-
1
-
-
49449094873
-
Genome sequence of the metazoan plant-parasitic nematode Meloidogyne incognita
-
Abad P, Gouzy J, Aury J-M, Castagnone-Sereno P, Danchin EGJ, Deleury E, Perfus-Barbeoch L, Anthouard V, Artiguenave F, Blok VC, et al. 2008. Genome sequence of the metazoan plant-parasitic nematode Meloidogyne incognita. Nat Biotechnol. 26:909-915
-
(2008)
Nat Biotechnol
, vol.26
, pp. 909-915
-
-
Abad, P.1
Gouzy, J.2
Aury, J.-M.3
Castagnone-Sereno, P.4
Danchin, E.G.J.5
Deleury, E.6
Perfus-Barbeoch, L.7
Anthouard, V.8
Artiguenave, F.9
Blok, V.C.10
-
2
-
-
0030801002
-
Gapped BLAST and PSI-BLAST: A new generation of protein database search programs
-
Altschul SF, Madden TL, Schaffer AA, Zhang J, Zhang Z, Miller W, Lipman DJ. 1997. Gapped BLAST and PSI-BLAST: a new generation of protein database search programs. Nucleic Acids Res. 25:3389-3402
-
(1997)
Nucleic Acids Res
, vol.25
, pp. 3389-3402
-
-
Altschul, S.F.1
Madden, T.L.2
Schaffer, A.A.3
Zhang, J.4
Zhang, Z.5
Miller, W.6
Lipman, D.J.7
-
3
-
-
84897549646
-
Analysis of the transcriptome of Hirschmanniella oryzae to explore potential survival strategies and host-nematode interactions
-
Bauters L, Haegeman A, Kyndt T, Gheysen G. 2014. Analysis of the transcriptome of Hirschmanniella oryzae to explore potential survival strategies and host-nematode interactions. Mol Plant Pathol. 15:352-363
-
(2014)
Mol Plant Pathol
, vol.15
, pp. 352-363
-
-
Bauters, L.1
Haegeman, A.2
Kyndt, T.3
Gheysen, G.4
-
4
-
-
84894249416
-
Signatures of adaptation to plant parasitism in nematode genomes
-
Bird DMK, Jones JT, Opperman C, Kikuchi T, Danchin EGJ. 2015. Signatures of adaptation to plant parasitism in nematode genomes. Parasitology 142:S71-S84
-
(2015)
Parasitology
, vol.142
, pp. S71-S84
-
-
Bird, D.M.K.1
Jones, J.T.2
Opperman, C.3
Kikuchi, T.4
Danchin, E.G.J.5
-
5
-
-
0030463062
-
Induction of phloem unloading in Arabidopsis thaliana roots by the plant parasitic nematode Heterodera schachtii
-
Bockenhoff A, Prior DAM, Grundler FMW, Oparka KJ. 1996. Induction of phloem unloading in Arabidopsis thaliana roots by the plant parasitic nematode Heterodera schachtii. Plant Physiol. 112:1421-1427
-
(1996)
Plant Physiol
, vol.112
, pp. 1421-1427
-
-
Bockenhoff, A.1
Prior, D.A.M.2
Grundler, F.M.W.3
Oparka, K.J.4
-
6
-
-
84897947420
-
The genome and life-stage specific transcriptomes of Globodera pallida elucidate key aspects of plant parasitism by a cyst nematode
-
Cotton JA, Lilley CJ, Jones LM, Kikuchi T, Reid AJ, Thorpe P, Tsai IJ, Beasley H, Blok VC, Cock PJA, et al. 2014. The genome and life-stage specific transcriptomes of Globodera pallida elucidate key aspects of plant parasitism by a cyst nematode. Genome Biol. 15:R43
-
(2014)
Genome Biol
, vol.15
, pp. R43
-
-
Cotton, J.A.1
Lilley, C.J.2
Jones, L.M.3
Kikuchi, T.4
Reid, A.J.5
Thorpe, P.6
Tsai, I.J.7
Beasley, H.8
Blok, V.C.9
Cock, P.J.A.10
-
7
-
-
77957103993
