-
1
-
-
0035775725
-
A new approachto decodinglife: Systems biology
-
Available from : doi/abs/10.1146/annurev.genom.2.1.34 PMID: 11701654
-
Ideker T, Galitski T, Hood L. A NEW APPROACH TO DECODING LIFE: Systems Biology. Annual Review of Genomics and Human Genetics. 2001; 2(1):343-372. Available from: http://www. annualreviews.org/doi/abs/10.1146/annurev.genom.2.1.343. doi: 10.1146/annurev.genom.2.1.343 PMID: 11701654
-
(2001)
Annual Review of Genomics and Human Genetics
, vol.2
, Issue.1
, pp. 343-372
-
-
Ideker, T.1
Galitski, T.2
Hood, L.3
-
2
-
-
0036500993
-
Systems biology: A brief overview
-
Jan Available from: PMID: 11872829
-
Kitano H. Systems Biology: A Brief Overview. Science. 2002 Jan; 295(5560):1662-1664. Available from: http://www.sciencemag.org/content/295/5560/1662. doi: 10.1126/science.1069492 PMID: 11872829
-
(2002)
Science
, vol.295
, Issue.5560
, pp. 1662-1664
-
-
Kitano, H.1
-
4
-
-
84936747268
-
Medicine bridging systems patient needs
-
Mar Available from: abstract
-
Boissel JP, Auffray C, Noble D, Hood L, Boissel FH. Bridging Systems Medicine and Patient Needs. CPT: Pharmacometrics & Systems Pharmacology. 2015 Mar; 4(3):135-145. Available from: http:// onlinelibrary.wiley.com/doi/10.1002/psp4.26/abstract.
-
(2015)
CPT: Pharmacometrics & Systems Pharmacology
, vol.4
, Issue.3
, pp. 135-145
-
-
Boissel, J.P.1
Auffray, C.2
Noble, D.3
Hood, L.4
Boissel, F.H.5
-
5
-
-
84898808114
-
Enabling multiscale modeling in systems medicine
-
Mar Available from: PMID: 25031615
-
Wolkenhauer O, Auffray C, Brass O, Clairambault J, Deutsch A, Drasdo D, et al. Enabling multiscale modeling in systems medicine. Genome Medicine. 2014 Mar; 6(3):21. Available from: http:// genomemedicine.com/content/6/3/21. doi: 10.1186/gm538 PMID: 25031615
-
(2014)
Genome Medicine
, vol.6
, Issue.3
, pp. 21
-
-
Wolkenhauer, O.1
Auffray, C.2
Brass, O.3
Clairambault, J.4
Deutsch, A.5
Drasdo, D.6
-
6
-
-
85037030721
-
Design and synthesis of synchronization skeletons using branching time temporal logic. Kozen D, editor. Logics of Programs
-
Available from
-
Clarke EM, Emerson EA. Design and synthesis of synchronization skeletons using branching time temporal logic. In: Kozen D, editor. Logics of Programs. No. 131 in Lecture Notes in Computer Science. Springer Berlin Heidelberg; 1982. p. 52-71. Available from: http://link.springer.com/chapter/10.1007/ BFb0025774.
-
(1982)
Springer Berlin Heidelberg
, Issue.131
, pp. 52-71
-
-
Clarke, E.M.1
Emerson, E.A.2
-
7
-
-
0020299274
-
Specification and verification of concurrent systems in CESAR
-
Springer Berlin Heidelberg Available from: 2048/chapte -22. Dezani-Ciancaglini M, Montanari U, editors. International Symposium on Programming
-
Queille JP, Sifakis J. Specification and verification of concurrent systems in CESAR. In: Dezani-Ciancaglini M, Montanari U, editors. International Symposium on Programming. No. 137 in Lecture Notes in Computer Science. Springer Berlin Heidelberg; 1982. p. 337-351. Available from: http://link.springer. com.v-ezproxy.brunel.ac.uk:2048/chapter/10.1007/3-540-11494-7-22.
-
(1982)
137in Lecture Notes in Computer Science
, pp. 337-351
-
-
Queille, J.P.1
Sifakis, J.2
-
8
-
-
84864096922
-
Bridging experiments, models and simulations: An integrative approach to validation in computational cardiac electrophysiology
-
Jul Available from: PMID: 22582088
-
Carusi A, Burrage K, Rodríguez B. Bridging experiments, models and simulations: an integrative approach to validation in computational cardiac electrophysiology. American Journal of Physiology-Heart and Circulatory Physiology. 2012 Jul; 303(2):H144-H155. Available from: http://ajpheart. physiology.org/content/303/2/H144. doi: 10.1152/ajpheart.01151.2011 PMID: 22582088
-
(2012)
American Journal of Physiology-Heart and Circulatory Physiology
, vol.303
, Issue.2
, pp. H144-H155
-
-
Carusi, A.1
Burrage, K.2
Rodríguez, B.3
-
9
-
-
84908463673
-
Validation and variability: Dual challenges on the path from systems biology to systems medicine
-
Dec Part A Available from
-
Carusi A. Validation and variability: Dual challenges on the path from systems biology to systems medicine. Studies in History and Philosophy of Science Part C: Studies in History and Philosophy of Biological and Biomedical Sciences. 2014 Dec; 48, Part A:28-37. Available from: http://www.sciencedirect. com/science/article/pii/S1369848614001265. doi: 10.1016/j.shpsc.2014.08.008
-
(2014)
Studies in History and Philosophy of Science Part C: Studies in History and Philosophy of Biological and Biomedical Sciences
, vol.48
, pp. 28-37
-
-
Carusi, A.1
-
11
-
-
84899544935
-
Survey of multiscale and multiphysics applications and communities
-
Mar
-
Groen D, Zasada SJ, Coveney PV. Survey of Multiscale and Multiphysics Applications and Communities. Computing in Science Engineering. 2014 Mar; 16(2):34-43. doi: 10.1109/MCSE.2013.47
-
(2014)
Computing in Science Engineering
, vol.16
, Issue.2
, pp. 34-43
-
-
Groen, D.1
Zasada, S.J.2
Coveney, P.V.3
-
12
-
-
84969556630
-
-
Anywhere;. Available from cited 201505-20
-
Docker. Docker-Build, Ship, and Run Any App, Anywhere;. Available from: https://www.docker.com/ [cited 2015-05-20].
-
Ship, and Run Any App
-
-
Docker-Build, D.1
-
13
-
-
84868362445
-
Multiscale modeling and data integration in the virtual physiological rat project
-
Nov Available from: PMID: 22805979
-
Beard DA, Neal ML, Tabesh-Saleki N, Thompson CT, Bassingtwaighte JB, Shimoyama M, et al. Multiscale Modeling and Data Integration in the Virtual Physiological Rat Project. Annals of Biomedical Engineering. 2012 Nov; 40(11):2365-2378. Available from: http://www.ncbi.nlm.nih.gov/pmc/articles/ PMC3463790/. doi: 10.1007/s10439-012-0611-7 PMID: 22805979
-
(2012)
Annals of Biomedical Engineering
, vol.40
, Issue.11
, pp. 2365-2378
-
-
Beard, D.A.1
Neal, M.L.2
Tabesh-Saleki, N.3
Thompson, C.T.4
Bassingtwaighte, J.B.5
Shimoyama, M.6
-
14
-
-
84908355212
-
Physiology linking myometrial to intrauterine pressure; how tissue-level contractions create uterine contractions of labor
-
Oct PMID: 25330227
-
Young RC, Barendse P. Linking Myometrial Physiology to Intrauterine Pressure; How Tissue-Level Contractions Create Uterine Contractions of Labor. PLoS Comput Biol. 2014 Oct; 10(10):e1003850. doi: 10.1371/journal.pcbi.1003850 PMID: 25330227
-
(2014)
PLoS Comput Biol
, vol.10
, Issue.10
, pp. e1003850
-
-
Young, R.C.1
Barendse, P.2
-
15
-
-
79952637804
-
Modeling the cell cycle: Why do certain circuits oscillate?
