메뉴 건너뛰기




Volumn 6, Issue 6, 2016, Pages 1525-1534

Local ancestry inference in a large US-based Hispanic/Latino study: Hispanic community health study/study of Latinos (HCHS/SOL)

Author keywords

Hispanic Latino; Local ancestry; Principal components analysis

Indexed keywords

ADULT; AFRICAN; AGED; AMERICAN INDIAN; ANALYTIC METHOD; ANCESTRY GROUP; ARTICLE; AUTOSOME; CARIBBEAN; CENTRAL AMERICA; COHORT ANALYSIS; EUROPEAN; FEMALE; GENE FREQUENCY; GENE STRUCTURE; GENETIC ASSOCIATION; GENOTYPE PHENOTYPE CORRELATION; GRANDPARENT; HISPANIC; HUMAN; HUMAN EXPERIMENT; LOCAL ANCESTRY INFERENCE; MALE; MANDINKA (PEOPLE); POPULATION STRUCTURE; PRINCIPAL COMPONENT ANALYSIS; PUERTO RICO; RISK FACTOR; UNITED STATES; WEST AFRICAN; X CHROMOSOME; YORUBA (PEOPLE); ADOLESCENT; ALLELE; EPIDEMIOLOGY; ETHNOLOGY; GENETIC ASSOCIATION STUDY; GENETICS; GENOME-WIDE ASSOCIATION STUDY; GENOTYPE; HEALTH SURVEY; MIDDLE AGED; POPULATION GENETICS; SINGLE NUCLEOTIDE POLYMORPHISM; YOUNG ADULT;

EID: 84973096960     PISSN: None     EISSN: 21601836     Source Type: Journal    
DOI: 10.1534/g3.116.028779     Document Type: Article
Times cited : (42)

