-
1
-
-
0142037521
-
Model building and model checking for biochemical processes
-
Antoniotti, M., Policriti, A., Ugel, N., Mishra, B.: Model building and model checking for biochemical processes. Cell Biochem. Biophys. 38(3), 271-286 (2003)
-
(2003)
Cell Biochem. Biophys
, vol.38
, Issue.3
, pp. 271-286
-
-
Antoniotti, M.1
Policriti, A.2
Ugel, N.3
Mishra, B.4
-
2
-
-
84951056897
-
Symbolic model checking for probabilistic processes
-
Degano, P, Gorrieri, R, Marchetti-Spaccamela, A, eds, ICALP 1997, Springer, Heidelberg
-
Baier, C., Clarke, E.M., Hartonas-Garmhausen, V., Kwiatkowska, M.Z., Ryan, M.: Symbolic model checking for probabilistic processes. In: Degano, P., Gorrieri, R., Marchetti-Spaccamela, A. (eds.) ICALP 1997. LNCS, vol. 1256, pp. 430-440. Springer, Heidelberg (1997)
-
(1997)
LNCS
, vol.1256
, pp. 430-440
-
-
Baier, C.1
Clarke, E.M.2
Hartonas-Garmhausen, V.3
Kwiatkowska, M.Z.4
Ryan, M.5
-
3
-
-
0042349303
-
Model-checking algorithms for continuous-time markov chains
-
Baier, C., Haverkort, B.R., Hermanns, H., Katoen, J.-P.: Model-checking algorithms for continuous-time markov chains. IEEE Trans. Software Eng. 29(6), 524- 541 (2003)
-
(2003)
IEEE Trans. Software Eng
, vol.29
, Issue.6
, pp. 524-541
-
-
Baier, C.1
Haverkort, B.R.2
Hermanns, H.3
Katoen, J.-P.4
-
5
-
-
0034688220
-
Biological rhythms: Circadian clocks limited by noise
-
Barkai, N., Leibler, S.: Biological rhythms: Circadian clocks limited by noise. Nature 403, 267-268 (2000)
-
(2000)
Nature
, vol.403
, pp. 267-268
-
-
Barkai, N.1
Leibler, S.2
-
6
-
-
84860513120
-
Validation of qualitative models of genetic regulatory networks by model checking: Analysis of the nutritional stress response in Escherichia coli
-
Batt, G., Ropers, D., de Jong, H., Geiselmann, J., Mateescu, R., Page, M., Schneider, D.: Validation of qualitative models of genetic regulatory networks by model checking: analysis of the nutritional stress response in Escherichia coli. Bioinformatics 25(1), i19-i28 (2005)
-
(2005)
Bioinformatics
, vol.25
, Issue.1
-
-
Batt, G.1
Ropers, D.2
de Jong, H.3
Geiselmann, J.4
Mateescu, R.5
Page, M.6
Schneider, D.7
-
7
-
-
70349369836
-
A note on the limiting relative efficiency of the Wald sequential probability ratio test
-
Bechhofer, R.: A note on the limiting relative efficiency of the Wald sequential probability ratio test. J. Amer. Statist. Assoc. 55, 660-663 (1960)
-
(1960)
J. Amer. Statist. Assoc
, vol.55
, pp. 660-663
-
-
Bechhofer, R.1
-
8
-
-
33845229356
-
Modelling the influence of RKIP on the ERK signalling pathway using the stochastic process algebra PEPA
-
in press
-
Calder, M., Gilmore, S., Hillston, J.: Modelling the influence of RKIP on the ERK signalling pathway using the stochastic process algebra PEPA. Transactions on Computational Systems Biology (2006) (in press)
-
(2006)
Transactions on Computational Systems Biology
-
-
Calder, M.1
Gilmore, S.2
Hillston, J.3
-
9
-
-
33845226621
-
Analysis of signalling pathways using the PRISM model checker
-
Calder, M., Vyshemirsky, V., Gilbert, D., Orton, R.: Analysis of signalling pathways using the PRISM model checker. In: Proc. Computational Methods in Systems Biology (CMSB 2005), pp. 179-190 (2005)
-
(2005)
