Recombinant Ralstonia eutropha engineered to utilize xylose and its use for the production of poly(3-hydroxybutyrate) from sunflower stalk hydrolysate solution

Microbial Cell Factories

Volumn 15, Issue 1, 2016, Pages

  Kim, Hee Su ^a   Oh, Young Hoon ^b   Jang, Young Ah ^b   Kang, Kyoung Hee ^b   David, Yokimiko ^c   Yu, Ju Hyun ^b   Song, Bong Keun ^b   Choi, Jong il ^d   Chang, Yong Keun ^a   Joo, Jeong Chan ^b   Park, Si Jae ^c  

^a Korea Advanced Institute of Science and Technology (KAIST)   (South Korea)

^b Korea Research Institute of Chemical Technology   (South Korea)

^c Myong Ji University   (South Korea)

^d Chonnam National University   (South Korea)

Author keywords

Lignocelluloses; Poly(3 hydroxybutyrate); Ralstonia eutropha; Sunflower stalk; Xylose

Indexed keywords

CARBON; GALACTOSE; GLUCOSE; LIGNOCELLULOSE; MANNOSE; NITROGEN; POLY(3 HYDROXYBUTYRIC ACID); XYLOSE; XYLOSE ISOMERASE; ESCHERICHIA COLI PROTEIN; HYDROXYBUTYRIC ACID; ISOMERASE; PHOSPHOTRANSFERASE; POLY-BETA-HYDROXYBUTYRATE; POLYESTER; XYLULOKINASE;

ARTICLE; BIOMASS; CARBON SOURCE; CONTROLLED STUDY; CUPRIAVIDUS NECATOR; ESCHERICHIA COLI; FED BATCH FERMENTATION; GENE; GENE EXPRESSION; HYDROLYSIS; METABOLIC ENGINEERING; NONHUMAN; PLANT STEM; SUNFLOWER; SYNTHESIS; XYLAB GENE; CHEMISTRY; ENZYMOLOGY; GAS CHROMATOGRAPHY; GENETICS; GROWTH, DEVELOPMENT AND AGING; HIGH PERFORMANCE LIQUID CHROMATOGRAPHY; METABOLISM; PLASMID;

ALDOSE-KETOSE ISOMERASES; CHROMATOGRAPHY, GAS; CHROMATOGRAPHY, HIGH PRESSURE LIQUID; CUPRIAVIDUS NECATOR; ESCHERICHIA COLI; ESCHERICHIA COLI PROTEINS; HELIANTHUS; HYDROXYBUTYRATES; METABOLIC ENGINEERING; PHOSPHOTRANSFERASES (ALCOHOL GROUP ACCEPTOR); PLASMIDS; POLYESTERS; XYLOSE;

EID: 84973121335     PISSN: None     EISSN: 14752859     Source Type: Journal    
DOI: 10.1186/s12934-016-0495-6     Document Type: Article

References (53)

