메뉴 건너뛰기




Volumn 144, Issue 3, 2016, Pages 351-359

Comparing mutation rates under the Luria–Delbrück protocol

Author keywords

Antibiotic resistance; Fluctuation experiment; Likelihood ratio test; Plating efficiency; Relative fitness

Indexed keywords

ALGORITHM; BIOLOGICAL MODEL; COMPUTER SIMULATION; MUTATION; MUTATION RATE; REPRODUCTIVE FITNESS;

EID: 84969134720     PISSN: 00166707     EISSN: 15736857     Source Type: Journal    
DOI: 10.1007/s10709-016-9904-3     Document Type: Article
Times cited : (23)

References (36)
  • 2
    • 84855320124 scopus 로고    scopus 로고
    • Microbial domestication signatures of Lactococcus lactis can be reproduced by experimental evolution
    • COI: 1:CAS:528:DC%2BC38XlslOrtA%3D%3D, PID: 22080491
    • Bachmann H, Starrenburg MJC, Molenaar D, Kleerebezem M, van Hylckama Vlieg JET (2012) Microbial domestication signatures of Lactococcus lactis can be reproduced by experimental evolution. Genome Res 22:115–124
    • (2012) Genome Res , vol.22 , pp. 115-124
    • Bachmann, H.1    Starrenburg, M.J.C.2    Molenaar, D.3    Kleerebezem, M.4    van Hylckama Vlieg, J.E.T.5
  • 3
    • 84971555287 scopus 로고
    • Controlling the false discovery rate: a practical and powerful approach to multiple testing
    • Benjamini Y, Hochberg Y (1995) Controlling the false discovery rate: a practical and powerful approach to multiple testing. J R Stat Soc Ser B 57:289–300
    • (1995) J R Stat Soc Ser B , vol.57 , pp. 289-300
    • Benjamini, Y.1    Hochberg, Y.2
  • 4
    • 0028238179 scopus 로고
    • Fluctuation analysis of mutations to nalidixic acid resistance in Escherichia coli
    • COI: 1:CAS:528:DyaK2cXjtF2iuro%3D, PID: 8188580
    • Boe L, Tolker-Nielsen T, Eegholm K-M, Spliid H, Vrang A (1994) Fluctuation analysis of mutations to nalidixic acid resistance in Escherichia coli. J Bacteriol 176:2781–2787
    • (1994) J Bacteriol , vol.176 , pp. 2781-2787
    • Boe, L.1    Tolker-Nielsen, T.2    Eegholm, K.-M.3    Spliid, H.4    Vrang, A.5
  • 5
    • 84868330114 scopus 로고    scopus 로고
    • Residues in the n-terminal domain of MutL required for mismatch repair in Bacillus subtilis
    • COI: 1:CAS:528:DC%2BC38XhsVWlurbF, PID: 22843852
    • Bolz NJ, Lenhart JS, Weindorf SC, Simmons LA (2012) Residues in the n-terminal domain of MutL required for mismatch repair in Bacillus subtilis. J Bacteriol 194:5361–5367
    • (2012) J Bacteriol , vol.194 , pp. 5361-5367
    • Bolz, N.J.1    Lenhart, J.S.2    Weindorf, S.C.3    Simmons, L.A.4
  • 6
    • 3042994720 scopus 로고
    • Increasing metastatic potential is associated with increasing genetic instability of clones isolated from murine neoplasms
    • COI: 1:STN:280:DyaL38%2Fot1Gltg%3D%3D, PID: 6947269
    • Cifone MA, Fidler IJ (1981) Increasing metastatic potential is associated with increasing genetic instability of clones isolated from murine neoplasms. Proc Natl Acad Sci 78:6949–6952
    • (1981) Proc Natl Acad Sci , vol.78 , pp. 6949-6952
    • Cifone, M.A.1    Fidler, I.J.2
  • 7
    • 0030597967 scopus 로고    scopus 로고
    • A modified Luria–Delbrück fluctuation assay for estimating and comparing mutation rates
    • PID: 8764946
    • Crane GJ, Thomas SM, Jones ME (1996) A modified Luria–Delbrück fluctuation assay for estimating and comparing mutation rates. Mutat Res 354:171–182
    • (1996) Mutat Res , vol.354 , pp. 171-182
    • Crane, G.J.1    Thomas, S.M.2    Jones, M.E.3
  • 8
    • 84857114878 scopus 로고    scopus 로고
    • Low-mutation-rate, reduced-genome Escherichia coli: an improved host for faithful maintenance of engineered genetic constructs
    • PID: 22264280
    • Csörgő B, Fehér T, Tímár E, Blattner FR, Pósfai G (2012) Low-mutation-rate, reduced-genome Escherichia coli: an improved host for faithful maintenance of engineered genetic constructs. Microb Cell Fact 11:11
    • (2012) Microb Cell Fact , vol.11 , pp. 11