-
Evidence for horizontally transferred genes involved in the biosynthesis of Vitamin B-1, B-5, and B-7 in Heterodera glycines
-
Craig JP, Bekal S, Niblack T, Domier L, Lambert KN. 2009. Evidence for horizontally transferred genes involved in the biosynthesis of vitamin B-1, B-5, and B-7 in Heterodera glycines. J Nematol. 41:281-290
-
(2009)
J Nematol
, vol.41
, pp. 281-290
-
-
Craig, J.P.1
Bekal, S.2
Niblack, T.3
Domier, L.4
Lambert, K.N.5
-
8
-
-
47249127801
-
Beta-fructofuranosidase genes of the silkworm Bombyx mori
-
Daimon T, Taguchi T, Meng Y, Katsuma S, Mita K, Shimada T. 2008. Beta-fructofuranosidase genes of the silkworm Bombyx mori. J Biol Chem. 283:15271-15279
-
(2008)
J Biol Chem
, vol.283
, pp. 15271-15279
-
-
Daimon, T.1
Taguchi, T.2
Meng, Y.3
Katsuma, S.4
Mita, K.5
Shimada, T.6
-
9
-
-
78049316906
-
Multiple lateral gene transfers and duplications have promoted plant parasitism ability in nematodes
-
Danchin EG, Rosso MN, Vieira P, de Almeida-Engler J, Coutinho PM, Henrissat B, Abad P. 2010. Multiple lateral gene transfers and duplications have promoted plant parasitism ability in nematodes. Proc Natl Acad. Sci U S A. 107:17651-17656
-
(2010)
Proc Natl Acad. Sci U S A
, vol.107
, pp. 17651-17656
-
-
Danchin, E.G.1
Rosso, M.N.2
Vieira, P.3
De Almeida-Engler, J.4
Coutinho, P.M.5
Henrissat, B.6
Abad, P.7
-
10
-
-
84907572840
-
The Nacobbus aberrans transcriptome reveals insights into the evolution of sedentary endoparasitism in plant-parasitic nematodes
-
Eves-Akker S, Lilley CJ, Danchin EGJ, Rancurel C, Cock PJA, Urwin PE, Jones JT. 2014. The Nacobbus aberrans transcriptome reveals insights into the evolution of sedentary endoparasitism in plant-parasitic nematodes. Genome Biol Evol. 6:2181-2194
-
(2014)
Genome Biol Evol
, vol.6
, pp. 2181-2194
-
-
Eves-Akker, S.1
Lilley, C.J.2
Danchin, E.G.J.3
Rancurel, C.4
Cock, P.J.A.5
Urwin, P.E.6
Jones, J.T.7
-
11
-
-
38549146894
-
The Pfam protein families database
-
Finn RD, Tate J, Mistry J, Coggill PC, Sammut SJ, Hotz H-R, Ceric G, Forslund K, Eddy SR, Sonnhammer ELL, Bateman A. 2008. The Pfam protein families database. Nucleic Acids Res. 36: D281-D288
-
(2008)
Nucleic Acids Res
, vol.36
, pp. D281-D288
-
-
Finn, R.D.1
Tate, J.2
Mistry, J.3
Coggill, P.C.4
Sammut, S.J.5
Hotz, H.-R.6
Ceric, G.7
Forslund, K.8
Eddy, S.R.9
Sonnhammer, E.L.L.10
Bateman, A.11
-
12
-
-
0030478992
-
Changes in the structure of Arabidopsis thaliana during female development of the plant-parasitic nematode Heterodera schachtii
-
Golinowski W, Grundler FMW, Sobczak M. 1996. Changes in the structure of Arabidopsis thaliana during female development of the plant-parasitic nematode Heterodera schachtii. Protoplasma 194:103-116
-
(1996)
Protoplasma
, vol.194
, pp. 103-116
-
-
Golinowski, W.1
Grundler, F.M.W.2
Sobczak, M.3
-
13
-
-
79960546467
-
Horizontal gene transfer in nematodes: A catalyst for plant parasitism?
