ribosomal subunit precursors require hRio2
-
Zemp, I. et al. Distinct cytoplasmic maturation steps of 40S ribosomal subunit precursors require hRio2. J. Cell Biol. 185, 1167-1180 (2009).
-
(2009)
J. Cell Biol.
, vol.185
, pp. 1167-1180
-
-
Zemp, I.1
-
12
-
-
84864705013
-
Proofreading of pre-40S ribosome maturation by a translation initiation factor and 60S subunits
-
Lebaron, S. et al. Proofreading of pre-40S ribosome maturation by a translation initiation factor and 60S subunits. Nat. Struct. Mol. Biol. 19, 744-753 (2012).
-
(2012)
Nat. Struct. Mol. Biol.
, vol.19
, pp. 744-753
-
-
Lebaron, S.1
-
13
-
-
84863619022
-
A translation-like cycle is a quality control checkpoint for maturing 40S ribosome subunits
-
Strunk, B. S., Novak, M. N., Young, C. L. & Karbstein, K. A translation-like cycle is a quality control checkpoint for maturing 40S ribosome subunits. Cell 150, 111-121 (2012).
-
(2012)
Cell
, vol.150
, pp. 111-121
-
-
Strunk, B.S.1
Novak, M.N.2
Young, C.L.3
Karbstein, K.4
-
14
-
-
0034844836
-
Bms1p, a novel GTP-binding protein, and the related Tsr1p are required for distinct steps of 40S ribosome biogenesis in yeast
-
Gelperin, D., Horton, L., Beckman, J., Hensold, J. & Lemmon, S. K. Bms1p, a novel GTP-binding protein, and the related Tsr1p are required for distinct steps of 40S ribosome biogenesis in yeast. RNA 7, 1268-1283 (2001).
-
(2001)
RNA
, vol.7
, pp. 1268-1283
-
-
Gelperin, D.1
Horton, L.2
Beckman, J.3
Hensold, J.4
Lemmon, S.K.5
-
15
-
-
81155159831
-
Ribosome assembly factors prevent premature translation initiation by 40S assembly intermediates
-
Strunk, B. S. et al. Ribosome assembly factors prevent premature translation initiation by 40S assembly intermediates. Science 333, 1449-1453 (2011).
-
(2011)
Science
, vol.333
, pp. 1449-1453
-
-
Strunk, B.S.1
-
16
-
-
77954288774
-
Dali server: Conservation mapping in 3D
-
Holm, L. & Rosenstrom, P. Dali server: conservation mapping in 3D. Nucleic Acids Res. 38, W545-W549 (2010).
-
(2010)
Nucleic Acids Res.
, vol.38
, pp. W545-W549
-
-
Holm, L.1
Rosenstrom, P.2
-
17
-
-
79959393264
-
Structure-function relationships of the G domain, a canonical switch motif
-
Wittinghofer, A. & Vetter, I. R. Structure-function relationships of the G domain, a canonical switch motif. Annu. Rev. Biochem. 80, 943-971 (2011).
-
(2011)
Annu. Rev. Biochem.
, vol.80
, pp. 943-971
-
-
Wittinghofer, A.1
Vetter, I.R.2
-
18
-
-
0027179878
-
Crystal structure of active elongation factor Tu reveals major domain rearrangements
-
Berchtold, H. et al. Crystal structure of active elongation factor Tu reveals major domain rearrangements. Nature 365, 126-132 (1993).
-
(1993)
Nature
, vol.365
, pp. 126-132
-
-
Berchtold, H.1
-
19
-
-
13244277554
-
Selenocysteine tRNA-specific elongation factor SelB is a structural chimaera of elongation and initiation factors
-
Leibundgut, M., Frick, C., Thanbichler, M., Bock, A. & Ban, N. Selenocysteine tRNA-specific elongation factor SelB is a structural chimaera of elongation and initiation factors. EMBO J. 24, 11-22 (2005).
-
(2005)
EMBO J.
, vol.24
, pp. 11-22
-
-
Leibundgut, M.1
Frick, C.2
Thanbichler, M.3
Bock, A.4
Ban, N.5
-
20
-
-
84973344515
-
Crystal structure of the full-length bacterial selenocysteine-specific elongation factor SelB
-
Itoh, Y., Sekine, S. & Yokoyama, S. Crystal structure of the full-length bacterial selenocysteine-specific elongation factor SelB. Nucleic Acids Res. 43, 9028-9038 (2015).
-
(2015)
Nucleic Acids Res.