    • Csörgő, B.1    Fehér, T.2    Tímár, E.3    Blattner, F.R.4    Pósfai, G.5
  • 9
    • 33244456358 scopus 로고    scopus 로고
    • Characterization of cycA mutants of Escherichia coli: an assay for measuring in vivo mutation rates
    • PID: 16376388
    • Fehér T, Cseh F, Umenhoffer K, Karcagi I, Pósfai G (2006) Characterization of cycA mutants of Escherichia coli: an assay for measuring in vivo mutation rates. Mutat Res 595:184–190
    • (2006) Mutat Res , vol.595 , pp. 184-190
    • Fehér, T.1    Cseh, F.2    Umenhoffer, K.3    Karcagi, I.4    Pósfai, G.5
  • 10
    • 84890843854 scopus 로고    scopus 로고
    • Founder niche constrains evolutionary adaptive radiation
    • COI: 1:CAS:528:DC%2BC2cXnsVyitw%3D%3D, PID: 24306929
    • Flohr RCE, Blom CJ, Rainey PB, Beaumont HJE (2013) Founder niche constrains evolutionary adaptive radiation. Proc Natl Acad Sci USA 110:20663–20668
    • (2013) Proc Natl Acad Sci USA , vol.110 , pp. 20663-20668
    • Flohr, R.C.E.1    Blom, C.J.2    Rainey, P.B.3    Beaumont, H.J.E.4
  • 11
    • 84879682699 scopus 로고    scopus 로고
    • Mycobacterium tuberculosis mutation rate estimates from different lineages predict substantial differences in the emergence of drug-resistant tuberculosis
    • COI: 1:CAS:528:DC%2BC3sXptVant7o%3D, PID: 23749189
    • Ford CB, Shah RR, Meada MK, Gagneux S, Murray MB, Cohen T, Johnston JC, Gardy J, Lipsitch M, Fortune SM (2013) Mycobacterium tuberculosis mutation rate estimates from different lineages predict substantial differences in the emergence of drug-resistant tuberculosis. Nat Genet 45:784–790
    • (2013) Nat Genet , vol.45 , pp. 784-790
    • Ford, C.B.1    Shah, R.R.2    Meada, M.K.3    Gagneux, S.4    Murray, M.B.5    Cohen, T.6    Johnston, J.C.7    Gardy, J.8    Lipsitch, M.9    Fortune, S.M.10
  • 12
    • 0028182772 scopus 로고
    • Luria–Delbrück fluctuation experiments: design and analysis
    • COI: 1:STN:280:DyaK2c3nsVShsw%3D%3D, PID: 8005425
    • Jones ME, Thomas SM, Rogers A (1994) Luria–Delbrück fluctuation experiments: design and analysis. Genetics 136:1209–1216
    • (1994) Genetics , vol.136 , pp. 1209-1216
    • Jones, M.E.1    Thomas, S.M.2    Rogers, A.3
  • 13
    • 0001313535 scopus 로고
    • The distribution of the numbers of mutants in bacterial populations
    • COI: 1:STN:280:DyaG3c%2FlsVSquw%3D%3D, PID: 24536673
    • Lea EA, Coulson CA (1949) The distribution of the numbers of mutants in bacterial populations. J Genet 49:264–285
    • (1949) J Genet , vol.49 , pp. 264-285
    • Lea, E.A.1    Coulson, C.A.2
  • 15
    • 0001641514 scopus 로고
    • Mutations of bacteria from virus sensitivity to virus resistance
    • COI: 1:CAS:528:DyaH2cXosVGn, PID: 17247100
    • Luria SE, Delbrück M (1943) Mutations of bacteria from virus sensitivity to virus resistance. Genetics 28:491–511
    • (1943) Genetics , vol.28 , pp. 491-511
    • Luria, S.E.1    Delbrück, M.2
  • 16
    • 0001633538 scopus 로고
    • Analysis of the Luria and Delbrück distribution using discrete convolution powers
    • Ma WT, Sandri G vH, Sarkar S (1992) Analysis of the Luria and Delbrück distribution using discrete convolution powers. J Appl Prob 29:255–267
    • (1992) J Appl Prob , vol.29 , pp. 255-267
    • Ma, W.T.1    Sandri, G.H.2    Sarkar, S.3
  • 18
    • 84860231773 scopus 로고    scopus 로고
    • Functional analysis of the interaction between the mismatch repair protein MutS and the replication processivity factor β clamp in Pseudomonas aeruginosa
    • COI: 1:CAS:528:DC%2BC38XjtVOqsro%3D, PID: 22365420
    • Monti MR, Miguel V, Borgogno MV, Argaraña CE (2012) Functional analysis of the interaction between the mismatch repair protein MutS and the replication processivity factor β clamp in Pseudomonas aeruginosa. DNA Repair 11:463–469
    • (2012) DNA Repair , vol.11 , pp. 463-469
    • Monti, M.R.1    Miguel, V.2    Borgogno, M.V.3    Argaraña, C.E.4
  • 21