-
Mar Available from: PMID: 21414480
-
Ferrell JE Jr, Tsai TYC, Yang Q. Modeling the Cell Cycle: Why Do Certain Circuits Oscillate? Cell. 2011 Mar; 144(6):874-885. Available from: http://www.sciencedirect.com/science/article/pii/ S0092867411002431. doi: 10.1016/j.cell.2011.03.006 PMID: 21414480
-
(2011)
Cell
, vol.144
, Issue.6
, pp. 874-885
-
-
Ferrell, J.E.1
Tsai, T.Y.C.2
Yang, Q.3
-
16
-
-
46449119246
-
Introduction of an agent-based multi-scale modular architecture for dynamic knowledge representation of acute inflammation
-
May Available from: PMID: 18505587
-
An G. Introduction of an agent-based multi-scale modular architecture for dynamic knowledge representation of acute inflammation. Theoretical Biology and Medical Modelling. 2008 May; 5(1):11. Available from: http://www.tbiomed.com/content/5/1/11/abstract. doi: 10.1186/1742-4682-5-11 PMID: 18505587
-
(2008)
Theoretical Biology and Medical Modelling
, vol.5
, Issue.1
, pp. 11
-
-
An, G.1
-
17
-
-
84910676889
-
Analysis formal of the wnt/β-catenin through statistical model checking
-
Margaria T, Steffen B, editors. Leveraging Applications of Formal Methods, Verification and Validation 8803in Lecture Notes in Computer Science. Springer Berlin Heidelberg; p. Available from
-
Ballarini P, Gallet E, Gall PL, Manceny M. Formal Analysis of the Wnt/β-catenin through Statistical Model Checking. In: Margaria T, Steffen B, editors. Leveraging Applications of Formal Methods, Verification and Validation. Specialized Techniques and Applications. No. 8803 in Lecture Notes in Computer Science. Springer Berlin Heidelberg; 2014. p. 193-207. Available from: http://link.springer.com/ chapter/10.1007/978-3-662-45231-8-14.
-
(2014)
Specialized Techniques and Applications
, pp. 193-207
-
-
Ballarini, P.1
Gallet, E.2
Gall, P.L.3
Manceny, M.4
-
18
-
-
84855944534
-
Probabilistic model checking of biological systems with uncertain kinetic rates
-
Feb Available from
-
Barbuti R, Levi F, Milazzo P, Scatena G. Probabilistic model checking of biological systems with uncertain kinetic rates. Theoretical Computer Science. 2012 Feb; 419:2-16. Available from: http://www. sciencedirect.com/science/article/pii/S0304397511008929. doi: 10.1016/j.tcs.2011.10.022
-
(2012)
Theoretical Computer Science
, vol.419
, pp. 2-16
-
-
Barbuti, R.1
Levi, F.2
Milazzo, P.3
Scatena, G.4
-
19
-
-
84995314780
-
A framework for parallel analysis of biological models
-
Oct ArXiv: 0910.0928Available from
-
Barnat J, Brim L, Černá I, Dražan S, Fabriková J, Láník J, et al.: A Framework for Parallel Analysis of Biological Models. Electronic Proceedings in Theoretical Computer Science. 2009 Oct; 6:31-45. ArXiv: 0910.0928. Available from: http://arxiv.org/abs/0910.0928. doi: 10.4204/EPTCS.6.3
-
(2009)
Electronic Proceedings in Theoretical Computer Science
, vol.6
, pp. 31-45
-
-
Barnat, J.1
Brim, L.2
ČernáI3
Dražan, S.4
Fabriková, J.5
Láník, J.6
-
20
-
-
84860513120
-
Validation of qualitative models of genetic regulatory networks by model checking: Analysis of the nutritional stress response in Escherichia coli
-
Jun Available from: PMID: 15961457
-
Batt G, Ropers D, Jong Hd, Geiselmann J, Mateescu R, Page M, et al. Validation of qualitative models of genetic regulatory networks by model checking: analysis of the nutritional stress response in Escherichia coli. Bioinformatics. 2005 Jun; 21(suppl 1):i19-i28. Available from: http://bioinformatics. oxfordjournals.org/content/21/suppl-1/i19. doi: 10.1093/bioinformatics/bti1048 PMID: 15961457
-
(2005)
Bioinformatics
, vol.21
, pp. 19-28
-
-
Batt, G.1
Ropers, D.2
Hd, J.3
Geiselmann, J.4
Mateescu, R.5
Page, M.6
-
21
-
-
3042693879
-
Application of formal methods to biological regulatory networks:Extending Thomas' asynchronous logical approach with temporal logic
-
Aug Available from: PMID: 15234201
-
Bernot G, Comet JP, Richard A, Guespin J. Application of formal methods to biological regulatory networks: extending Thomas' asynchronous logical approach with temporal logic. Journal of Theoretical Biology. 2004 Aug; 229(3):339-347. Available from: http://www.sciencedirect.com/science/article/pii/ S0022519304001444. doi: 10.1016/j.jtbi.2004.04.003 PMID: 15234201
-
(2004)
Journal of Theoretical Biology
, vol.229
, Issue.3
, pp. 339-347
-
-
Bernot, G.1
Comet, J.P.2
Richard, A.3
Guespin, J.4
-
22
-
-
38549170348
-
Transactions on computational systems biology VI
-
Analysis of Signalling Pathways Using Continuous Time Markov Chains. Priami C, Plotkin G, editors Springer Berlin Heidelberg Available from
-
Calder M, Vyshemirsky V, Gilbert D, Orton R. Analysis of Signalling Pathways Using Continuous Time Markov Chains. In: Priami C, Plotkin G, editors. Transactions on Computational Systems Biology VI. No. 4220 in Lecture Notes in Computer Science. Springer Berlin Heidelberg; 2006. p. 44-67. Available from: http://link.springer.com/chapter/10.1007/11880646-3.
-
(2006)
4220in Lecture Notes in Computer Science
, pp. 44-67
-
-
Calder, M.1
Vyshemirsky, V.2
Gilbert, D.3
Orton, R.4
-
23
-
-
84958602011
-
CheckingSymbolic model of biochemical networks
-
2602in Lecture Notes in Computer Science. Rovereto, Italy: Springer Berlin Heidelberg; Available from
-
Chabrier N, Fages F. Symbolic Model Checking of Biochemical Networks. In: Priami C, editor. Computational Methods in Systems Biology. No. 2602 in Lecture Notes in Computer Science. Rovereto, Italy: Springer Berlin Heidelberg; 2003. p. 149-162. Available from: http://link.springer.com/chapter/10.1007/ 3-540-36481-1-13.