-
Haegeman A, Jones JT, Danchin EGJ. 2011. Horizontal gene transfer in nematodes: a catalyst for plant parasitism? Mol Plant-Microbe Interact. 24:879-887
-
(2011)
Mol Plant-Microbe Interact
, vol.24
, pp. 879-887
-
-
Haegeman, A.1
Jones, J.T.2
Danchin, E.G.J.3
-
14
-
-
79957469896
-
Analysis of the transcriptome of the root lesion nematode Pratylenchus coffeae generated by 454 sequencing technology
-
Haegeman A, Joseph S, Gheysen G. 2011. Analysis of the transcriptome of the root lesion nematode Pratylenchus coffeae generated by 454 sequencing technology. Mol Biochem Parasitol. 178:7-14
-
(2011)
Mol Biochem Parasitol
, vol.178
, pp. 7-14
-
-
Haegeman, A.1
Joseph, S.2
Gheysen, G.3
-
15
-
-
34547915971
-
How do nematodes get their sweets? Solute supply to sedentary plant-parasitic nematodes
-
Hofmann J, Grundler FMW. 2007. How do nematodes get their sweets? Solute supply to sedentary plant-parasitic nematodes. Nematology 9:451-458
-
(2007)
Nematology
, vol.9
, pp. 451-458
-
-
Hofmann, J.1
Grundler, F.M.W.2
-
16
-
-
34547480956
-
Sucrose supply to nematode-induced syncytia depends on the apoplasmic and symplasmic pathways
-
Hofmann J,Wieczorek K, Blochl A, Grundler FMW. 2007. Sucrose supply to nematode-induced syncytia depends on the apoplasmic and symplasmic pathways. J Exp Bot. 58:1591-1601
-
(2007)
J Exp Bot
, vol.58
, pp. 1591-1601
-
-
Hofmann, J.1
Wieczorek, K.2
Blochl, A.3
Grundler, F.M.W.4
-
17
-
-
27244439713
-
Nematode infection triggers the de novo formation of unloading phloem that allows macromolecular trafficking of green fluorescent protein into syncytia
-
Hoth S, Schneidereit A, Lauterbach C, Scholz-Starke J, Sauer N. 2005. Nematode infection triggers the de novo formation of unloading phloem that allows macromolecular trafficking of green fluorescent protein into syncytia. Plant Physiol. 138:383-392
-
(2005)
Plant Physiol
, vol.138
, pp. 383-392
-
-
Hoth, S.1
Schneidereit, A.2
Lauterbach, C.3
Scholz-Starke, J.4
Sauer, N.5
-
18
-
-
84887117078
-
Top 10 plant parasitic nematodes in molecular plant pathology
-
Jones JT, Haegeman A, Danchin EGJ, Gaur HS, Helder J, Jones MG, Kikuchi T, Manzanilla-López R, Palomares-Rius JE, Wesemael WM, et al. 2013. Top 10 plant parasitic nematodes in molecular plant pathology. Mol Plant Pathol. 14:946-961
-
(2013)
Mol Plant Pathol
, vol.14
, pp. 946-961
-
-
Jones, J.T.1
Haegeman, A.2
Danchin, E.G.J.3
Gaur, H.S.4
Helder, J.5
Jones, M.G.6
Kikuchi, T.7
Manzanilla-López, R.8
Palomares-Rius, J.E.9
Wesemael, W.M.10
-
19
-
-
0034452740
-
SXP/RAL2 proteins of the potato cyst nematode Globodera rostochiensis: Secreted proteins of the hypodermis and amphids
-
Jones JT, Smant G, Blok VC. 2000. SXP/RAL2 proteins of the potato cyst nematode Globodera rostochiensis: secreted proteins of the hypodermis and amphids. Nematology 2:887-893
-
(2000)
Nematology
, vol.2
, pp. 887-893
-
-
Jones, J.T.1
Smant, G.2
Blok, V.C.3
-
20
-
-