Proc. Computational Methods in Systems Biology (CMSB
, pp. 179-190
-
-
Calder, M.1
Vyshemirsky, V.2
Gilbert, D.3
Orton, R.4
-
10
-
-
33845196533
-
Abstract machines of systems biology
-
Priami, C, Merelli, E, Gonzalez, P, Omicini, A, eds, Springer, Heidelberg
-
Cardelli, L.: Abstract machines of systems biology. In: Priami, C., Merelli, E., Gonzalez, P., Omicini, A. (eds.) Transactions on Computational Systems Biology III. LNCS (LNBI), vol. 3737, pp. 145-168. Springer, Heidelberg (2005)
-
(2005)
Transactions on Computational Systems Biology III. LNCS (LNBI)
, vol.3737
, pp. 145-168
-
-
Cardelli, L.1
-
11
-
-
84958602011
-
-
Chabrier, N., Fages, F.: Symbolic Model Checking of Biochemical Networks. In: Priami, C. (ed.) CMSB 2003. LNCS, 2602, pp. 149-162. Springer, Heidelberg (2003)
-
Chabrier, N., Fages, F.: Symbolic Model Checking of Biochemical Networks. In: Priami, C. (ed.) CMSB 2003. LNCS, vol. 2602, pp. 149-162. Springer, Heidelberg (2003)
-
-
-
-
12
-
-
34250190790
-
On probabilistic computation tree logic
-
Baier, C, Haverkort, B.R, Hermanns, H, Katoen, J.-P, Siegle, M, eds, Validation of Stochastic Systems, Springer, Heidelberg
-
Ciesinski, F., Größer, M.: On probabilistic computation tree logic. In: Baier, C., Haverkort, B.R., Hermanns, H., Katoen, J.-P., Siegle, M. (eds.) Validation of Stochastic Systems. LNCS, vol. 2925, pp. 147-188. Springer, Heidelberg (2004)
-
(2004)
LNCS
, vol.2925
, pp. 147-188
-
-
Ciesinski, F.1
Größer, M.2
-
13
-
-
85037030721
-
Design and synthesis of synchronization skeletons using branching-time temporal logic
-
London, UK, pp, Springer, Heidelberg
-
Clarke, E.M., Emerson, E.A.: Design and synthesis of synchronization skeletons using branching-time temporal logic. In: Logic of Programs, Workshop, London, UK, pp. 52-71. Springer, Heidelberg (1982)
-
(1982)
Logic of Programs, Workshop
, pp. 52-71
-
-
Clarke, E.M.1
Emerson, E.A.2
-
14
-
-
57049089108
-
-
Clarke, E.M., Faeder, J.R., Langmead, C.J., Harris, L.A., Jha, S.K., Legay, A.: Statistical model checking in biolab: Applications to the automated analysis of t-cell receptor signaling pathway. In: Heiner, M., Uhrmacher, A.M. (eds.) CMSB 2008. LNCS (LNBI), 5307, pp. 231-250. Springer, Heidelberg (2008)
-
Clarke, E.M., Faeder, J.R., Langmead, C.J., Harris, L.A., Jha, S.K., Legay, A.: Statistical model checking in biolab: Applications to the automated analysis of t-cell receptor signaling pathway. In: Heiner, M., Uhrmacher, A.M. (eds.) CMSB 2008. LNCS (LNBI), vol. 5307, pp. 231-250. Springer, Heidelberg (2008)
-
-
-
-
15
-
-
0003962322
-
-
MIT Press, Cambridge
-
Clarke, E.M., Grumberg, O., Peled, D.A.: Model Checking. MIT Press, Cambridge (1999)
-
(1999)
Model Checking
-
-
Clarke, E.M.1
Grumberg, O.2
Peled, D.A.3
-
16
-
-
84976740260
-
The complexity of probabilistic verification
-
Courcoubetis, C., Yannakakis, M.: The complexity of probabilistic verification. Journal of the ACM 42(4), 857-907 (1995)
-
(1995)
Journal of the ACM
, vol.42
, Issue.4
, pp. 857-907
-
-
Courcoubetis, C.1
Yannakakis, M.2
-
17
-
-
0001501154
-
Quantifying prior opinion
-
Bernardo, J.M, De Groot, M.H, Lindley, D.B, Smith, A.F.M, eds, Elsevier Science Publisher, Amsterdam
-
