Using Xe as a heavy atom for phase determination of protein trichosanthin structure

Nuclear Science and Techniques

Volumn 25, Issue 3, 2014, Pages

  Chen, Ya Xing ^a   Li, Min Jun ^a   Yu, Feng ^a   Liu, Ke ^a   Xu, Chun Yan ^a   Sun, Bo ^a   Zhou, Huan ^a   Xu, Qin ^a   He, Jian Hua ^a  

^a SHANGHAI INSTITUTE OF APPLIED PHYSICS   (China)

Author keywords

Hydrophobic cavity; Phasing; SAD; Trichosanthin; Xenon

Indexed keywords

EID: 84969722190     PISSN: 10018042     EISSN: 22103147     Source Type: Journal    
DOI: 10.13538/j.1001-8042/nst.25.030502     Document Type: Article

References (30)

1. Schoenborn B P, Watson H C, Kendrew J C. Nature, 1965, 207: 28-30.
2. Schoenborn B P. Nature, 1965, 208: 760-762.
3. Vitali J, Robbins A H, Almo S C, et al. J Appl Crystallogr, 1991, 24: 931-935.
4. Schiltz M, Fourme R, Prange T. Method Enzymol, 2003, 374: 83-119.
5. Colloc'h N, Hajji M E, Bachet B, et al. Nat Struct Mol Biol, 1997, 4: 947-952.
6. Edwards P C, Li J, Burghammer M, et al. J Mol Biol, 2004, 343: 1439-1450.
7. Bourguet W, Ruff M, Chambon P, et al. Nature, 1995, 375: 377-382.
8. Luna V M, Chen Y, Fee J A, et al. Biochemistry-US, 2008, 47: 4657-4665.
9. Winter M B, Herzik M A, Kuriyan J, et al. P Natl Acad Sci USA, 2011, 108: E881-E889.
10. Hayakawa N, Kasahara T, Hasegawa D, et al. J Mol Biol, 2008, 384: 812-823.
11. Birukou I, Maillett D H, Birukova A, et al. Biochemistry-US, 2011, 50: 7361-7374.
12. Guskov A, Kern J, Gabdulkhakov A, et al. Nat Struct Mol Biol, 2009, 16: 334-342.
13. Wang Y. Pure Appl Chem, 1986, 58: 789-798.
14. Chow T P, Feldman R A, Lovett M, et al. J Biol Chem, 1990, 265: 8670-8674.
15. Shaw P C, Lee K M, Wong K-B. Toxicon, 2005, 45: 683-689.
16. Puri M, Kaur I, Perugini M A, et al. Drug Discov Today, 2012, 17: 774-783.
17. Zhou K, Fu Z, Chen M, et al. Proteins, 1994, 19: 4-13.
18. Xiong J P, Xia Z X, Wang Y. Nat Struct Mol Biol, 1994, 1: 695-700.
19. Sun L H, Xu C Y, Yu F, et al. Cryst Growth Des, 2010, 10: 2766-2769.
20. Otwinowski Z O and Minor W. Method Enzymol, 1997, 276: 307-326.
21. Sheldrick G. Acta Crystallogr A, 2008, 64: 112-122.
22. Wu L J, Zhang T, Gu Y X, et al. Acta Crystallogr D, 2009, 65: 1213-1216.
23. Winn M D, Ballard C C, Cowtan K D, et al. Acta Crystallogr D, 2011, 67: 235-242.
24. Cowtan K D, Zhang K Y J, Main P, et al., DM/DMMULTI software for phase improvement by density modification. In: Arnold E and Arnold E editors. International Tables for Crystallography, Crystallography of Biological Macromolecules. Dordrecht, The Netherlands: Kluwer Academic Publishers, 2001, 407-412.
25. Terwilliger T. J Synchrotron Radiat, 2004, 11: 49-52.
26. Langer G, Cohen S X, Lamzin V S, et al. Nat Protoc, 2008, 3: 1171-1179.
27. Murshudov G N, Vagin A A, Dodson E J. Acta Crystallogr D, 1997, 53: 240-255.
28. McCoy A J, Grosse Kunstleve R W, Adams P D, et al. J Appl Crystallogr, 2007, 40: 658-674.
29. Emsley P and Cowtan K. Acta Crystallogr D, 2004, 60: 2126-2132.
30. Adams P D, Afonine P V, Bunkoczi G, et al. Acta Crystallogr D, 2010, 66: 213-221.