References (25)
  • 1
    • 69749099417 scopus 로고    scopus 로고
    • Fast model-based estimation of ancestry in unrelated individuals
    • Alexander, D. H., J. Novembre, and K. Lange, 2009 Fast model-based estimation of ancestry in unrelated individuals. Genome Res. 19(9): 1655-1664.
    • (2009) Genome Res , vol.19 , Issue.9 , pp. 1655-1664
    • Alexander, D.H.1    Novembre, J.2    Lange, K.3
  • 2
    • 84861127863 scopus 로고    scopus 로고
    • Fast and accurate inference of local ancestry in Latino populations
    • Baran, Y., B. Pasaniuc, S. Sankararaman, D. G. Torgerson, C. Gignoux et al., 2012 Fast and accurate inference of local ancestry in Latino populations. Bioinformatics 28(10): 1359-1367.
    • (2012) Bioinformatics , vol.28 , Issue.10 , pp. 1359-1367
    • Baran, Y.1    Pasaniuc, B.2    Sankararaman, S.3    Torgerson, D.G.4    Gignoux, C.5
  • 3
    • 35348817330 scopus 로고    scopus 로고
    • Rapid and accurate haplotype phasing and missing-data inference for whole-genome association studies by use of localized haplotype clustering
    • Browning, S. R., and B. L. Browning, 2007 Rapid and accurate haplotype phasing and missing-data inference for whole-genome association studies by use of localized haplotype clustering. Am. J. Hum. Genet. 81(5): 1084-1097.
    • (2007) Am. J. Hum. Genet , vol.81 , Issue.5 , pp. 1084-1097
    • Browning, S.R.1    Browning, B.L.2
  • 4
    • 84920797739 scopus 로고    scopus 로고
    • The genetic ancestry of African Americans, Latinos, and European Americans across the United States
    • Bryc, K., E. Y. Durand, J. M. Macpherson, D. Reich, and J. L. Mountain, 2015 The genetic ancestry of African Americans, Latinos, and European Americans across the United States. Am. J. Hum. Genet. 96(1): 37-53.
    • (2015) Am. J. Hum. Genet , vol.96 , Issue.1 , pp. 37-53
    • Bryc, K.1    Durand, E.Y.2    Macpherson, J.M.3    Reich, D.4    Mountain, J.L.5
  • 5
    • 84954289580 scopus 로고    scopus 로고
    • Genetic Diversity and Association Studies in U.S. Hispanic/Latino Populations: Applications in the Hispanic Community Health Study/Study of Latinos
    • Conomos, M. P., C. A. Laurie, A. M. Stilp, S. M. Gogarten, C. P. McHugh et al., 2016 Genetic Diversity and Association Studies in U.S. Hispanic/Latino Populations: Applications in the Hispanic Community Health Study/Study of Latinos. Am. J. Hum. Genet. 98: 165-184.
    • (2016) Am. J. Hum. Genet , vol.98 , pp. 165-184
    • Conomos, M.P.1    Laurie, C.A.2    Stilp, A.M.3    Gogarten, S.M.4    McHugh, C.P.5
  • 7
    • 0000071395 scopus 로고
    • Some Distance Properties of Latent Root and Vector Methods Used in Multivariate Analysis
    • Gower, J. C., 1966 Some Distance Properties of Latent Root and Vector Methods Used in Multivariate Analysis. Biometrika 53: 325-338.
    • (1966) Biometrika , vol.53 , pp. 325-338
    • Gower, J.C.1
  • 8
    • 84892684329 scopus 로고    scopus 로고
    • Reconstructing Native American migrations from whole-genome and whole-exome data
    • Gravel, S., F. Zakharia, A. Moreno-Estrada, J. K. Byrnes, M. Muzzio et al., 2013 Reconstructing Native American migrations from whole-genome and whole-exome data. PLoS Genet. 9(12): e1004023.
    • (2013) PLoS Genet , vol.9 , Issue.12
    • Gravel, S.1    Zakharia, F.2    Moreno-Estrada, A.3    Byrnes, J.K.4    Muzzio, M.5
  • 10
    • 84953211197 scopus 로고    scopus 로고
    • Genomic Insights into the Ancestry and Demographic History of South America
    • Homburger, J. R., A. Moreno-Estrada, C. R. Gignoux, D. Nelson, E. Sanchez et al., 2015 Genomic Insights into the Ancestry and Demographic History of South America. PLoS Genet. 11(12): e1005602.
    • (2015) PLoS Genet , vol.11 , Issue.12
    • Homburger, J.R.1    Moreno-Estrada, A.2    Gignoux, C.R.3    Nelson, D.4    Sanchez, E.5
  • 11
  • 12
    • 77954250819 scopus 로고    scopus 로고
    • Sample design and cohort selection in the Hispanic Community Health Study/Study of Latinos
    • Lavange, L. M., W. D. Kalsbeek, P. D. Sorlie, L. M. Aviles-Santa, R. C. Kaplan et al., 2010 Sample design and cohort selection in the Hispanic Community Health Study/Study of Latinos. Ann. Epidemiol. 20(8): 642-649.
    • (2010) Ann. Epidemiol , vol.20 , Issue.8 , pp. 642-649
    • Lavange, L.M.1    Kalsbeek, W.D.2    Sorlie, P.D.3    Aviles-Santa, L.M.4    Kaplan, R.C.5
  • 13
    • 39749181521 scopus 로고    scopus 로고
    • Worldwide human relationships inferred from genome-wide patterns of variation