84875619226
-
MAFFT multiple sequence alignment software version 7: Improvements in performance and usability
-
Katoh K, Standley DM. 2013. MAFFT multiple sequence alignment software version 7: improvements in performance and usability. Mol Biol Evol. 30:772-780
-
(2013)
Mol Biol Evol
, vol.30
, pp. 772-780
-
-
Katoh, K.1
Standley, D.M.2
-
21
-
-
80053454201
-
Genomic insights into the origin of parasitism in the emerging plant pathogen Bursaphelenchus xylophilus
-
Kikuchi T, Cotton JA, Dalzell JJ, Hasegawa K, Kanzaki N, McVeigh P, Takanashi T, Tsai IJ, Assefa SA, Cock PJA, et al. 2011. Genomic insights into the origin of parasitism in the emerging plant pathogen Bursaphelenchus xylophilus. PLoS Pathog. 7:e1002219
-
(2011)
PLoS Pathog
, vol.7
, pp. e1002219
-
-
Kikuchi, T.1
Cotton, J.A.2
Dalzell, J.J.3
Hasegawa, K.4
Kanzaki, N.5
McVeigh, P.6
Takanashi, T.7
Tsai, I.J.8
Assefa, S.A.9
Cock, P.J.A.10
-
22
-
-
4143081843
-
A family of GHF45 cellulases from the pine wood nematode Bursaphelenchus xylophilus
-
Kikuchi T, Jones JT, Aikawa T, Kosaka H, Ogura N. 2004. A family of GHF45 cellulases from the pine wood nematode Bursaphelenchus xylophilus. FEBS Lett. 572:201-205
-
(2004)
FEBS Lett
, vol.572
, pp. 201-205
-
-
Kikuchi, T.1
Jones, J.T.2
Aikawa, T.3
Kosaka, H.4
Ogura, N.5
-
23
-
-
45849154166
-
An improved general amino acid replacement matrix
-
Le SQ, Gascuel O. 2008. An improved general amino acid replacement matrix. Mol Biol Evol. 25:1307-1320
-
(2008)
Mol Biol Evol
, vol.25
, pp. 1307-1320
-
-
Le, S.Q.1
Gascuel, O.2
-
24
-
-
0035793096
-
HrpZPsph from the plant pathogen Pseudomonas syringae pv Phaseolicola binds to lipid bilayers and forms an ion-conducting pore in vitro
-
Lee J, Klusener B, Tsiamis G, Stevens C, Neyt C, Tampakaki AP, Panopoulos NJ, Nolle J, Weiler EW, Cornelis GR, et al. 2001. HrpZPsph from the plant pathogen Pseudomonas syringae pv. Phaseolicola binds to lipid bilayers and forms an ion-conducting pore in vitro. Proc Natl Acad Sci U S A. 98:289-294
-
(2001)
Proc Natl Acad Sci U S A
, vol.98
, pp. 289-294
-
-
Lee, J.1
Klusener, B.2
Tsiamis, G.3
Stevens, C.4
Neyt, C.5
Tampakaki, A.P.6
Panopoulos, N.J.7
Nolle, J.8
Weiler, E.W.9
Cornelis, G.R.10
-
25
-
-
0015333650
-
A new reaction for colorimetric determination of carbohydrates
-
Lever M. 1972. A new reaction for colorimetric determination of carbohydrates. Anal Biochem. 47:273-279
-
(1972)
Anal Biochem
, vol.47
, pp. 273-279
-
-
Lever, M.1
-
26
-
-
33745634395
-
Cd-hit: A fast program for clustering and comparing large sets of protein or nucleotide sequences
-
Li W, Godzik A. 2006. Cd-hit: a fast program for clustering and comparing large sets of protein or nucleotide sequences. Bioinformatics 22:1658-1659
-
(2006)
Bioinformatics
, vol.22
, pp. 1658-1659
-
-
Li, W.1
Godzik, A.2
-
27
-
-
84903828669
-
The complex hybrid origins of the root knot nematodes revealed through comparative genomics