Diaconis, P., Ylvisaker, D.: Quantifying prior opinion. In: Bernardo, J.M., De Groot, M.H., Lindley, D.B., Smith, A.F.M. (eds.) Bayesian Statistics 2: Proceedings of the 2nd Valencia International Meeting. Elsevier Science Publisher, Amsterdam (1985)
-
(1985)
Bayesian Statistics 2: Proceedings of the 2nd Valencia International Meeting
-
-
Diaconis, P.1
Ylvisaker, D.2
-
18
-
-
33745606245
-
Temporal logic constraints in the biochemical abstract machine biocham
-
Hill, P.M, ed, LOPSTR 2005, Springer, Heidelberg
-
Fages, F.: Temporal logic constraints in the biochemical abstract machine biocham. In: Hill, P.M. (ed.) LOPSTR 2005. LNCS, vol. 3901, pp. 1-5. Springer, Heidelberg (2006)
-
(2006)
LNCS
, vol.3901
, pp. 1-5
-
-
Fages, F.1
-
20
-
-
13844309568
-
Computational insights into caenorhabditis elegans vulval development
-
Fisher, J., Piterman, N., Hubbard, E.J., Stern, M.J., Harel, D.: Computational insights into caenorhabditis elegans vulval development. Proc. Natl. Acad. Sci. U S A 102(6), 1951-1956 (2005)
-
(2005)
Proc. Natl. Acad. Sci. U S A
, vol.102
, Issue.6
, pp. 1951-1956
-
-
Fisher, J.1
Piterman, N.2
Hubbard, E.J.3
Stern, M.J.4
Harel, D.5
-
21
-
-
0004268444
-
-
Ghosh, B, Sen, P, eds, Dekker, New York
-
Ghosh, B., Sen, P. (eds.): Handbook of sequential analysis. Dekker, New York (1991)
-
(1991)
Handbook of sequential analysis
-
-
-
22
-
-
33645429016
-
Exact stochastic simulation of coupled chemical reactions
-
Gillespie, D.T.: Exact stochastic simulation of coupled chemical reactions. The Journal of Physical Chemistry 81(25), 2340-2361 (1977)
-
(1977)
The Journal of Physical Chemistry
, vol.81
, Issue.25
, pp. 2340-2361
-
-
Gillespie, D.T.1
-
23
-
-
24644470653
-
-
Grosu, R., Smolka, S.: Monte Carlo Model Checking. In: CAV, pp. 271-286 (2005)
-
Grosu, R., Smolka, S.: Monte Carlo Model Checking. In: CAV, pp. 271-286 (2005)
-
-
-
-
24
-
-
33845224003
-
-
Heath, J., Kwiatkowska, M., Norman, G., Parker, D., Tymchyshyn, O.: Probabilistic model checking of complex biological pathways. In: Priami, C. (ed.) CMSB 2006. LNCS (LNBI), 4210, pp. 32-47. Springer, Heidelberg (2006)
-
Heath, J., Kwiatkowska, M., Norman, G., Parker, D., Tymchyshyn, O.: Probabilistic model checking of complex biological pathways. In: Priami, C. (ed.) CMSB 2006. LNCS (LNBI), vol. 4210, pp. 32-47. Springer, Heidelberg (2006)
-
-
-
-
25
-
-
38649122071
-
Probabilistic model checking of complex biological pathways
-
Heath, J., Kwiatkowska, M., Norman, G., Parker, D., Tymchyshyn, O.: Probabilistic model checking of complex biological pathways. Theoretical Computer Science 319(3), 239-257 (2008)
-
(2008)
Theoretical Computer Science
, vol.319
, Issue.3
, pp. 239-257
-
-
Heath, J.1
Kwiatkowska, M.2
Norman, G.3
Parker, D.4
Tymchyshyn, O.5
-
26
-
-
84944264717
-
Approximate probabilistic model checking
-
Steffen, B, Levi, G, eds, VMCAI 2004, Springer, Heidelberg
-
Hérault, T., Lassaigne, R., Magniette, F., Peyronnet, S.: Approximate probabilistic model checking. In: Steffen, B., Levi, G. (eds.) VMCAI 2004. LNCS, vol. 2937, pp. 73-84. Springer, Heidelberg (2004)
-
(2004)
LNCS
, vol.2937
, pp. 73-84
-
-
Hérault, T.1
Lassaigne, R.2
Magniette, F.3
Peyronnet, S.4
-
27
-
-
33745802027
-