    • Li, J. Z., D. M. Absher, H. Tang, A. M. Southwick, A. M. Casto et al., 2008 Worldwide human relationships inferred from genome-wide patterns of variation. Science 319(5866): 1100-1104.
    • (2008) Science , vol.319 , Issue.5866 , pp. 1100-1104
    • Li, J.Z.1    Absher, D.M.2    Tang, H.3    Southwick, A.M.4    Casto, A.M.5
  • 14
    • 84881665614 scopus 로고    scopus 로고
    • RFMix: a discriminative modeling approach for rapid and robust local-ancestry inference
    • Maples, B. K., S. Gravel, E. E. Kenny, and C. D. Bustamante, 2013 RFMix: a discriminative modeling approach for rapid and robust local-ancestry inference. Am. J. Hum. Genet. 93(2): 278-288.
    • (2013) Am. J. Hum. Genet , vol.93 , Issue.2 , pp. 278-288
    • Maples, B.K.1    Gravel, S.2    Kenny, E.E.3    Bustamante, C.D.4
  • 16
    • 84902603117 scopus 로고    scopus 로고
    • The genetics of Mexico recapitulates Native American substructure and affects biomedical traits
    • Moreno-Estrada, A., C. R. Gignoux, J. C. Fernandez-Lopez, F. Zakharia, M. Sikora et al., 2014 The genetics of Mexico recapitulates Native American substructure and affects biomedical traits. Science 344(6189): 1280-1285.
    • (2014) Science , vol.344 , Issue.6189 , pp. 1280-1285
    • Moreno-Estrada, A.1    Gignoux, C.R.2    Fernandez-Lopez, J.C.3    Zakharia, F.4    Sikora, M.5
  • 17
    • 84878275481 scopus 로고    scopus 로고
    • Analysis of Latino populations from GALA and MEC studies reveals genomic loci with biased local ancestry estimation
    • Pasaniuc, B., S. Sankararaman, D. G. Torgerson, C. Gignoux, N. Zaitlen et al., 2013 Analysis of Latino populations from GALA and MEC studies reveals genomic loci with biased local ancestry estimation. Bioinformatics 29(11): 1407-1415.
    • (2013) Bioinformatics , vol.29 , Issue.11 , pp. 1407-1415
    • Pasaniuc, B.1    Sankararaman, S.2    Torgerson, D.G.3    Gignoux, C.4    Zaitlen, N.5
  • 19
    • 67651225410 scopus 로고    scopus 로고
    • Sensitive detection of chromosomal segments of distinct ancestry in admixed populations
    • Price, A. L., A. Tandon, N. Patterson, K. C. Barnes, N. Rafaels et al., 2009 Sensitive detection of chromosomal segments of distinct ancestry in admixed populations. PLoS Genet. 5(6): e1000519.
    • (2009) PLoS Genet , vol.5 , Issue.6
    • Price, A.L.1    Tandon, A.2    Patterson, N.3    Barnes, K.C.4    Rafaels, N.5
  • 20
    • 84963641621 scopus 로고    scopus 로고
    • R Foundation for Statistical Computing, Vienna, Austria
    • R Core Team, 2014 R: A Language and Environment for Statistical Computing. R Foundation for Statistical Computing, Vienna, Austria. URL http://www.R-project.org.
    • (2014) R: A Language and Environment for Statistical Computing
  • 21
    • 84865120805 scopus 로고    scopus 로고
    • Reconstructing Native American population history
    • Reich, D., N. Patterson, D. Campbell, A. Tandon, S. Mazieres et al., 2012 Reconstructing Native American population history. Nature 488(7411): 370-374.
    • (2012) Nature , vol.488 , Issue.7411 , pp. 370-374
    • Reich, D.1    Patterson, N.2    Campbell, D.3    Tandon, A.4    Mazieres, S.5
  • 22
    • 28544448462 scopus 로고    scopus 로고
    • Shipwrecks and founder effects: divergent demographic histories reflected in Caribbean mtDNA
    • Salas, A., M. Richards, M. V. Lareu, B. Sobrino, S. Silva et al., 2005 Shipwrecks and founder effects: divergent demographic histories reflected in Caribbean mtDNA. Am. J. Phys. Anthropol. 128(4): 855-860.
    • (2005) Am. J. Phys. Anthropol , vol.128 , Issue.4 , pp. 855-860
    • Salas, A.1    Richards, M.2    Lareu, M.V.3    Sobrino, B.4    Silva, S.5
  • 23
    • 84957838060 scopus 로고    scopus 로고
    • Genome-wide Association Study of Platelet Count Identifies Ancestry-Specific Loci in Hispanic/Latino Americans
    • Schick, U. M., D. Jain, C. J. Hodonsky, J. V. Morrison, J. P. Davis et al., 2016 Genome-wide Association Study of Platelet Count Identifies Ancestry-Specific Loci in Hispanic/Latino Americans. Am. J. Hum. Genet. 98(2): 229-242.
    • (2016) Am. J. Hum. Genet , vol.98 , Issue.2 , pp. 229-242
    • Schick, U.M.1    Jain, D.2    Hodonsky, C.J.3    Morrison, J.V.4    Davis, J.P.5
  • 25
    • 84975795680 scopus 로고    scopus 로고
    • An integrated map of genetic variation from 1,092 human genomes
    • The 1000 Genomes Project Consortium, 2012 An integrated map of genetic variation from 1,092 human genomes. Nature 491(7422): 56-65.
    • (2012) Nature , vol.491 , Issue.7422 , pp. 56-65


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.