1. Mosier N, Wyman C, Dale B, Elander R, Lee YY, Holtzapple M, Ladisch M. Features of promising technologies for pretreatment of lignocellulosic biomass. Bioresour Technol. 2005;96:673-86.
2. Huber GW, Corma A. Synergies between bio- and oil refineries for the production of fuels from biomass. Angew Chem Int Ed. 2007;46:7184-201.
3. Oh YH, Lee SH, Jang YA, Choi JW, Hong KS, Yu JH, Shin J, Song BK, Mastan SG, David Y, et al. Development of rice bran treatment process and its use for the synthesis of polyhydroxyalkanoates from rice bran hydrolysate solution. Bioresour Technol. 2015;181:283-90.
4. Oh YH, Eom IY, Joo JC, Yu JH, Song BK, Lee SH, Hong SH, Park SJ. Recent advances in development of biomass pretreatment technologies used in biorefinery for the production of bio-based fuels, chemicals and polymers. Korean J Chem Eng. 2015;32:1945-59.
5. Mamman AS, Lee JM, Kim YC, Hwang IT, Park NJ, Hwang YK, Chang JS, Hwang JS. Furfural: hemicellulose/xylose derived biochemical. Biofuel Bioprod Bior. 2008;2:438-54.
6. Hahn-Hagerdal B, Karhumaa K, Jeppsson M, Gorwa-Grauslund MF. Metabolic engineering for pentose utilization in Saccharomyces cerevisiae. Biofuels. 2007;108:147-77.
7. Kwak S, Park YC, Seo JH. Biosynthesis of 3-hydroxypropionic acid from glycerol in recombinant Escherichia coli expressing Lactobacillus brevis dhaB and dhaR gene clusters and E. coli K-12 aldH. Bioresour Technol. 2013;135:432-9.
8. Wong CL, Huang CC, Chen WM, Chang JS. Converting crude glycerol to 1,3-propandiol using resting and immobilized Klebsiella sp HE-2 cells. Biochem Eng J. 2011;58-59:177-83.
9. Metsoviti M, Paraskevaidi K, Koutinas A, Zeng AP, Papanikolaou S. Production of 1,3-propanediol, 2,3-butanediol and ethanol by a newly isolated Klebsiella oxytoca strain growing on biodiesel-derived glycerol based media. Process Biochem. 2012;47:1872-82.
10. Mimitsuka T, Sawai H, Hatsu M, Yamada K. Metabolic engineering of Corynebacterium glutamicum for cadaverine fermentation. Biosci Biotech Biochem. 2007;71:2130-5.
11. Ha SJ, Galazka JM, Kim SR, Choi JH, Yang XM, Seo JH, Glass NL, Cate JHD, Jin YS. Engineered Saccharomyces cerevisiae capable of simultaneous cellobiose and xylose fermentation. Proc Natl Acad Sci USA. 2011;108:504-9.
12. Saha BC, Qureshi N, Kennedy GJ, Cotta MA. Enhancement of xylose utilization from corn stover by a recombinant Escherichia coli strain for ethanol production. Bioresour Technol. 2015;190:182-8.
13. Aristidou A, Penttila M. Metabolic engineering applications to renewable resource utilization. Curr Opin Biotech. 2000;11:187-98.
14. Kang MK, Lee J, Um Y, Lee TS, Bott M, Park SJ, Woo HM. Synthetic biology platform of CoryneBrick vectors for gene expression in Corynebacterium glutamicum and its application to xylose utilization. Appl Microbiol Biot. 2014;98:5991-6002.
15. Antonopoulou G, Dimitrellos G, Beobide AS, Vayenas D, Lyberatos G. Chemical pretreatment of sunflower straw biomass: the effect on chemical composition and structural changes. Waste Biomass Valorization. 2015;6:733-46.
16. Caparros S, Ariza J, Lopez F, Nacimiento JA, Garrote G, Jimenez L. Hydrothermal treatment and ethanol pulping of sunflower stalks. Bioresour Technol. 2008;99:1368-72.
17. Telli-Okur M, Eken-Saracoglu N. Fermentation of sunflower seed hull hydrolysate to ethanol by Pichia stipitis. Bioresour Technol. 2008;99:2162-9.
18. Jung CD, Yu JH, Eom IY, Hong KS. Sugar yields from sunflower stalks treated by hydrothermolysis and subsequent enzymatic hydrolysis. Bioresour Technol. 2013;138:1-7.