-
(2003)
Priami C, Editor. Computational Methods in Systems Biology
, pp. 149-162
-
-
Chabrier, N.1
Fages, F.2
-
24
-
-
4444226201
-
Modeling and querying biomolecular interaction networks
-
Sep Available from
-
Chabrier-Rivier N, Chiaverini M, Danos V, Fages F, Schächter V. Modeling and querying biomolecular interaction networks. Theoretical Computer Science. 2004 Sep; 325(1):25-44. Available from: http:// www.sciencedirect.com/science/article/pii/S030439750400218X. doi: 10.1016/j.tcs.2004.03.063
-
(2004)
Theoretical Computer Science
, vol.325
, Issue.1
, pp. 25-44
-
-
Chabrier-Rivier, N.1
Chiaverini, M.2
Danos, V.3
Fages, F.4
Schächter, V.5
-
25
-
-
57049089108
-
CheckingStatistical model in bio-lab: Applications to the automated analysis of t-cell receptor signaling pathway
-
5307in Lecture Notes in Computer Science. Springer Berlin Heidelberg Available from
-
Clarke EM, Faeder JR, Langmead CJ, Harris LA, Jha SK, Legay A. Statistical Model Checking in Bio-Lab: Applications to the Automated Analysis of T-Cell Receptor Signaling Pathway. In: Heiner M, Uhrmacher AM, editors. Computational Methods in Systems Biology. No. 5307 in Lecture Notes in Computer Science. Springer Berlin Heidelberg; 2008. p. 231-250. Available from: http://link.springer. com/chapter/10.1007/978-3-540-88562-7-18.
-
(2008)
Heiner M, Uhrmacher AM, Editors. Computational Methods in Systems Biology
, pp. 231-250
-
-
Clarke, E.M.1
Faeder, J.R.2
Langmead, C.J.3
Harris, L.A.4
Jha, S.K.5
Legay, A.6
-
26
-
-
84868282414
-
Runtime verification of biological systems
-
Margaria T, Steffen B, Editors. 7609 in Lecture Notes in Computer Science. Springer Berlin Heidelberg Available from: 1007/978-3-642-34026-0-29
-
David A, Larsen KG, Legay A, Mikučionis M, Poulsen DB, Sedwards S. Runtime Verification of Biological Systems. In: Margaria T, Steffen B, editors. Leveraging Applications of Formal Methods, Verification and Validation. Technologies for Mastering Change. No. 7609 in Lecture Notes in Computer Science. Springer Berlin Heidelberg; 2012. p. 388-404. Available from: http://link.springer.com/chapter/10. 1007/978-3-642-34026-0-29.
-
(2012)
Leveraging Applications of Formal Methods, Verification and Validation. Technologies for Mastering Change
, pp. 388-404
-
-
David, A.1
Larsen, K.G.2
Legay, A.3
Mikučionis, M.4
Poulsen, D.B.5
Sedwards, S.6
-
27
-
-
84961642725
-
Computational analysis of the roles of ER-Golgi network in the cell cycle
-
Dec S3Available from S4-S3
-
Gong H, Feng L. Computational analysis of the roles of ER-Golgi network in the cell cycle. BMC Systems Biology. 2014 Dec; 8(Suppl 4):S3. Available from: http://www.biomedcentral.com/1752-0509/8/ S4/S3/comments. doi: 10.1186/1752-0509-8-S4-S3
-
(2014)
BMC Systems Biology
, vol.8
-
-
Gong, H.1
Feng, L.2
-
28
-
-
38649122071
-
Probabilistic model checking of complex biological pathways
-
Feb Available from
-
Heath J, Kwiatkowska M, Norman G, Parker D, Tymchyshyn O. Probabilistic model checking of complex biological pathways. Theoretical Computer Science. 2008 Feb; 391(3):239-257. Available from: http://www.sciencedirect.com/science/article/pii/S0304397507008572. doi: 10.1016/j.tcs.2007.11.013
-
(2008)
Theoretical Computer Science
, vol.391
, Issue.3
, pp. 239-257
-
-
Heath, J.1
Kwiatkowska, M.2
Norman, G.3
Parker, D.4
Tymchyshyn, O.5
-
29
-
-
45749112203
-
NetsPetri for systems and synthetic biology
-
Springer Berlin Heidelberg Bernardo M, Degano P, Zavattaro G, editors. Formal Methods for Computational Systems Biology Available from
-
Heiner M, Gilbert D, Donaldson R. Petri Nets for Systems and Synthetic Biology. In: Bernardo M, Degano P, Zavattaro G, editors. Formal Methods for Computational Systems Biology. No. 5016 in Lecture Notes in Computer Science. Springer Berlin Heidelberg; 2008. p. 215-264. Available from: http:// link.springer.com/chapter/10.1007/978-3-540-68894-5-7.
-
(2008)
Lecture Notes in Computer Science
, vol.5016
, pp. 215-264
-
-
Heiner, M.1
Gilbert, D.2
Donaldson, R.3
-
30
-
-
34548060449
-
-
Bernardo M, Hillston J, editors. Formal Methods for Performance Evaluation. 4486in Lecture Notes in Computer Science. Springer Berlin Heidelberg Available from: 1007/978-3-540-72522-0-6.
-
Kwiatkowska M, Norman G, Parker D. Stochastic Model Checking. In: Bernardo M, Hillston J, editors. Formal Methods for Performance Evaluation. No. 4486 in Lecture Notes in Computer Science. Springer Berlin Heidelberg; 2007. p. 220-270. Available from: http://link.springer.com/chapter/10. 1007/978-3-540-72522-0-6.
-
(2007)
StochasticModel Checking
, pp. 220-270
-
-
Kwiatkowska, M.1
Norman, G.2
Parker, D.3
-
31
-
-
84951853106
-
-
Ecole Normale Supérieure de Cachan, Cachan, France: International Federation of Automatic Control Available from
-
Monteiro PT, Wassim AJ, Thieffry D, Chaouiya C. Model Checking Logical Regulatory Networks. In: Discrete Event Systems. vol. 12. Ecole Normale Supérieure de Cachan, Cachan, France: International Federation of Automatic Control; 2014. p. 170-175. Available from: http://www.ifac-papersonline. net/Detailed/65093.html.
-
(2014)
Model CheckingRegulatoryNetworks.Discrete Event Systems12
, pp. 170-175
-
-
Monteiro, P.T.1
Wassim, A.J.2
Thieffry, D.3
Chaouiya, C.4
Logical5
-
32
-
-
84875252085
-
Šafránek D Timed Modelling of Gene Networks with Arbitrarily Precise Expression Discretization
-
Mar Available from
-
Van Goethem S, Jacquet JM, Brim L, Šafránek D. Timed Modelling of Gene Networks with Arbitrarily Precise Expression Discretization. Electronic Notes in Theoretical Computer Science. 2013 Mar; 293:67-81. Available from: http://www.sciencedirect.com/science/article/pii/S1571066113000212. doi: 10.1016/j.entcs.2013.02.019
-
(2013)
Electronic Notes in Theoretical Computer Science
, vol.293
, pp. 67-81
-
-
Van S, G.1
Jacquet, J.M.2
Brim, L.3
-
33
-
-
79951798740
-
Parameter scanning by parallel model checking with applications in systems biology
-
Second International Workshop on Parallel and Distributed Methods in Verification, 2010Ninth International Workshop On, and
-
Barnat J, Brim L, Šafránek D, Vejnár M. Parameter Scanning by Parallel Model Checking with Applications in Systems Biology. In: Second International Workshop on Parallel and Distributed Methods in Verification, 2010 Ninth International Workshop on, and High Performance Computational Systems Biology; 2010. p. 95-104.