PRISM: A tool for automatic verification of probabilistic systems
-
Hermanns, H, Palsberg, J, eds, TACAS 2006, Springer, Heidelberg
-
Hinton, A., Kwiatkowska, M., Norman, G., Parker, D.: PRISM: A tool for automatic verification of probabilistic systems. In: Hermanns, H., Palsberg, J. (eds.) TACAS 2006. LNCS, vol. 3920, pp. 441-444. Springer, Heidelberg (2006)
-
(2006)
LNCS
, vol.3920
, pp. 441-444
-
-
Hinton, A.1
Kwiatkowska, M.2
Norman, G.3
Parker, D.4
-
29
-
-
70349373775
-
-
Jha, S.K., Clarke, E.M., Langmead, C.J., Legay, A., Platzer, A., Zuliani, P.: A bayesian approach to model checking biological systems. Technical Report CMUCS- 09-110, Computer Science Department, Carnegie Mellon University (2009)
-
Jha, S.K., Clarke, E.M., Langmead, C.J., Legay, A., Platzer, A., Zuliani, P.: A bayesian approach to model checking biological systems. Technical Report CMUCS- 09-110, Computer Science Department, Carnegie Mellon University (2009)
-
-
-
-
31
-
-
16244397718
-
-
QEST, pp, IEEE, Los Alamitos
-
Kwiatkowska, M.Z., Norman, G., Parker, D.: Prism 2.0: A tool for probabilistic model checking. In: QEST, pp. 322-323. IEEE, Los Alamitos (2004)
-
(2004)
Prism 2.0: A tool for probabilistic model checking
, pp. 322-323
-
-
Kwiatkowska, M.Z.1
Norman, G.2
Parker, D.3
-
32
-
-
70349367247
-
Generalized Queries and Bayesian Statistical Model Checking in Dynamic Bayesian Networks: Application to Personalized Medicine
-
Langmead, C.J.: Generalized Queries and Bayesian Statistical Model Checking in Dynamic Bayesian Networks: Application to Personalized Medicine. In: Proc. 8th Ann. Intnl Conf. on Comput. Sys. Bioinf. (CSB), pp. 201-212 (2009)
-
(2009)
Proc. 8th Ann. Intnl Conf. on Comput. Sys. Bioinf. (CSB)
, pp. 201-212
-
-
Langmead, C.J.1
-
34
-
-
0029028963
-
Circuit simulation of genetic networks
-
McAdams, H., Shapiro, L.: Circuit simulation of genetic networks. Science 269, 650-656 (1995)
-
(1995)
Science
, vol.269
, pp. 650-656
-
-
McAdams, H.1
Shapiro, L.2
-
35
-
-
84976730945
-
Proving liveness properties of concurrent programs
-
Owicki, S.S., Lamport, L.: Proving liveness properties of concurrent programs. ACM Trans. Program. Lang. Syst. 4(3), 455-495 (1982)
-
(1982)
ACM Trans. Program. Lang. Syst
, vol.4
, Issue.3
, pp. 455-495
-
-
Owicki, S.S.1
Lamport, L.2
-
36
-
-
85047040703
-
-
Pnueli, A.: The temporal logic of programs. In: FOCS, pp. 46-57. IEEE, Los Alamitos (1977)
-
Pnueli, A.: The temporal logic of programs. In: FOCS, pp. 46-57. IEEE, Los Alamitos (1977)
-
-
-
-
37
-
-
0035888407
-
Application of a stochastic name-passing calculus to representation and simulation of molecular processes
-
Priami, C., Regev, A., Shapiro, E., Silverman, W.: Application of a stochastic name-passing calculus to representation and simulation of molecular processes. Inf. Process. Lett. 80(1), 25-31 (2001)
-
(2001)
Inf. Process. Lett
, vol.80
, Issue.1
, pp. 25-31
-
-
Priami, C.1
Regev, A.2
Shapiro, E.3
Silverman, W.4
-
38
-
-
43849093655
-
Toward verified biological models
-
Sadot, A., Fisher, J., Barak, D., Admanit, Y., Stern, M.J., Hubbard, E.J.A., Harel, D.: Toward verified biological models. IEEE/ACM Transactions on Computational Biology and Bioinformatics 5(2), 223-234 (2008)
-
(2008)