19. Thomsen MH, Thygesen A, Thomsen AB. Identification and characterization of fermentation inhibitors formed during hydrothermal treatment and following SSF of wheat straw. Appl Microbiol Biot. 2009;83:447-55.
20. Lee SY. Bacterial polyhydroxyalkanoates. Biotechnol Bioeng. 1996;49:1-14.
21. Madison LL, Huisman GW. Metabolic engineering of poly(3-hydroxyalkanoates): from DNA to plastic. Microbiol Mol Biol Rev. 1999;63:21-53.
22. Park SJ, Lee SY, Kim TW, Jung YK, Yang TH. Biosynthesis of lactate-containing polyesters by metabolically engineered bacteria. Biotechnol J. 2012;7:199-212.
23. Park SJ, Lee TW, Lim SC, Kim TW, Lee H, Kim MK, Lee SH, Song BK, Lee SY. Biosynthesis of polyhydroxyalkanoates containing 2-hydroxybutyrate from unrelated carbon source by metabolically engineered Escherichia coli. Appl Microbiol Biotechnol. 2012;93:273-83.
24. Yang TH, Kim TW, Kang HO, Lee SH, Lee EJ, Lim SC, Oh SO, Song AJ, Park SJ, Lee SY. Biosynthesis of polylactic acid and its copolymers using evolved propionate CoA transferase and PHA synthase. Biotechnol Bioeng. 2010;105:150-60.
25. Park SJ, Kim TW, Kim MK, Lee SY, Lim SC. Advanced bacterial polyhydroxyalkanoates: towards a versatile and sustainable platform for unnatural tailor-made polyesters. Biotechnol Adv. 2012;30:1196-206.
26. Pohlmann A, Fricke WF, Reinecke F, Kusian B, Liesegang H, Cramm R, Eitinger T, Ewering C, Potter M, Schwartz E, et al. Genome sequence of the bioplastic-producing "Knallgas" bacterium Ralstonia eutropha H16. Nat Biotechnol. 2006;24:1257-62.
27. Liu K, Liu G, Zhang Y, Ding J, Weng W. Engineering of a d-xylose metabolic pathway in eutropha W50. Wei Sheng Wu Xue Bao. 2014;54:42-52.
28. Wang L, Liu G, Zhang Y, Wang Y, Ding J, Weng W. Limiting metabolic steps in the utilization of d-xylose by recombinant Ralstonia eutropha W50-EAB. Wei Sheng Wu Xue Bao. 2015;55:164-75.
29. Tanaka K, Ishizaki A, Kanamaru T, Kawano T. Production of poly(D-3-hydroxybutyrate) from CO(2), H(2), and O(2) by high cell density autotrophic cultivation of Alcaligenes eutrophus. Biotechnol Bioeng. 1995;45:268-75.
30. Zhang Y, Vadlani PV, Kumar A, Hardwidge PR, Govind R, Tanaka T, Kondo A. Enhanced d-lactic acid production from renewable resources using engineered Lactobacillus plantarum. Appl Microbiol Biotechnol. 2016;100(1):279-88.
31. Chaillou S, Pouwels PH, Postma PW. Transport of d-xylose in Lactobacillus pentosus, Lactobacillus casei, and Lactobacillus plantarum: evidence for a mechanism of facilitated diffusion via the phosphoenolpyruvate:mannose phosphotransferase system. J Bacteriol. 1999;181:4768-73.
32. Kawaguchi H, Vertes AA, Okino S, Inui M, Yukawa H. Engineering of a xylose metabolic pathway in Corynebacterium glutamicum. Appl Environ Microbiol. 2006;72:3418-28.
33. Lee J, Saddler JN, Um Y, Woo HM. Adaptive evolution and metabolic engineering of a cellobiose- and xylose- negative Corynebacterium glutamicum that co-utilizes cellobiose and xylose. Microb Cell Fact. 2016;15:20.
34. Kumar A, Singh LK, Ghosh S. Bioconversion of lignocellulosic fraction of water-hyacinth (Eichhornia crassipes) hemicellulose acid hydrolysate to ethanol by Pichia stipitis. Bioresour Technol. 2009;100:3293-7.
35. Kim SM, Choi BY, Ryu YS, Jung SH, Park JM, Kim GH, Lee SK. Simultaneous utilization of glucose and xylose via novel mechanisms in engineered Escherichia coli. Metab Eng. 2015;30:141-8.