-
High Performance Computational Systems Biology
, vol.2010
, pp. 95-104
-
-
Barnat, J.1
Brim, L.2
Šafránek, D.3
Vejnár, M.4
-
34
-
-
34548804054
-
-
Bemporad A, Bicchi A, Buttazzo G, Editors Hybrid Systems: Computation and Control. 4416in Lecture Notes in Computer Science. Springer Berlin Heidelberg Available from
-
Batt G, Belta C, Weiss R. Model Checking Genetic Regulatory Networks with Parameter Uncertainty. In: Bemporad A, Bicchi A, Buttazzo G, editors. Hybrid Systems: Computation and Control. No. 4416 in Lecture Notes in Computer Science. Springer Berlin Heidelberg; 2007. p. 61-75. Available from: http://link.springer.com/chapter/10.1007/978-3-540-71493-4-8.
-
(2007)
GeneticModel Checking Networks Regulatory with Parameter Uncertainty
, pp. 61-75
-
-
Batt, G.1
Belta, C.2
Weiss, R.3
-
35
-
-
39849098741
-
Analysis temporal logicof gene networks under parameter uncertainty
-
53(Special Issue) 911330
-
Batt G, Belta C, Weiss R. Temporal Logic Analysis of Gene Networks Under Parameter Uncertainty. IEEE Transactions on Automatic Control. 2008 Jan; 53(Special Issue):215-229. doi: 10.1109/TAC. 2007.911330
-
(2007)
IEEETransactions on Automatic Control2008Jan
, pp. 215-229
-
-
Batt, G.1
Belta, C.2
Weiss, R.3
-
36
-
-
84881119567
-
Exploring parameter space of stochastic biochemical systems using quantitative model checking
-
Sharygina N, Veith H, editors Springer Berlin Heidelberg Available from
-
Brim L, Češka M, Dražan S, Šafránek D. Exploring Parameter Space of Stochastic Biochemical Systems Using Quantitative Model Checking. In: Sharygina N, Veith H, editors. Computer Aided Verification. No. 8044 in Lecture Notes in Computer Science. Springer Berlin Heidelberg; 2013. p. 107-123. Available from: http://link.springer.com/chapter/10.1007/978-3-642-39799-8-7.
-
(2013)
Computer Aided Verification. 8044in Lecture Notes in Computer Science
, pp. 107-123
-
-
Brim, L.1
Češka, M.2
Dražan, S.3
Šafránek, D.4
-
37
-
-
84910123833
-
-
Mendes P, Dada JO, Smallbone K, editors. Computational Methods in Systems Biology. 8859in Lecture Notes in Computer Science. Springer International Publishing Available from
-
Češka M, Dannenberg F, Kwiatkowska M, Paoletti N. Precise Parameter Synthesis for Stochastic Biochemical Systems. In: Mendes P, Dada JO, Smallbone K, editors. Computational Methods in Systems Biology. No. 8859 in Lecture Notes in Computer Science. Springer International Publishing; 2014. p. 86-98. Available from: http://link.springer.com/chapter/10.1007/978-3-319-12982-2-7.
-
(2014)
Precise Parameter Synthesis for Stochastic Biochemical Systems.
, pp. 86-98
-
-
Češka, M.1
Dannenberg, F.2
Kwiatkowska, M.3
Paoletti, N.4
-
38
-
-
57049106843
-
CheckingA model approach to the parameter estimation of biochemical pathways
-
Heiner M, Uhrmacher AM, Editors. Springer Berlin Heidelberg; Available from
-
Donaldson R, Gilbert D. A Model Checking Approach to the Parameter Estimation of Biochemical Pathways. In: Heiner M, Uhrmacher AM, editors. Computational Methods in Systems Biology. No. 5307 in Lecture Notes in Computer Science. Springer Berlin Heidelberg; 2008. p. 269-287. Available from: http://link.springer.com/chapter/10.1007/978-3-540-88562-7-20.
-
(2008)
Computational Methods in Systems Biology. 5307in Lecture Notes in Computer Science
, pp. 269-287
-
-
Donaldson, R.1
Gilbert, D.2
-
39
-
-
84969539348
-
-
Giacobbe M, Guet CC, Gupta A, Henzinger TA, Paixao T, Petrov T. Model Checking Gene Regulatory Networks. arXiv:14107704 [cs, q-bio]. 2015 Oct;ArXiv: 1410.7704. Available from
-
Giacobbe M, Guet CC, Gupta A, Henzinger TA, Paixao T, Petrov T. Model Checking Gene Regulatory Networks. arXiv:14107704 [cs, q-bio]. 2015 Oct;ArXiv: 1410.7704. Available from: http://arxiv.org/abs/ 1410.7704.
-
(2015)
Model CheckingRegulatoryNetworks
, pp. 1410-7704
-
-
Giacobbe, M.1
Guet, C.C.2
Gupta, A.3
Henzinger, T.A.4
Paixao, T.5
Petrov, T.6
Gene7
-
40
-
-
79953186869
-
Synthesis and infeasibility analysis for stochastic models of biochemical systems using statistical model checking and abstraction refinement
-
May Available from
-
Jha SK, Langmead CJ. Synthesis and infeasibility analysis for stochastic models of biochemical systems using statistical model checking and abstraction refinement. Theoretical Computer Science. 2011 May; 412(21):2162-2187. Available from: http://www.sciencedirect.com/science/article/pii/ S0304397511000387. doi: 10.1016/j.tcs.2011.01.012
-
(2011)
Theoretical Computer Science
, vol.412
, Issue.21
, pp. 2162-2187
-
-
Jha, S.K.1
Langmead, C.J.2
-
41
-
-
84910147317
-
Parameter synthesis for cardiac cell hybrid models using δ-decisions
-
Springer International Publishing 8859 Mendes P, Dada JO, Smallbone K, Editors Lecture Notes in Computer Science
-
Liu B, Kong S, Gao S, Zuliani P, Clarke EM. Parameter Synthesis for Cardiac Cell Hybrid Models Using δ-Decisions. In: Mendes P, Dada JO, Smallbone K, editors. Computational Methods in Systems Biology. No. 8859 in Lecture Notes in Computer Science. Springer International Publishing; 2014. p. 99-113. Available from: http://link.springer.com/chapter/10.1007/978-3-319-12982-2-8.
-
(2014)
Computational Methods in Systems Biology.
