Identification and Characterization of a New Pecan [Carya illinoinensis (Wangenh.) K. Koch] Allergen, Car i 2

Journal of Agricultural and Food Chemistry

Volumn 64, Issue 20, 2016, Pages 4146-4151

  Zhang, Yuzhu ^a   Lee, Boram ^a,g   Du, Wen Xian ^a   Lyu, Shu Chen ^b   Nadeau, Kari C ^b   Grauke, Larry J ^c   Zhang, Yan ^d   Wang, Shuo ^d   Fan, Yuting ^a,e   Yi, Jiang ^f   McHugh, Tara H ^a  

^a WESTERN REGIONAL RESEARCH CENTER   (United States)

^b STANFORD UNIVERSITY SCHOOL OF MEDICINE   (United States)

^c SOUTHERN PLAINS AGRICULTURAL RESEARCH CENTER   (United States)

^d TIANJIN UNIVERSITY OF SCIENCE AND TECHNOLOGY   (China)

^e JIANGNAN UNIVERSITY   (China)

^f SHENZHEN UNIVERSITY   (China)

^g UNIVERSITY OF TEXAS SOUTHWESTERN MEDICAL CENTER   (United States)

Author keywords

allergy; Carya illinoinensis (Wangenh.) K. Koch; Western blot; X ray crystallography

Indexed keywords

ALLERGENS; ALLERGIES; BINDING ENERGY; COPPER; CRYSTAL STRUCTURE; CRYSTALLOGRAPHY; DIGITAL STORAGE; FOOD STORAGE; PROTEINS; TREES (MATHEMATICS);

ASYMMETRIC UNIT; BIOLOGICAL UNITS; CARYA ILLINOINENSIS; COPPER-BINDING PROPERTIES; NUTRITIONAL VALUE; REFINED STRUCTURES; SEED STORAGE PROTEINS; WESTERN BLOTS;

X RAY CRYSTALLOGRAPHY;

IMMUNOGLOBULIN E; SEED STORAGE PROTEIN; VICILIN PROTEIN, PLANT;

ADOLESCENT; BLOOD; CARYA; CHEMISTRY; CHILD; CONTROLLED STUDY; FEMALE; FOOD ALLERGY; HUMAN; IMMUNOLOGY; MALE; PLANT SEED; PRESCHOOL CHILD; PROTEIN MOTIF; RANDOMIZED CONTROLLED TRIAL; YOUNG ADULT;

ADOLESCENT; AMINO ACID MOTIFS; CARYA; CHILD; CHILD, PRESCHOOL; FEMALE; FOOD HYPERSENSITIVITY; HUMANS; IMMUNOGLOBULIN E; MALE; SEED STORAGE PROTEINS; SEEDS; YOUNG ADULT;

EID: 84971644115     PISSN: 00218561     EISSN: 15205118     Source Type: Journal    
DOI: 10.1021/acs.jafc.6b00884     Document Type: Article

References (36)