, vol.43
, pp. 9028-9038
-
-
Itoh, Y.1
Sekine, S.2
Yokoyama, S.3
-
21
-
-
0034595505
-
Identification and characterisation of the selenocysteine-specific translation factor SelB from the archaeon Methanococcus jannaschii
-
Rother, M., Wilting, R., Commans, S. & Bock, A. Identification and characterisation of the selenocysteine-specific translation factor SelB from the archaeon Methanococcus jannaschii. J. Mol. Biol. 299, 351-358 (2000).
-
(2000)
J. Mol. Biol.
, vol.299
, pp. 351-358
-
-
Rother, M.1
Wilting, R.2
Commans, S.3
Bock, A.4
-
22
-
-
84900845284
-
EIF5B employs a novel domain release mechanism to catalyze ribosomal subunit joining
-
Kuhle, B. & Ficner, R. eIF5B employs a novel domain release mechanism to catalyze ribosomal subunit joining. EMBO J. 33, 1177-1191 (2014).
-
(2014)
EMBO J.
, vol.33
, pp. 1177-1191
-
-
Kuhle, B.1
Ficner, R.2
-
23
-
-
84916934849
-
X-ray structures of eIF5B and the eIF5B-eIF1A complex: The conformational flexibility of eIF5B is restricted on the ribosome by interaction with eIF1A. Acta Crystallogr
-
Zheng, A. et al. X-ray structures of eIF5B and the eIF5B-eIF1A complex: the conformational flexibility of eIF5B is restricted on the ribosome by interaction with eIF1A. Acta Crystallogr. D Biol. Crystallogr. 70, 3090-3098 (2014).
-
(2014)
D Biol. Crystallogr.
, vol.70
, pp. 3090-3098
-
-
Zheng, A.1
-
24
-
-
84887101681
-
Molecular architecture of a eukaryotic translational initiation complex
-
Fernandez, I. S. et al. Molecular architecture of a eukaryotic translational initiation complex. Science 342, 1240585 (2013).
-
(2013)
Science
, vol.342
, pp. 1240585
-
-
Fernandez, I.S.1
-
25
-
-
84905655144
-
Structure of the mammalian 80S initiation complex with initiation factor 5B on HCV-IRES RNA
-
Yamamoto, H. et al. Structure of the mammalian 80S initiation complex with initiation factor 5B on HCV-IRES RNA. Nat. Struct. Mol. Biol. 21, 721-727 (2014).
-
(2014)
Nat. Struct. Mol. Biol.
, vol.21
, pp. 721-727
-
-
Yamamoto, H.1
-
26
-
-
0035964342
-
Electrostatics of nanosystems: Application to microtubules and the ribosome
-
Baker, N. A., Sept, D., Joseph, S., Holst, M. J. & McCammon, J. A. Electrostatics of nanosystems: application to microtubules and the ribosome. Proc. Natl Acad. Sci. USA 98, 10037-10041 (2001).
-
(2001)
Proc. Natl Acad. Sci. USA
, vol.98
, pp. 10037-10041
-
-
Baker, N.A.1
Sept, D.2
Joseph, S.3
Holst, M.J.4
McCammon, J.A.5
-
27
-
-
23144448512
-
ConSurf 2005: The projection of evolutionary conservation scores of residues on protein structures
-
Landau, M. et al. ConSurf 2005: the projection of evolutionary conservation scores of residues on protein structures. Nucleic Acids Res. 33, W299-W302 (2005).
-
(2005)
Nucleic Acids Res.
, vol.33
, pp. W299-W302
-
-
Landau, M.1
-
28
-
-
4444221565
-
UCSF Chimera - A visualization system for exploratory research and analysis
-
Pettersen, E. F. et al. UCSF Chimera - a visualization system for exploratory research and analysis. J. Comput. Chem. 25, 1605-1612 (2004).
-
(2004)
J. Comput. Chem.
, vol.25
, pp. 1605-1612
-
-
Pettersen, E.F.1
-
29
-
-
77953622163
-
Cracking pre-40S ribosomal subunit structure by systematic analyses of RNA-protein cross-linking
-
Granneman, S., Petfalski, E., Swiatkowska, A. & Tollervey, D. Cracking pre-40S ribosomal subunit structure by systematic analyses of RNA-protein cross-linking. EMBO J. 29, 2026-2036 (2010).
-
(2010)
EMBO J.
, vol.29
, pp. 2026-2036
-
-
Granneman, S.1
Petfalski, E.2
Swiatkowska, A.3
Tollervey, D.4
-
30
-
-
76449106188
-
Integration, scaling, space-group assignment and post-refinement
-
Kabsch, W. Integration, scaling, space-group assignment and post-refinement. Acta Crystallogr. D Biol. Crystallogr. 66, 133-144 (2010).