, pp. 99-113
-
-
Liu, B.1
Kong, S.2
Gao, S.3
Zuliani, P.4
Clarke, E.M.5
-
42
-
-
84885985126
-
Checking statistical model calibration based and analysis of bio-pathway models
-
Gupta A, Henzinger TA, editors. Computational Methods in Systems Biology Springer Berlin Heidelber
-
Palaniappan SK, Gyori BM, Liu B, Hsu D, Thiagarajan PS. Statistical Model Checking Based Calibration and Analysis of Bio-pathway Models. In: Gupta A, Henzinger TA, editors. Computational Methods in Systems Biology. No. 8130 in Lecture Notes in Computer Science. Springer Berlin Heidelberg; 2013. p. 120-134. Available from: http://link.springer.com/chapter/10.1007/978-3-642-40708-6-10.
-
(2013)
Lecture Notes in Computer Science
, vol.8130
, pp. 120-134
-
-
Palaniappan, S.K.1
Gyori, B.M.2
Liu, B.3
Hsu, D.4
Thiagarajan, P.S.5
-
43
-
-
38049142307
-
-
Priami C, Plotkin G, editors. Transactions on Computational Systems Biology VI. 4220in Lecture Notes in Computer Science. Springer Berlin Heidelberg Available from
-
Calzone L, Chabrier-Rivier N, Fages F, Soliman S. Machine Learning Biochemical Networks from Temporal Logic Properties. In: Priami C, Plotkin G, editors. Transactions on Computational Systems Biology VI. No. 4220 in Lecture Notes in Computer Science. Springer Berlin Heidelberg; 2006. p. 68-94. Available from: http://link.springer.com/chapter/10.1007/11880646-4.
-
(2006)
BiochemicalMachine Learning Networks from Temporal Logic Properties.
, pp. 68-94
-
-
Calzone, L.1
Chabrier-Rivier, N.2
Fages, F.3
Soliman, S.4
-
44
-
-
70350424435
-
Model-checkingfrom to temporal logic constraint solving
-
Gent IP, editor
-
Fages F, Rizk A. From Model-Checking to Temporal Logic Constraint Solving. In: Gent IP, editor. Principles and Practice of Constraint Programming-CP 2009. No. 5732 in Lecture Notes in Computer Science. Springer Berlin Heidelberg; 2009. p. 319-334. Available from: http://link.springer.com/chapter/ 10.1007/978-3-642-04244-7-26.
-
(2009)
Principles and Practice of Constraint Programming-CP
, vol.2009
, Issue.5732
, pp. 319-334
-
-
Fages, F.1
Rizk, A.2
-
45
-
-
84899700332
-
Robustness analysis of stochastic biochemical systems
-
Apr PMID: 24751941
-
Česka M, Šafránek D, Dražan S, Brim L. Robustness Analysis of Stochastic Biochemical Systems. PLoS ONE. 2014 Apr; 9(4):e94553. doi: 10.1371/journal.pone.0094553 PMID: 24751941
-
(2014)
PLoS ONE
, vol.9
, Issue.4
, pp. e94553
-
-
Česka, M.1
Šafránek, D.2
Dražan, S.3
Brim, L.4
-
46
-
-
57049127120
-
On a continuous degree of satisfaction of temporal logic formulae with applications to systems biology
-
Heiner M, Uhrmacher AM, Editors 5307 in Lecture Notes in Computer Science. Springer Berlin Heidelberg; Available from
-
Rizk A, Batt G, Fages F, Soliman S. On a Continuous Degree of Satisfaction of Temporal Logic Formulae with Applications to Systems Biology. In: Heiner M, Uhrmacher AM, editors. Computational Methods in Systems Biology. No. 5307 in Lecture Notes in Computer Science. Springer Berlin Heidelberg; 2008. p. 251-268. Available from: http://link.springer.com/chapter/10.1007/978-3-540-88562-7-19.
-
(2008)
Computational Methods in Systems Biology.
, pp. 251-268
-
-
Rizk, A.1
Batt, G.2
Fages, F.3
Soliman, S.4
-
47
-
-
66349124255
-
A general computational method for robustness analysis with applications to synthetic gene networks
-
Jun Available from: PMID: 19477984
-
Rizk A, Batt G, Fages F, Soliman S. A general computational method for robustness analysis with applications to synthetic gene networks. Bioinformatics. 2009 Jun; 25(12):i169-i178. Available from: http:// bioinformatics.oxfordjournals.org/content/25/12/i169. doi: 10.1093/bioinformatics/btp200 PMID: 19477984
-
(2009)
Bioinformatics
, vol.25
, Issue.12
, pp. i169-i178
-
-
Rizk, A.1
Batt, G.2
Fages, F.3
Soliman, S.4
-
48
-
-
84885648602
-
Model checking of biological systems
-
Bernardo M, Vink Ed, Pierro AD, Wiklicky H, editors. Springer Berlin Heidelberg; Available from Formal Methods for Dynamical Systems
-
Brim L, Češka M, Šafránek D. Model Checking of Biological Systems. In: Bernardo M, Vink Ed, Pierro AD, Wiklicky H, editors. Formal Methods for Dynamical Systems. No. 7938 in Lecture Notes in Computer Science. Springer Berlin Heidelberg; 2013. p. 63-112. Available from: http://link.springer.com/ chapter/10.1007/978-3-642-38874-3-3.
-
(2013)
Lecture Notes in Computer Science
, vol.7938
, pp. 63-112
-
-
Brim, L.1
Češka, M.2
Šafránek, D.3
-
49
-
-
84927665739
-
Checking model in biology
-
Kulkarni VV, Stan GB, Raman K, editors Springer Netherlands
-
Fisher J, Piterman N. Model Checking in Biology. In: Kulkarni VV, Stan GB, Raman K, editors. A Systems Theoretic Approach to Systems and Synthetic Biology I: Models and System Characterizations. Springer Netherlands; 2014. p. 255-279. Available from: http://link.springer.com/chapter/10.1007/978-94-017-9041-3-10.
-
(2014)
A Systems Theoretic Approach to Systems and Synthetic Biology I: Models and System Characterizations
, pp. 255-279
-
-
Fisher, J.1
Piterman, N.2
-
50
-
-
84943352506
-
Statistical model checking for biological applications
-
Aug
-
Zuliani P. Statistical model checking for biological applications. International Journal on Software Tools for Technology Transfer. 2014 Aug;p. 1-10. Available from: http://link.springer.com/article/10.1007/ s10009-014-0343-0.
-
(2014)
International Journal on Software Tools for Technology Transfer
, pp. 1-10
-
-
Zuliani, P.1
-
51
-
-
70349337272
-
Models on coupling using model-checking: Effects of irinotecan injections on the mammalian cell cycle
-
Degano P, Gorrieri R, Editors Computational Methods in Systems Biology Springer Berlin Heidelberg; Available from
-
Maria ED, Fages F, Soliman S. On Coupling Models Using Model-Checking: Effects of Irinotecan Injections on the Mammalian Cell Cycle. In: Degano P, Gorrieri R, editors. Computational Methods in Systems Biology. No. 5688 in Lecture Notes in Computer Science. Springer Berlin Heidelberg; 2009. p. 142-157. Available from: http://link.springer.com/chapter/10.1007/978-3-642-03845-7-10.