IEEE/ACM Transactions on Computational Biology and Bioinformatics
, vol.5
, Issue.2
, pp. 223-234
-
-
Sadot, A.1
Fisher, J.2
Barak, D.3
Admanit, Y.4
Stern, M.J.5
Hubbard, E.J.A.6
Harel, D.7
-
39
-
-
35048875856
-
-
Sen, K., Viswanathan, M., Agha, G.: Statistical model checking of black-box probabilistic systems. In: Alur, R., Peled, D.A. (eds.) CAV 2004. LNCS, 3114, pp. 202-215. Springer, Heidelberg (2004)
-
Sen, K., Viswanathan, M., Agha, G.: Statistical model checking of black-box probabilistic systems. In: Alur, R., Peled, D.A. (eds.) CAV 2004. LNCS, vol. 3114, pp. 202-215. Springer, Heidelberg (2004)
-
-
-
-
40
-
-
26444499465
-
-
Sen, K., Viswanathan, M., Agha, G.: On statistical model checking of stochastic systems. In: Etessami, K., Rajamani, S.K. (eds.) CAV 2005. LNCS, 3576, pp. 266-280. Springer, Heidelberg (2005)
-
Sen, K., Viswanathan, M., Agha, G.: On statistical model checking of stochastic systems. In: Etessami, K., Rajamani, S.K. (eds.) CAV 2005. LNCS, vol. 3576, pp. 266-280. Springer, Heidelberg (2005)
-
-
-
-
41
-
-
0037197850
-
Mechanisms of noise-resistance in genetic oscillators
-
Vilar, J., Kueh, H.-Y., Barkai, N., Leibler, S.: Mechanisms of noise-resistance in genetic oscillators. Proc. Nat. Acad. Sci. USA 99(9), 5988-5992 (2002)
-
(2002)
Proc. Nat. Acad. Sci. USA
, vol.99
, Issue.9
, pp. 5988-5992
-
-
Vilar, J.1
Kueh, H.-Y.2
Barkai, N.3
Leibler, S.4
-
42
-
-
0000090155
-
Sequential tests of statistical hypotheses
-
Wald, A.: Sequential tests of statistical hypotheses. Annals of Mathematical Statistics 16(2), 117-186 (1945)
-
(1945)
Annals of Mathematical Statistics
, vol.16
, Issue.2
, pp. 117-186
-
-
Wald, A.1
-
44
-
-
0141703270
-
A quantitative characterization of the yeast heterotrimeric g protein cycle
-
Yi, T.M., Kitano, H., Simon, M.I.: A quantitative characterization of the yeast heterotrimeric g protein cycle. Proc. Natl. Acad. Sci. USA 100(19), 10764-10769 (2003)
-
(2003)
Proc. Natl. Acad. Sci. USA
, vol.100
, Issue.19
, pp. 10764-10769
-
-
Yi, T.M.1
Kitano, H.2
Simon, M.I.3
-
45
-
-
33747766605
-
Numerical vs. statistical probabilistic model checking
-
Younes, H.L.S., Kwiatkowska, M.Z., Norman, G., Parker, D.: Numerical vs. statistical probabilistic model checking. STTT 8(3), 216-228 (2006)
-
(2006)
STTT
, vol.8
, Issue.3
, pp. 216-228
-
-
Younes, H.L.S.1
Kwiatkowska, M.Z.2
Norman, G.3
Parker, D.4
-
46
-
-
84921391802
-
-
Younes, H.L.S., Simmons, R.G.: Probabilistic verification of discrete event systems using acceptance sampling. In: Brinksma, E., Larsen, K.G. (eds.) CAV 2002. LNCS, 2404, pp. 223-235. Springer, Heidelberg (2002)
-
Younes, H.L.S., Simmons, R.G.: Probabilistic verification of discrete event systems using acceptance sampling. In: Brinksma, E., Larsen, K.G. (eds.) CAV 2002. LNCS, vol. 2404, pp. 223-235. Springer, Heidelberg (2002)
-
-
-
-
47
-
-
84855207965
-
Statistical probabilistic model checking with a focus on time-bounded properties
-
Younes, H.L.S., Simmons, R.G.: Statistical probabilistic model checking with a focus on time-bounded properties. Information and Computation 204(9), 1368- 1409 (2006)
-
(2006)
Information and Computation
, vol.204
, Issue.9
, pp. 1368-1409
-
-
Younes, H.L.S.1
Simmons, R.G.2
|