1. Añó, M. A.; Maselli, J. P.; Sanz, M. L.; Fernandez-Benitez, M. Allergy to pine nut Allergol. Immunopathol. 2002, 30, 104-108 10.1016/S0301-0546(02)79099-X
2. Garcia-Menaya, J. M.; Gonzalo-Garijo, M. A.; Moneo, I.; Fernandez, B.; Garcia-Gonzalez, F.; Moreno, F. A 17-kDa allergen detected in pine nuts Allergy 2000, 55, 291-293 10.1034/j.1398-9995.2000.00291.x
3. Sampson, H. A.; Mendelson, L.; Rosen, J. P. Fatal and near-fatal anaphylactic reactions to food in children and adolescents N. Engl. J. Med. 1992, 327, 380-384 10.1056/NEJM199208063270603
4. Yunginger, J. W.; Sweeney, K. G.; Sturner, W. Q.; Giannandrea, L. A.; Teigland, J. D.; Bray, M.; Benson, P. A.; York, J. A.; Biedrzycki, L.; Squillace, D. L. et al. Fatal food-induced anaphylaxis JAMA, J. Am. Med. Assoc. 1988, 260, 1450-1452 10.1001/jama.260.10.1450
5. Asero, R.; Ballmer-Weber, B. K.; Beyer, K.; Conti, A.; Dubakiene, R.; Fernandez-Rivas, M.; Hoffmann-Sommergruber, K.; Lidholm, J.; Mustakov, T.; Oude Elberink, J. N.; Pumphrey, R. S.; Stahl Skov, P.; van Ree, R.; Vlieg-Boerstra, B. J.; Hiller, R.; Hourihane, J. O.; Kowalski, M.; Papadopoulos, N. G.; Wal, J. M.; Mills, E. N.; Vieths, S. IgE-mediated food allergy diagnosis: Current status and new perspectives Mol. Nutr. Food Res. 2007, 51, 135-147 10.1002/mnfr.200600132
6. Beardslee, T. A.; Zeece, M. G.; Sarath, G.; Markwell, J. P. Soybean glycinin G1 acidic chain shares IgE epitopes with peanut allergen Ara h 3 Int. Arch. Allergy Immunol. 2000, 123, 299-307 10.1159/000053642
7. de Leon, M. P.; Drew, A. C.; Glaspole, I. N.; Suphioglu, C.; O'Hehir, R. E.; Rolland, J. M. IgE cross-reactivity between the major peanut allergen Ara h 2 and tree nut allergens Mol. Immunol. 2007, 44, 463-471 10.1016/j.molimm.2006.02.016
8. Sharma, G. M.; Irsigler, A.; Dhanarajan, P.; Ayuso, R.; Bardina, L.; Sampson, H. A.; Roux, K. H.; Sathe, S. K. Cloning and characterization of 2S albumin, Car i 1, a major allergen in pecan J. Agric. Food Chem. 2011, 59, 4130-4139 10.1021/jf104319d
9. Sharma, G. M.; Irsigler, A.; Dhanarajan, P.; Ayuso, R.; Bardina, L.; Sampson, H. A.; Roux, K. H.; Sathe, S. K. Cloning and characterization of an 11S legumin, Car i 4, a major allergen in pecan J. Agric. Food Chem. 2011, 59, 9542-9552 10.1021/jf2017447
10. USDA. Economic Research Service. Fruit and tree nut data: yearbook tables. http://www.ers.usda.gov/data-products/fruit-and-tree-nut-data/yearbook-tables.aspx (Accessed: Sept 20, 2015).
11. Jin, T.; Wang, Y.; Chen, Y. W.; Fu, T. J.; Kothary, M. H.; McHugh, T. H.; Zhang, Y. Crystal structure of the Korean pine (Pinus koraiensis) 7S seed storage protein with copper ligands J. Agric. Food Chem. 2014, 62, 222-228 10.1021/jf4039887
12. Lee, B.; Zhang, R.; Du, W. X.; Grauke, L. J.; McHugh, T. H.; Zhang, Y. Z. Expression, purification and crystallization of pecan (Carya illinoinensis) vicilin Acta Crystallogr., Sect. F: Struct. Biol. Commun. 2014, 70, 1049-1052 10.1107/S2053230X14012369
13. Otwinowski, Z.; Minor, W. Processing of X-ray Diffraction Data Collected in Oscillation Mode Methods Enzymol. 1997, 276, 307-326 10.1016/S0076-6879(97)76066-X
14. McCoy, A. J.; Grosse-Kunstleve, R. W.; Storoni, L. C.; Read, R. J. Likelihood-enhanced fast translation functions Acta Crystallogr., Sect. D: Biol. Crystallogr. 2005, 61, 458-464 10.1107/S0907444905001617
15. Storoni, L. C.; McCoy, A. J.; Read, R. J. Likelihood-enhanced fast rotation functions Acta Crystallogr., Sect. D: Biol. Crystallogr. 2004, 60, 432-438 10.1107/S0907444903028956
16. Adams, P. D.; Afonine, P. V.; Bunkoczi, G.; Chen, V. B.; Davis, I. W.; Echols, N.; Headd, J. J.; Hung, L. W.; Kapral, G. J.; Grosse-Kunstleve, R. W.; McCoy, A. J.; Moriarty, N. W.; Oeffner, R.; Read, R. J.; Richardson, D. C.; Richardson, J. S.; Terwilliger, T. C.; Zwart, P. H. PHENIX: a comprehensive Python-based system for macromolecular structure solution Acta Crystallogr., Sect. D: Biol. Crystallogr. 2010, 66, 213-221 10.1107/S0907444909052925
17. Emsley, P.; Cowtan, K. Coot: model-building tools for molecular graphics Acta Crystallogr., Sect. D: Biol. Crystallogr. 2004, 60, 2126-2132 10.1107/S0907444904019158