-
(2009)
Lecture Notes in Computer Science
, vol.5688
, pp. 142-157
-
-
Maria, E.D.1
Fages, F.2
Soliman, S.3
-
52
-
-
62649170296
-
Integrated simulation and model-checking for the analysis of biochemical systems
-
Mar
-
Ciocchetta F, Gilmore S, Guerriero ML, Hillston J. Integrated Simulation and Model-Checking for the Analysis of Biochemical Systems. Electronic Notes in Theoretical Computer Science. 2009 Mar; 232:17-38. Available from: http://www.sciencedirect.com/science/article/pii/S157106610900053X. doi: 10.1016/j.entcs.2009.02.048
-
(2009)
Electronic Notes in Theoretical Computer Science
, vol.232
, pp. 17-38
-
-
Ciocchetta, F.1
Gilmore, S.2
Guerriero, M.L.3
Hillston, J.4
-
54
-
-
38049136584
-
-
Calder M, Gilmore S, editors. Computational Methods in Systems Biology. 4695in Lecture Notes in Computer Science. Springer Berlin Heidelberg Available from
-
Gilbert D, Heiner M, Lehrack S. A Unifying Framework for Modelling and Analysing Biochemical Pathways Using Petri Nets. In: Calder M, Gilmore S, editors. Computational Methods in Systems Biology. No. 4695 in Lecture Notes in Computer Science. Springer Berlin Heidelberg; 2007. p. 200-216. Available from: http://link.springer.com/chapter/10.1007/978-3-540-75140-3-14.
-
(2007)
Ramework A Unifying for Modelling and Analysing Biochemical Pathways Using Petri Nets
, pp. 200-216
-
-
Gilbert, D.1
Heiner, M.2
Lehrack, S.3
-
55
-
-
84855960436
-
-
Horimoto K, Nakatsui M, Popov N, editors. Algebraic and Numeric Biology. 6479in Lecture Notes in Computer Science. Springer Berlin Heidelberg Available from
-
Gong H, Zuliani P, Komuravelli A, Faeder JR, Clarke EM. Computational Modeling and Verification of Signaling Pathways in Cancer. In: Horimoto K, Nakatsui M, Popov N, editors. Algebraic and Numeric Biology. No. 6479 in Lecture Notes in Computer Science. Springer Berlin Heidelberg; 2012. p. 117-135. Available from: http://link.springer.com/chapter/10.1007/978-3-642-28067-2-7.
-
(2012)
ModelingComputational and Verification of Signaling Pathways in Cancer.
, pp. 117-135
-
-
Gong, H.1
Zuliani, P.2
Komuravelli, A.3
Faeder, J.R.4
Clarke, E.M.5
-
56
-
-
70450186421
-
-
. Priami C, Back RJ, Petre I, editors. Transactions on Computational Systems Biology XI. 5750in Lecture Notes in Computer Science. Springer Berlin Heidelberg Available from
-
Guerriero ML. Qualitative and Quantitative Analysis of a Bio-PEPA Model of the Gp130/JAK/STAT Signalling Pathway. In: Priami C, Back RJ, Petre I, editors. Transactions on Computational Systems Biology XI. No. 5750 in Lecture Notes in Computer Science. Springer Berlin Heidelberg; 2009. p. 90-115. Available from: http://link.springer.com/chapter/10.1007/978-3-642-04186-0-5.
-
(2009)
Qualitative and Quantitative Analysis of a Bio-PEPA Model of the Gp130/JAK/STAT Signalling Pathway
, pp. 90-115
-
-
Guerriero, M.L.1
-
57
-
-
85027925894
-
Automatic validation of computational models using pseudo-3D spatio-temporal model checking
-
Dec Available from: PMID: 25440773
-
Pârvu O, Gilbert D. Automatic validation of computational models using pseudo-3D spatio-temporal model checking. BMC Systems Biology. 2014 Dec; 8(1):124. Available from: http://www.biomedcentral. com/1752-0509/8/124/abstract. doi: 10.1186/s12918-014-0124-0 PMID: 25440773
-
(2014)
BMCr Systems Biology
, vol.8
, Issue.1
, pp. 124
-
-
Pârvu, O.1
Gilbert, D.2
-
58
-
-
43049085575
-
Multi-scale computational modelling in biology and physiology
-
Jan Available from: PMID: 17888502
-
Southern J, Pitt-Francis J, Whiteley J, Stokeley D, Kobashi H, Nobes R, et al. Multi-scale computational modelling in biology and physiology. Progress in Biophysics and Molecular Biology. 2008 Jan; 96(1-3):60-89. Available from: http://www.sciencedirect.com/science/article/pii/S0079610707000673. doi: 10.1016/j.pbiomolbio.2007.07.019 PMID: 17888502
-
(2008)
Progress in Biophysics and Molecular Biology
, vol.96
, Issue.1-3
, pp. 60-89
-
-
Southern, J.1
Pitt-Francis, J.2
Whiteley, J.3
Stokeley, D.4
Kobashi, H.5
Nobes, R.6
-
59
-
-
84855207965
-
Statistical probabilistic model checking with a focus on time-bounded properties
-
Sep Available from
-
Younes HL, Simmons RG. Statistical probabilistic model checking with a focus on time-bounded properties. Information and Computation. 2006 Sep; 204(9):1368-1409. Available from: http://www. sciencedirect.com/science/article/pii/S0890540106000678. doi: 10.1016/j.ic.2006.05.002
-
(2006)
Information and Computation
, vol.204
, Issue.9
, pp. 1368-1409
-
-
Younes, H.L.1
Simmons, R.G.2
-
60
-
-
0003096318
-
A logic for reasoning about time and reliability
-
Sep Available from
-
Hansson H, Jonsson B. A logic for reasoning about time and reliability. Formal Aspects of Computing. 1994 Sep; 6(5):512-535. Available from: http://link.springer.com/article/10.1007/BF01211866. doi: 10. 1007/BF01211866
-
(1994)
Formal Aspects of Computing
, vol.6
, Issue.5
, pp. 512-535
-
-
Hansson, H.1
Jonsson, B.2
-
61
-
-
41149144239
-
-
Baeten JCM, Mauw S, editors. CONCUR'99 Concurrency Theory. 1664in Lecture Notes in Computer Science. Springer Berlin Heidelberg Available from
-
Baier C, Katoen JP, Hermanns H. Approximative Symbolic Model Checking of Continuous-Time Markov Chains. In: Baeten JCM, Mauw S, editors. CONCUR'99 Concurrency Theory. No. 1664 in Lecture Notes in Computer Science. Springer Berlin Heidelberg; 1999. p. 146-161. Available from: http://link. springer.com/chapter/10.1007/3-540-48320-9-12.
-
(1999)
ModelApproximative Symbolic Checking of Continuous-Time Markov Chains
, pp. 146-161
-
-
Baier, C.1
Katoen, J.P.2
Hermanns, H.3
-
63
-
-
84870824873
-
Revised DBSCAN algorithm to cluster data with dense adjacent clusters
-
Jan Available from
-
Tran TN, Drab K, Daszykowski M. Revised DBSCAN algorithm to cluster data with dense adjacent clusters. Chemometrics and Intelligent Laboratory Systems. 2013 Jan; 120:92-96. Available from: http:// www.sciencedirect.com/science/article/pii/S0169743912002249. doi: 10.1016/j.chemolab.2012.11. 006
-
(2013)
Chemometrics and Intelligent Laboratory Systems
, vol.120
, pp. 92-96
-
-
Tran, T.N.1
Drab, K.2
Daszykowski, M.3
-
65
-
-
84944264717
-
Approximate probabilistic model checking
-
SteffenB., LeviG., editors. Verification, Model Checking, and Abstract Interpretation Springer Berlin Heidelberg
-
Hérault T, Lassaigne R, Magniette F, Peyronnet S. Approximate Probabilistic Model Checking. In: Steffen B, Levi G, editors. Verification, Model Checking, and Abstract Interpretation. No. 2937 in Lecture Notes in Computer Science. Springer Berlin Heidelberg; 2004. p. 73-84. Available from: http://link. springer.com/chapter/10.1007/978-3-540-24622-0-8.