-
(2010)
Acta Crystallogr. D Biol. Crystallogr.
, vol.66
, pp. 133-144
-
-
Kabsch, W.1
-
32
-
-
84881277158
-
Clustering procedures for the optimal selection of data sets from multiple crystals in macromolecular crystallography
-
Foadi, J. et al. Clustering procedures for the optimal selection of data sets from multiple crystals in macromolecular crystallography. Acta Crystallogr. D Biol. Crystallogr. 69, 1617-1632 (2013).
-
(2013)
Acta Crystallogr. D Biol. Crystallogr.
, vol.69
, pp. 1617-1632
-
-
Foadi, J.1
-
33
-
-
37549039510
-
A short history of SHELX
-
Sheldrick, G. M. A short history of SHELX. Acta Crystallogr. A 64, 112-122 (2008).
-
(2008)
Acta Crystallogr. A
, vol.64
, pp. 112-122
-
-
Sheldrick, G.M.1
-
34
-
-
4644366388
-
HKL2MAP: A graphical user interface for macromolecular phasing with SHELX programs
-
Pape, T. & Schneider, T. R. HKL2MAP: a graphical user interface for macromolecular phasing with SHELX programs. J. Appl. Crystallogr. 37, 843-844 (2004).
-
(2004)
J. Appl. Crystallogr.
, vol.37
, pp. 843-844
-
-
Pape, T.1
Schneider, T.R.2
-
35
-
-
36549027357
-
Automated structure solution with autoSHARP
-
Vonrhein, C., Blanc, E., Roversi, P. & Bricogne, G. Automated structure solution with autoSHARP. Methods Mol. Biol. 364, 215-230 (2007).
-
(2007)
Methods Mol. Biol.
, vol.364
, pp. 215-230
-
-
Vonrhein, C.1
Blanc, E.2
Roversi, P.3
Bricogne, G.4
-
36
-
-
0036900870
-
Rapid automatic NCS identification using heavy-atom substructures
-
Terwilliger, T. C. Rapid automatic NCS identification using heavy-atom substructures. Acta Crystallogr. D Biol. Crystallogr. 58, 2213-2215 (2002).
-
(2002)
Acta Crystallogr. D Biol. Crystallogr.
, vol.58
, pp. 2213-2215
-
-
Terwilliger, T.C.1
-
37
-
-
37349103121
-
Iterative model building, structure refinement and density modification with the PHENIX AutoBuild wizard
-
Terwilliger, T. C. et al. Iterative model building, structure refinement and density modification with the PHENIX AutoBuild wizard. Acta Crystallogr. D Biol. Crystallogr. 64, 61-69 (2008).
-
(2008)
Acta Crystallogr. D Biol. Crystallogr.
, vol.64
, pp. 61-69
-
-
Terwilliger, T.C.1
-
39
-
-
84889120137
-
Improved methods for building protein models in electron-density maps and the location of errors in these models
-
Jones, T. A., Zou, J. Y., Cowan, S. W. & Kjeldgaard, M. Improved methods for building protein models in electron-density maps and the location of errors in these models. Acta Crystallogr. A 47, 110-119 (1991).
-
(1991)
Acta Crystallogr. A
, vol.47
, pp. 110-119
-
-
Jones, T.A.1
Zou, J.Y.2
Cowan, S.W.3
Kjeldgaard, M.4
-
40
-
-
77957946297
-
-
(Global Phasing Ltd., Cambridge, UK)
-
Bricogne, G. et al. BUSTER version 2.10.2 (Global Phasing Ltd., Cambridge, UK, 2016).
-
(2016)
BUSTER Version 2.10.2
-
-
Bricogne, G.1
-
42
-
-
74549178560
-
MolProbity: All-atom structure validation for macromolecular crystallography
-
Chen, V. B. et al. MolProbity: all-atom structure validation for macromolecular crystallography. Acta Crystallogr. D Biol. Crystallogr. 66, 12-21 (2010).
-
(2010)
Acta Crystallogr. D Biol. Crystallogr.
, vol.66
, pp. 12-21
-
-
Chen, V.B.1
-
43
-
-
4444271170
-
A versatile toolbox for PCR-based tagging of yeast genes: New fluorescent proteins, more markers and promoter substitution cassettes
-
Janke, C. et al. A versatile toolbox for PCR-based tagging of yeast genes: new fluorescent proteins, more markers and promoter substitution cassettes. Yeast 21, 947-962 (2004).
-
(2004)
Yeast
, vol.21
, pp. 947-962
-
-
Janke, C.1
|