18. Lovell, S. C.; Davis, I. W.; Arendall, W. B., 3rd; de Bakker, P. I.; Word, J. M.; Prisant, M. G.; Richardson, J. S.; Richardson, D. C. Structure validation by Calpha geometry: phi,psi and Cbeta deviation Proteins: Struct., Funct., Genet. 2003, 50, 437-450 10.1002/prot.10286
19. Laskowski, R. A.; MacArthur, M. W.; Moss, D. S.; Thornton, J. M. PROCHECK: a program to check the stereochemical quality of protein structures J. Appl. Crystallogr. 1993, 26, 283-291 10.1107/S0021889892009944
20. Potterton, E.; Briggs, P.; Turkenburg, M.; Dodson, E. A graphical user interface to the CCP4 program suite Acta Crystallogr., Sect. D: Biol. Crystallogr. 2003, 59, 1131-1137 10.1107/S0907444903008126
21. Sayle, R. A.; Milner-White, E. J. RASMOL: biomolecular graphics for all Trends Biochem. Sci. 1995, 20, 374-376 10.1016/S0968-0004(00)89080-5
22. Kraulis, P. J. MOLSCRIPT: a program to produce both detailed and schematic plots of protein structures J. Appl. Crystallogr. 1991, 24, 946-950 10.1107/S0021889891004399
23. Merritt, E. A.; Murphy, M. E. Raster3D Version 2.0. A program for photorealistic molecular graphics Acta Crystallogr., Sect. D: Biol. Crystallogr. 1994, 50, 869-873 10.1107/S0907444994006396
24. FDA. What nuts are considered "tree nuts?" http://www.fda.gov/ForIndustry/FDABasicsforIndustry/ucm238807.htm (Accessed: Feb 16, 2015).
25. Cabanos, C.; Urabe, H.; Tandang-Silvas, M. R.; Utsumi, S.; Mikami, B.; Maruyama, N. Crystal structure of the major peanut allergen Ara h 1 Mol. Immunol. 2011, 49, 115-123 10.1016/j.molimm.2011.08.004
26. Chruszcz, M.; Maleki, S. J.; Majorek, K. A.; Demas, M.; Bublin, M.; Solberg, R.; Hurlburt, B. K.; Ruan, S.; Mattisohn, C. P.; Breiteneder, H.; Minor, W. Structural and immunologic characterization of Ara h 1, a major peanut allergen J. Biol. Chem. 2011, 286, 39318-39327 10.1074/jbc.M111.270132
27. Wang, F.; Robotham, J. M.; Teuber, S. S.; Tawde, P.; Sathe, S. K.; Roux, K. H. Ana o 1, a cashew (Anacardium occidental) allergen of the vicilin seed storage protein family J. Allergy Clin. Immunol. 2002, 110, 160-166 10.1067/mai.2002.125208
28. Jin, T.; Albillos, S. M.; Chen, Y. W.; Kothary, M. H.; Fu, T. J.; Zhang, Y. Z. Purification and Characterization of the 7S Vicilin from Korean Pine (Pinus koraiensis) J. Agric. Food Chem. 2008, 56, 8159-8165 10.1021/jf801138q
29. Engh, R. A.; Huber, R. Accurate bond and angle parameters for X-ray protein structure refinement Acta Crystallogr., Sect. A: Found. Crystallogr. 1991, 47, 392-400 10.1107/S0108767391001071
30. Maruyama, Y.; Maruyama, N.; Mikami, B.; Utsumi, S. Structure of the core region of the soybean beta-conglycinin alpha' subunit Acta Crystallogr., Sect. D: Biol. Crystallogr. 2004, 60, 289-297 10.1107/S0907444903027367
31. Maruyama, N.; Adachi, M.; Takahashi, K.; Yagasaki, K.; Kohno, M.; Takenaka, Y.; Okuda, E.; Nakagawa, S.; Mikami, B.; Utsumi, S. Crystal structures of recombinant and native soybean beta-conglycinin beta homotrimers Eur. J. Biochem. 2001, 268, 3595-3604 10.1046/j.1432-1327.2001.02268.x
32. Fukuda, T.; Maruyama, N.; Salleh, M. R.; Mikami, B.; Utsumi, S. Characterization and crystallography of recombinant 7S globulins of Adzuki bean and structure-function relationships with 7S globulins of various crops J. Agric. Food Chem. 2008, 56, 4145-4153 10.1021/jf072667b
33. Itoh, T.; Garcia, R. N.; Adachi, M.; Maruyama, Y.; Tecson-Mendoza, E. M.; Mikami, B.; Utsumi, S. Structure of 8Salpha globulin, the major seed storage protein of mung bean Acta Crystallogr., Sect. D: Biol. Crystallogr. 2006, 62, 824-832 10.1107/S090744490601804X
34. Lawrence, M. C.; Izard, T.; Beuchat, M.; Blagrove, R. J.; Colman, P. M. Structure of phaseolin at 2.2 A resolution. Implications for a common vicilin/legumin structure and the genetic engineering of seed storage proteins J. Mol. Biol. 1994, 238, 748-776 10.1006/jmbi.1994.1333
35. Ko, T. P.; Day, J.; McPherson, A. The refined structure of canavalin from jack bean in two crystal forms at 2.1 and 2.0 A resolution Acta Crystallogr., Sect. D: Biol. Crystallogr. 2000, 56, 411-420 10.1107/S0907444900002237
36. MacPherson, I. S.; Murphy, M. E. Type-2 copper-containing enzymes Cell. Mol. Life Sci. 2007, 64, 2887-2899 10.1007/s00018-007-7310-9