36. Kim SR, Park YC, Jin YS, Seo JH. Strain engineering of Saccharomyces cerevisiae for enhanced xylose metabolism. Biotechnol Adv. 2013;31:851-61.
37. Lee SY. Poly(3-hydroxybutyrate) production from xylose by recombinant Escherichia coli. Bioprocess Eng. 1998;18:397-9.
38. Pan WY, Perrotta JA, Stipanovic AJ, Nomura CT, Nakas JP. Production of polyhydroxyalkanoates by Burkholderia cepacia ATCC 17759 using a detoxified sugar maple hemicellulosic hydrolysate. J Ind Microbiol Biot. 2012;39:459-69.
39. Gawand P, Hyland P, Ekins A, Martin VJ, Mahadevan R. Novel approach to engineer strains for simultaneous sugar utilization. Metab Eng. 2013;20:63-72.
40. Yao R, Hirose Y, Sarkar D, Nakahigashi K, Ye Q, Shimizu K. Catabolic regulation analysis of Escherichia coli and its crp, mlc, mgsA, pgi and ptsG mutants. Microb Cell Fact. 2011;10:67.
41. Eppler T, Postma P, Schutz A, Volker U, Boos W. Glycerol-3-phosphate-induced catabolite repression in Escherichia coli. J Bacteriol. 2002;184:3044-52.
42. Buschke N, Becker J, Schafer R, Kiefer P, Biedendieck R, Wittmann C. Systems metabolic engineering of xylose-utilizing Corynebacterium glutamicum for production of 1,5-diaminopentane. Biotechnol J. 2013;8:557-70.
43. Walfridsson M, Hallborn J, Penttila M, Keranen S, Hahn-Hagerdal B. Xylose-metabolizing Saccharomyces cerevisiae strains overexpressing the TKL1 and TAL1 genes encoding the pentose phosphate pathway enzymes transketolase and transaldolase. Appl Environ Microbiol. 1995;61:4184-90.
44. Choi SY, Park SJ, Kim WJ, Yang JE, Lee H, Shin J, Lee SY. One-step fermentative production of poly(lactate-co-glycolate) from carbohydrates in Escherichia coli. Nat Biotechnol. 2016;34:435-40.
45. Sichwart S, Hetzler S, Broker D, Steinbuchel A. Extension of the substrate utilization range of Ralstonia eutropha strain H16 by metabolic engineering to include mannose and glucose. Appl Environ Microbiol. 2011;77:1325-34.
46. Marangoni C, Furigo AJ, Aragão GMF. The influence of substrate source on the growth of Ralstonia eutropha, aiming at the production of polyhydroxyalkanoate. Braz J Chem Eng. 2001;18(2):175-80.
47. Eom IY, Oh YH, Park SJ, Lee SH, Yu JH. Fermentative l-lactic acid production from pretreated whole slurry of oil palm trunk treated by hydrothermolysis and subsequent enzymatic hydrolysis. Bioresour Technol. 2015;185:143-9.
48. Laopaiboon P, Thani A, Leelavatcharamas V, Laopaiboon L. Acid hydrolysis of sugarcane bagasse for lactic acid production. Bioresour Technol. 2010;101:1036-43.
49. Saratale GD, Oh MK. Characterization of poly-3-hydroxybutyrate (PHB) produced from Ralstonia eutropha using an alkali-pretreated biomass feedstock. Int J Biol Macromol. 2015;80:627-35.
50. Park SJ, Jang YA, Lee H, Park AR, Yang JE, Shin J, Oh YH, Song BK, Jegal J, Lee SH, Lee SY. Metabolic engineering of Ralstonia eutropha for the biosynthesis of 2-hydroxyacid-containing polyhydroxyalkanoates. Metab Eng. 2013;20:20-8.
51. Sambrook J, Russell DW. Molecular cloning: a laboratory manual. Cold spring harbor: Cold spring harbor laboratory press; 2001.
52. York GM, Stubbe J, Sinskey AJ. New insight into the role of the PhaP phasin of Ralstonia eutropha in promoting synthesis of polyhydroxybutyrate. J Bacteriol. 2001;183:2394-7.
53. Braunegg G, Sonnleitner B, Lafferty RM. Rapid gas-chromatographic method for determination of poly-beta-hydroxybutyric acid in microbial biomass. Eur J Appl Microbiol. 1978;6:29-37.