-
Lunt DH, Kumar S, Koutsovoulos G, Blaxter ML. 2014. The complex hybrid origins of the root knot nematodes revealed through comparative genomics. PeerJ. 2:e356
-
(2014)
PeerJ
, vol.2
, pp. e356
-
-
Lunt, D.H.1
Kumar, S.2
Koutsovoulos, G.3
Blaxter, M.L.4
-
28
-
-
84863665947
-
Current nematode threats to world agriculture
-
Jones JT, Gheysen G, Fenoll C, editors. Heidelberg: Springer
-
Nicol JM, Turner SJ, Coyne DL, den Nijs L, Hockland S, Maafi ZT. 2011. Current nematode threats to world agriculture. In: Jones JT, Gheysen G, Fenoll C, editors. Genomics and molecular genetics of plant-nematode interactions. Heidelberg: Springer. p. 21-44
-
(2011)
Genomics and Molecular Genetics of Plant-nematode Interactions
, pp. 21-44
-
-
Nicol, J.M.1
Turner, S.J.2
Coyne, D.L.3
Den Nijs, L.4
Hockland, S.5
Maafi, Z.T.6
-
29
-
-
84942883630
-
Eighteen new candidate effectors of the phytonematode Heterodera glycines produced specifically in the secretory esophageal gland cells during parasitism
-
Noon JB, Hewezi T, Maier TR, Simmons C, Wei JZ, Wu GS, Llaca V, Deschamps S, Davis EL, Mitchum MG, et al. 2015. Eighteen new candidate effectors of the phytonematode Heterodera glycines produced specifically in the secretory esophageal gland cells during parasitism. Phytopathology 105:1362-1372
-
(2015)
Phytopathology
, vol.105
, pp. 1362-1372
-
-
Noon, J.B.1
Hewezi, T.2
Maier, T.R.3
Simmons, C.4
Wei, J.Z.5
Wu, G.S.6
Llaca, V.7
Deschamps, S.8
Davis, E.L.9
Mitchum, M.G.10
-
30
-
-
0030873221
-
Recombinationmediated PCR-directed plasmid construction in vivo in yeast
-
Oldenburg KR, Vo KT, Michaelis S, Paddon C. 1997. Recombinationmediated PCR-directed plasmid construction in vivo in yeast. Nucleic Acids Res. 25:451-452
-
(1997)
Nucleic Acids Res
, vol.25
, pp. 451-452
-
-
Oldenburg, K.R.1
Vo, K.T.2
Michaelis, S.3
Paddon, C.4
-
31
-
-
54149092490
-
Sequence and genetic map of Meloidogyne hapla: A compact nematode genome for plant parasitism
-
Opperman CH, Bird DM, Williamson VM, Rokhsar DS, Burke M, Cohn J, Cromer J, Diener S, Gajan J, Graham S, et al. 2008. Sequence and genetic map of Meloidogyne hapla: a compact nematode genome for plant parasitism. Proc Natl Acad Sci U S A. 105:14802-14807
-
(2008)
Proc Natl Acad Sci U S A
, vol.105
, pp. 14802-14807
-
-
Opperman, C.H.1
Bird, D.M.2
Williamson, V.M.3
Rokhsar, D.S.4
Burke, M.5
Cohn, J.6
Cromer, J.7
Diener, S.8
Gajan, J.9
Graham, S.10
-
32
-
-
80053345905
-
SignalP 4.0: Discriminating signal peptides from transmembrane regions
-
Petersen TN, Brunak S, von Heijne G, Nielsen H. 2011. SignalP 4.0: discriminating signal peptides from transmembrane regions. Nat Methods. 8:785-786
-
(2011)
Nat Methods
, vol.8
, pp. 785-786
-
-
Petersen, T.N.1
Brunak, S.2
Von Heijne, G.3
Nielsen, H.4
-
33
-
-
84895531638
-
The streamlined genome of Phytomonas spp relative to human pathogenic Kinetoplastids reveals a parasite tailored for plants
-