-
(2004)
Lecture Notes in Computer Science
, vol.2937
, pp. 73-84
-
-
Hérault, T.1
Lassaigne, R.2
Magniette, F.3
Peyronnet, S.4
-
66
-
-
0000090155
-
Tests sequential of statistical hypotheses
-
Jun
-
Wald A. Sequential Tests of Statistical Hypotheses. The Annals of Mathematical Statistics. 1945 Jun; 16(2):117-186. Available from: http://projecteuclid.org/DPubS?service=UI&version=1.0&verb= Display&handle=euclid.aoms/1177731118. doi: 10.1214/aoms/1177731118
-
(1945)
The Annals of Mathematical Statistics
, vol.16
, Issue.2
, pp. 117-186
-
-
Wald, A.1
-
67
-
-
26444566947
-
Verification and planning for stochastic processes with asynchronous events [doctor of philosophy]
-
Pittsburgh
-
Younes HLS. Verification and Planning for Stochastic Processes with Asynchronous Events [Doctor of Philosophy]. Carnegie Mellon. Pittsburgh; 2005.
-
(2005)
Carnegie Mellon
-
-
Younes, H.L.S.1
-
69
-
-
35048875856
-
-
Alur R, Peled DA, editors. Computer Aided Verification. 3114in Lecture Notes in Computer Science. Springer Berlin Heidelberg Available from
-
Sen K, Viswanathan M, Agha G. Statistical Model Checking of Black-Box Probabilistic Systems. In: Alur R, Peled DA, editors. Computer Aided Verification. No. 3114 in Lecture Notes in Computer Science. Springer Berlin Heidelberg; 2004. p. 202-215. Available from: http://link.springer.com/chapter/ 10.1007/978-3-540-27813-9-16.
-
(2004)
CheckingStatistical Model of Black-Box Probabilistic Systems.
, pp. 202-215
-
-
Sen, K.1
Viswanathan, M.2
Agha, G.3
-
70
-
-
26444576780
-
-
Computer Aided Verification. 3576 in Lecture Notes in Computer Science. Springer Berlin Heidelberg Available from
-
Younes HLS. Probabilistic Verification for "Black-Box" Systems. In: Etessami K, Rajamani SK, editors. Computer Aided Verification. No. 3576 in Lecture Notes in Computer Science. Springer Berlin Heidelberg; 2005. p. 253-265. Available from: http://link.springer.com/chapter/10.1007/11513988-25.
-
(2005)
Verification Probabilistic for Black-BoxSystems Etessami K, Rajamani SK, Editors
, pp. 253-265
-
-
Younes, H.L.S.1
-
71
-
-
70349367247
-
Queries generalized model Bayesian statistical checking in dynamic Bayesian networks: Application to personalized medicine
-
California: Life Sciences Society
-
Langmead CJ. Generalized Queries and Bayesian Statistical Model Checking in Dynamic Bayesian Networks: Application to Personalized Medicine. In: Proc. of the 8th International Conference on Computational Systems Bioinformatics (CSB). California: Life Sciences Society; 2009. p. 201-212.
-
(2009)
th International Conference on Computational Systems Bioinformatics (CSB).
, pp. 201-212
-
-
Langmead, C.J.1
-
72
-
-
70349319988
-
-
Springer Berlin Heidelberg; Available from
-
Jha SK, Clarke EM, Langmead CJ, Legay A, Platzer A, Zuliani P. A Bayesian Approach to Model Checking Biological Systems. In: Degano P, Gorrieri R, editors. Computational Methods in Systems Biology. No. 5688 in Lecture Notes in Computer Science. Springer Berlin Heidelberg; 2009. p. 218-234. Available from: http://link.springer.com/chapter/10.1007/978-3-642-03845-7-15.
-
(2009)
ApproachA Bayesian to Model Checking Biological Systems. Degano P, Gorrieri R, Editors. Computational Methods in Systems Biology. 5688in Lecture Notes in Computer Science.
, pp. 218-234
-
-
Jha, S.K.1
Clarke, E.M.2
Langmead, C.J.3
Legay, A.4
Platzer, A.5
Zuliani, P.6
-
73
-
-
84969547250
-
Checking statistical model for complex stochastic models in systems biology
-
Available from
-
Jha SK, Clarke EM, Langmead CJ, Legay A, Platzer A, Zuliani P. Statistical Model Checking for Complex Stochastic Models in Systems Biology. Carnegie Mellon University; 2009. Available from: http:// repository.cmu.edu/cgi/viewcontent.cgi?article=2244&context=compsci.
-
(2009)
Carnegie Mellon University
-
-
Jha, S.K.1
Clarke, E.M.2
Langmead, C.J.3
Legay, A.4
Platzer, A.5
ZulianiP6
-
74
-
-
80055051421
-
COSMOS: A statistical model checker for the hybrid automata stochastic logic
-
Ballarini P, Djafri H, Duflot M, Haddad S, Pekergin N. COSMOS: A Statistical Model Checker for the Hybrid Automata Stochastic Logic. In: 2011 Eighth International Conference on Quantitative Evaluation of Systems (QEST); 2011. p. 143-144.
-
2011Eighth International Conference on Quantitative Evaluation of Systems (QEST)
, vol.2011
, pp. 143-144
-
-
Ballarini, P.1
Djafri, H.2
Duflot, M.3
Haddad, S.4
Pekergin, N.5
-
75
-
-
84859299128
-
-
Flanagan C, König B, editors. Tools and Algorithms for the Construction and Analysis of Systems. 7214in Lecture Notes in Computer Science. Springer Berlin Heidelberg; Available from
-
Jegourel C, Legay A, Sedwards S. A Platform for High Performance Statistical Model Checking-PLASMA. In: Flanagan C, König B, editors. Tools and Algorithms for the Construction and Analysis of Systems. No. 7214 in Lecture Notes in Computer Science. Springer Berlin Heidelberg; 2012. p. 498-503. Available from: http://link.springer.com/chapter/10.1007/978-3-642-28756-5-37.
-
(2012)
.A PlatformA. for High Performance Statistical Model Checking-PLASMA
, pp. 498-503
-
-
Jegourel, C.1
Legay, A.2
SedwardsS3
-
76
-
-
79960351824
-
-
Gopalakrishnan G, Qadeer S, editors. Computer Aided Verification.
-
Kwiatkowska M, Norman G, Parker D. 4.0: Verification of Probabilistic Real-Time Systems. In: Gopalakrishnan G, Qadeer S, editors. Computer Aided Verification. No. 6806 in Lecture Notes in Computer Science. Snowbird, UT, USA: Springer Berlin Heidelberg; 2011. p. 585-591. Available from: http://link. springer.com/chapter/10.1007/978-3-642-22110-1-47.
