메뉴 건너뛰기




Volumn 1, Issue , 2015, Pages 324-332

PeakSeg: Constrained optimal segmentation and supervised penalty learning for peak detection in count data

Author keywords

[No Author keywords available]

Indexed keywords

ALGORITHMS; ARTIFICIAL INTELLIGENCE; INFERENCE ENGINES; LEARNING SYSTEMS; MAXIMUM LIKELIHOOD; SUPERVISED LEARNING;

EID: 84969528644     PISSN: None     EISSN: None     Source Type: Conference Proceeding    
DOI: None     Document Type: Conference Paper
Times cited : (22)

References (20)
  • 1
    • 0000501656 scopus 로고
    • Information theory as an extension of the maximum likelihood principle
    • B. Petrov and F. Csaki, editors. Akademiai Kiado, Budapest
    • H. Akaike. Information theory as an extension of the maximum likelihood principle. In B. Petrov and F. Csaki, editors, Second International Symposium on Information Theory, pages 267-281. Akademiai Kiado, Budapest, 1973.
    • (1973) Second International Symposium on Information Theory , pp. 267-281
    • Akaike, H.1
  • 2
    • 61749091779 scopus 로고    scopus 로고
    • Data-driven calibration of penalties for least-squares regression
    • S. Arlot and P. Massart. Data-driven calibration of penalties for least-squares regression. The Journal of Machine Learning Research, 10: 245-279, 2009.
    • (2009) The Journal of Machine Learning Research , vol.10 , pp. 245-279
    • Arlot, S.1    Massart, P.2
  • 3
    • 84890027299 scopus 로고    scopus 로고
    • HMCan: A method for detecting chromatin modifications in cancer samples using ChlP-seq data
    • H. Ashoor, A. Herault, A. Kamoun, F. Radvanyi, V. B. Ba-jic, E. Barillot, and V. Boeva. HMCan: a method for detecting chromatin modifications in cancer samples using ChlP-seq data. Bioinformatics, 29 (23): 2979-2986, 2013.
    • (2013) Bioinformatics , vol.29 , Issue.23 , pp. 2979-2986
    • Ashoor, H.1    Herault, A.2    Kamoun, A.3    Radvanyi, F.4    Bajic, V.B.5    Barillot, E.6    Boeva, V.7
  • 5
    • 84945709924 scopus 로고
    • On the approximation of curves by line segments using dynamic programming
    • June
    • R. Bellman. On the approximation of curves by line segments using dynamic programming. Commun. ACM, 4 (6): 284-, June 1961.
    • (1961) Commun. ACM , vol.4 , Issue.6 , pp. 284
    • Bellman, R.1
  • 10
    • 85006306469 scopus 로고    scopus 로고
    • Segmentation of the Poisson and negative binomial rate models: A penalized estimator
    • A. Cleynen and E. Lebarbier. Segmentation of the Poisson and negative binomial rate models: a penalized estimator. ESAIM.PS, 18: 750-769, 2014.
    • (2014) ESAIM.PS , vol.18 , pp. 750-769
    • Cleynen, A.1    Lebarbier, E.2
  • 13
    • 84938581946 scopus 로고    scopus 로고
    • Learning sparse penalties for change-point detection using max margin interval regression
    • G. Rigaill, T. Hocking, J.-P. Vert, and F. Bach. Learning sparse penalties for change-point detection using max margin interval regression. In Proc. 30th ICML, pages 172-180, 2013.
    • (2013) Proc. 30th ICML , pp. 172-180
    • Rigaill, G.1    Hocking, T.2    Vert, J.-P.3    Bach, F.4
  • 14
    • 84969547240 scopus 로고    scopus 로고
    • A manually curated ChlP-seq benchmark demonstrates room for improvement in current peak-finder programs
    • gkql
    • M. B. Rye, P. Saetrom, and F. Drablos. A manually curated ChlP-seq benchmark demonstrates room for improvement in current peak-finder programs. Nucleic acids research, page gkql 187, 2010.
    • (2010) Nucleic Acids Research , pp. 187
    • Rye, M.B.1    Saetrom, P.2    Drablos, F.3
  • 15
    • 0000120766 scopus 로고
    • Estimating the dimension of a model
    • G. Schwarz. Estimating the dimension of a model. Ann. Statist., 6 (2): 461-464, 1978.
    • (1978) Ann. Statist. , vol.6 , Issue.2 , pp. 461-464
    • Schwarz, G.1
  • 16
    • 82555193352 scopus 로고    scopus 로고
    • Rapid innovation in chip-seq peak-calling algorithms is outdistancing benchmarking efforts
    • A. M. Szalkowski and C. D. Schmid. Rapid innovation in chip-seq peak-calling algorithms is outdistancing benchmarking efforts. Briefings in Bioinformatics, 12 (6): 626-633, 2011.
    • (2011) Briefings in Bioinformatics , vol.12 , Issue.6 , pp. 626-633
    • Szalkowski, A.M.1    Schmid, C.D.2
  • 17
    • 77955368935 scopus 로고    scopus 로고
    • Evaluation of algorithm performance in ChlP-Seq peak detection
    • E. Wilibanks and M. Facciotti. Evaluation of Algorithm Performance in ChlP-Seq Peak Detection. PLoS ONE, 5 (7), 2010.
    • (2010) PLoS ONE , vol.5 , Issue.7
    • Wilibanks, E.1    Facciotti, M.2
  • 18
    • 33847378251 scopus 로고
    • Estimating the number of change-points via Schwarz' criterion
    • February
    • Y.-C. Yao. Estimating the number of change-points via Schwarz' criterion. Statistics & Probability Letters, 6 (3): 181-189, February 1988.
    • (1988) Statistics & Probability Letters , vol.6 , Issue.3 , pp. 181-189
    • Yao, Y.-C.1
  • 19
    • 34247243220 scopus 로고    scopus 로고
    • A modified bayes information criterion with applications to the analysis of comparative genomic hybridization data
    • N. R. Zhang and D. O. Siegmund. A Modified Bayes Information Criterion with Applications to the Analysis of Comparative Genomic Hybridization Data. Biometrics, 63: 22-32, 2007.
    • (2007) Biometrics , vol.63 , pp. 22-32
    • Zhang, N.R.1    Siegmund, D.O.2


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.