Porcel BM, Denoeud F, Opperdoes F, Noel B, Madoui M-A, Hammarton TC, Field MC, Da Silva C, Couloux A, Poulain J, et al. 2014. The streamlined genome of Phytomonas spp. relative to human pathogenic Kinetoplastids reveals a parasite tailored for plants. PLoS Genet. 10:e1004007
-
(2014)
PLoS Genet
, vol.10
, pp. e1004007
-
-
Porcel, B.M.1
Denoeud, F.2
Opperdoes, F.3
Noel, B.4
Madoui, M.-A.5
Hammarton, T.C.6
Field, M.C.7
Da Silva, C.8
Couloux, A.9
Poulain, J.10
-
34
-
-
84860109324
-
MrBayes 3.2: Efficient Bayesian phylogenetic inference and model choice across a largemodel space
-
Ronquist F, Teslenko M, van der Mark P, Ayres DL, Darling A, Hohna S, Larget B, Liu L, Suchard MA, Huelsenbeck JP. 2012. MrBayes 3.2: efficient Bayesian phylogenetic inference and model choice across a largemodel space. Syst Biol. 61:539-542
-
(2012)
Syst Biol
, vol.61
, pp. 539-542
-
-
Ronquist, F.1
Teslenko, M.2
Vander Mark, P.3
Ayres, D.L.4
Darling, A.5
Hohna, S.6
Larget, B.7
Liu, L.8
Suchard, M.A.9
Huelsenbeck, J.P.10
-
35
-
-
84865541916
-
Cyst nematodes and syncytia
-
JT Jones, G Gheysen, C Fenoll, editors. Heidelberg: Springer
-
Sobczak M, Golinowski W. 2011. Cyst nematodes and syncytia. In: JT Jones, G Gheysen, C Fenoll, editors. Genomics and molecular genetics of plant-nematode interactions. Heidelberg: Springer. p. 61-82
-
(2011)
Genomics and Molecular Genetics of Plant-nematode Interactions
, pp. 61-82
-
-
Sobczak, M.1
Golinowski, W.2
-
36
-
-
84899553363
-
RAxML version 8: A tool for phylogenetic analysis and post-analysis of large phylogenies
-
Stamatakis A. 2014. RAxML version 8: a tool for phylogenetic analysis and post-analysis of large phylogenies. Bioinformatics 30:1312-1313
-
(2014)
Bioinformatics
, vol.30
, pp. 1312-1313
-
-
Stamatakis, A.1
-
37
-
-
84872601972
-
Multiple ancient horizontal gene transfers and duplications in lepidopteran species
-
Sun BF, Xiao JH, He SM, Liu L, Murphy RW, Huang DW. 2013. Multiple ancient horizontal gene transfers and duplications in lepidopteran species. Insect Mol Biol. 22:72-87
-
(2013)
Insect Mol Biol
, vol.22
, pp. 72-87
-
-
Sun, B.F.1
Xiao, J.H.2
He, S.M.3
Liu, L.4
Murphy, R.W.5
Huang, D.W.6
-
38
-
-
0034783179
-
Effective transgenic resistance to Globodera pallida in potato field trials
-
Urwin PE, Troth KM, Zubko EI, Atkinson HJ. 2001. Effective transgenic resistance to Globodera pallida in potato field trials. Mol Breed. 8:95-101
-
(2001)
Mol Breed
, vol.8
, pp. 95-101
-
-
Urwin, P.E.1
Troth, K.M.2
Zubko, E.I.3
Atkinson, H.J.4
-
39
-
-
65449188232
-
Jalview version 2-A multiple sequence alignment editor and analysis workbench
-
Waterhouse AM, Procter JB, Martin DM, Clamp M, Barton GJ. 2009. Jalview version 2-A multiple sequence alignment editor and analysis workbench. Bioinformatics 25:1189-1191
-
(2009)
Bioinformatics
, vol.25
, pp. 1189-1191
-
-
Waterhouse, A.M.1
Procter, J.B.2
Martin, D.M.3
Clamp, M.4
Barton, G.J.5
|