-
(2011)
4.0: Verification of Probabilistic Real-Time Systems.
, Issue.6806
, pp. 585-591
-
-
Kwiatkowska, M.1
Norman, G.2
Parker, D.3
-
77
-
-
84944695735
-
-
th Workshop on Quantitative Aspects of Programming Languages and Systems, QAPL 2012, Tallinn, Estonia, 31 March and 1 April 2012 Available from
-
Bulychev PE, David A, Larsen KG, Mikucionis M, Poulsen DB, Legay A, et al. UPPAAL-SMC: Statistical Model Checking for Priced Timed Automata. In: Proceedings 10th Workshop on Quantitative Aspects of Programming Languages and Systems, QAPL 2012, Tallinn, Estonia, 31 March and 1 April 2012.; 2012. p. 1-16. Available from: http://dx.doi.org/10.4204/EPTCS.85.1.
-
(2012)
UPPAAL-SMC: Statistical Model Checking for Priced Timed Automata.
, pp. 1-16
-
-
Bulychev, P.E.1
David, A.2
Larsen, K.G.3
Mikucionis, M.4
Poulsen, D.B.5
Legay, A.6
-
78
-
-
26444453810
-
-
Etessami K, Rajamani SK, editors. Computer Aided Verification. 3576in Lecture Notes in Computer Science. Springer Berlin Heidelberg Available from
-
Younes HLS. Ymer: A Statistical Model Checker. In: Etessami K, Rajamani SK, editors. Computer Aided Verification. No. 3576 in Lecture Notes in Computer Science. Springer Berlin Heidelberg; 2005. p. 429-433. Available from: http://link.springer.com/chapter/10.1007/11513988-43.
-
(2005)
Ymer: A Statistical Model Checker.
, pp. 429-433
-
-
Younes, H.L.S.1
-
80
-
-
0346249699
-
Minimal haemodynamic system model including ventricular interaction and valve dynamics
-
Mar
-
Smith BW, Chase JG, Nokes RI, Shaw GM, Wake G. Minimal haemodynamic system model including ventricular interaction and valve dynamics. Medical Engineering & Physics. 2004 Mar; 26(2):131-139. doi: 10.1016/j.medengphy.2003.10.001
-
(2004)
Medical Engineering & Physics
, vol.26
, Issue.2
, pp. 131-139
-
-
Smith, B.W.1
Chase, J.G.2
Nokes, R.I.3
Shaw, G.M.4
Wake, G.5
-
81
-
-
77953223380
-
Identifying physiological origins of baroreflex dysfunction in salt-sensitive hypertension in the Dahl SS rat
-
Jun PMID: 20354102
-
Bugenhagen SM, Cowley AW, Beard DA. Identifying physiological origins of baroreflex dysfunction in salt-sensitive hypertension in the Dahl SS rat. Physiological Genomics. 2010 Jun; 42(1):23-41. doi: 10. 1152/physiolgenomics.00027.2010 PMID: 20354102
-
(2010)
Physiological Genomics
, vol.42
, Issue.1
, pp. 23-41
-
-
Bugenhagen, S.M.1
Cowley, A.W.2
Beard, D.A.3
-
82
-
-
84893596337
-
Morpheus: Auser-friendly modeling environment for multiscale and multicellular systems biology
-
May Available from: PMID: 24443380
-
Starru J, Back Wd, Brusch L, Deutsch A. Morpheus: a user-friendly modeling environment for multiscale and multicellular systems biology. Bioinformatics. 2014 May; 30(9):1331-1332. Available from: http://bioinformatics.oxfordjournals.org/content/30/9/1331. doi: 10.1093/bioinformatics/btt772 PMID: 24443380
-
(2014)
Bioinformatics
, vol.30
, Issue.9
, pp. 1331-1332
-
-
Starru, J.1
Back, W.2
Brusch, L.3
Deutsch, A.4
-
83
-
-
84969542395
-
-
Morpheus examples;. Available from: Examples cited
-
Starruβ, J, Back Wd. Morpheus examples;. Available from: http://imc.zih.tu-dresden.de/wiki/morpheus/ doku.php?id=examples:examples [cited 2015-05-20].
-
(2015)
, pp. 05-20
-
-
Starru, J.1
Back, W.D.2
-
84
-
-
2942550479
-
-
British Journal of Sports Medicine Jun Available from: PMID: 15155418
-
Scott A, Khan KM, Cook JL, Duronio V. What is "inflammation"? Are we ready to move beyond Celsus? British Journal of Sports Medicine. 2004 Jun; 38(3):248-249. Available from: http://bjsm.bmj.com/ content/38/3/248. doi: 10.1136/bjsm.2003.011221 PMID: 15155418
-
(2004)
What is inflammationAre We Ready to Move beyond Celsus
, vol.38
, Issue.3
, pp. 248-249
-
-
Scott, A.1
Khan, K.M.2
Cook, J.L.3
Duronio, V.4
-
85
-
-
84899111725
-
The continuous spatiotemporal model (CSTM) as an exhaustive framework for multi-scale spatio-temporal analysis
-
886329
-
Van de Weghe N, de Roo B, Qiang Y, Versichele M, Neutens T, de Maeyer P. The continuous spatiotemporal model (CSTM) as an exhaustive framework for multi-scale spatio-temporal analysis. International Journal of Geographical Information Science. 2014; 28(5):1047-1060. doi: 10.1080/13658816. 2014.886329
-
(2014)
International Journal of Geographical Information Science
, vol.28
, Issue.5
, pp. 1047-1060
-
-
Van De, W.N.1
De Roo, B.2
Qiang, Y.3
Versichele, M.4
Neutens, T.5
De Maeyer, P.6
-
86
-
-
61949483082
-
Learning and detecting emergent behavior in networks of cardiac myocytes
-
ACM Mar Available from
-
Grosu R, Smolka SA, Corradini F, Wasilewska A, Entcheva E, Bartocci E. Learning and Detecting Emergent Behavior in Networks of Cardiac Myocytes. Commun ACM. 2009 Mar; 52(3):97-105. Available from: http://doi.acm.org/10.1145/1467247.1467271. doi: 10.1145/1467247.1467271
-
(2009)
Commun
, vol.52
, Issue.3
, pp. 97-105
-
-
Grosu, R.1
Smolka, S.A.2
Corradini, F.3
Wasilewska, A.4
Entcheva, E.5
Bartocci, E.6
-
88
-
-
84940653417
-
SpaTeL: A novel spatial-temporal logic and its applications to networked systems
-
HSCC '15. New York, NY, USA: ACM; Available from
-
Haghighi I, Jones A, Kong Z, Bartocci E, Gros R, Belta C. SpaTeL: A Novel Spatial-temporal Logic and Its Applications to Networked Systems. In: Proceedings of the 18th International Conference on Hybrid Systems: Computation and Control. HSCC '15. New York, NY, USA: ACM; 2015. p. 189-198. Available from: http://doi.acm.org/10.1145/2728606.2728633.
-
(2015)
th International Conference on Hybrid Systems: Computation and Control.
, pp. 189-198
-
-
Haghighi, I.1
Jones, A.2
Kong, Z.3
Bartocci, E.4
Gros, R.5
Belta, C.6
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