    • 0034006621 scopus 로고    scopus 로고
    • Determining mutation rates in bacterial populations
    • COI: 1:CAS:528:DC%2BD3cXhtFCht7o%3D, PID: 10610800
    • Rosche WA, Foster PL (2000) Determining mutation rates in bacterial populations. Methods 20:4–17
    • (2000) Methods , vol.20 , pp. 4-17
    • Rosche, W.A.1    Foster, P.L.2
  • 22
    • 84871776715 scopus 로고    scopus 로고
    • A mammalian-like DNA damage response of fission yeast to nucleoside analogs
    • COI: 1:CAS:528:DC%2BC3sXjt1eqsLo%3D, PID: 23150603
    • Sabatinos SA, Mastro TL, Green MD, Forsburg SL (2013) A mammalian-like DNA damage response of fission yeast to nucleoside analogs. Genetics 193:143–157
    • (2013) Genetics , vol.193 , pp. 143-157
    • Sabatinos, S.A.1    Mastro, T.L.2    Green, M.D.3    Forsburg, S.L.4
  • 24
    • 0026470403 scopus 로고
    • On fluctuation analysis: a new, simple and efficient method for computing the expected number of mutants
    • COI: 1:STN:280:DyaK38zisVKhtA%3D%3D, PID: 1624139
    • Sarkar S, Ma WT, Sandri G vH (1992) On fluctuation analysis: a new, simple and efficient method for computing the expected number of mutants. Genetica 85:173–179
    • (1992) Genetica , vol.85 , pp. 173-179
    • Sarkar, S.1    Ma, W.T.2    Sandri, G.H.3
  • 25
    • 0035590266 scopus 로고    scopus 로고
    • On judging the significance of differences by examining overlap between confidence intervals
    • Schenker N, Gentleman JF (2001) On judging the significance of differences by examining overlap between confidence intervals. Am Stat 55:182–186
    • (2001) Am Stat , vol.55 , pp. 182-186
    • Schenker, N.1    Gentleman, J.F.2
  • 26
    • 84884971078 scopus 로고    scopus 로고
    • Oxidative damage and mutagenesis in Saccharomyces cerevisiae: genetic studies of pathways affecting replication fidelity of 8-oxoguanine
    • PID: 23893481
    • Shockley AH, Doo DW, Rodriguez GP, Crouse GF (2013) Oxidative damage and mutagenesis in Saccharomyces cerevisiae: genetic studies of pathways affecting replication fidelity of 8-oxoguanine. Genetics 195:359–367
    • (2013) Genetics , vol.195 , pp. 359-367
    • Shockley, A.H.1    Doo, D.W.2    Rodriguez, G.P.3    Crouse, G.F.4
  • 27
    • 0025988968 scopus 로고
    • Fluctuation analysis: the effect of plating efficiency
    • COI: 1:STN:280:DyaK3MzktVWntA%3D%3D, PID: 1874441
    • Stewart FM (1991) Fluctuation analysis: the effect of plating efficiency. Genetica 84:51–55
    • (1991) Genetica , vol.84 , pp. 51-55
    • Stewart, F.M.1
  • 29
    • 0037388572 scopus 로고    scopus 로고
    • Drug-susceptible Mycobacterium tuberculosis Beijing genotype does not develop mutation-conferred resistance to rifampin at an elevated rate
    • COI: 1:CAS:528:DC%2BD3sXjsVOnurk%3D, PID: 12682139
    • Werngren J, Hoffner SE (2003) Drug-susceptible Mycobacterium tuberculosis Beijing genotype does not develop mutation-conferred resistance to rifampin at an elevated rate. J Clin Microbiol 41:1520–1524
    • (2003) J Clin Microbiol , vol.41 , pp. 1520-1524
    • Werngren, J.1    Hoffner, S.E.2
  • 31
    • 0032760481 scopus 로고    scopus 로고
    • Progress of a half century in the study of the Luria–Delbrück distribution
    • COI: 1:STN:280:DC%2BD3c%2FotlKmsw%3D%3D, PID: 10616278
    • Zheng Q (1999) Progress of a half century in the study of the Luria–Delbrück distribution. Math Biosci 162:1–32
    • (1999) Math Biosci , vol.162 , pp. 1-32
    • Zheng, Q.1
  • 32
    • 23044450296 scopus 로고    scopus 로고
    • New algorithms for Luria–Delbrück fluctuation analysis
    • PID: 15950991
    • Zheng Q (2005) New algorithms for Luria–Delbrück fluctuation analysis. Math Biosci 196:198–214
    • (2005) Math Biosci , vol.196 , pp. 198-214
    • Zheng, Q.1
  • 33
    • 56049108085 scopus 로고    scopus 로고
    • A note on plating efficiency in fluctuation experiments
    • PID: 18822300
    • Zheng Q (2008) A note on plating efficiency in fluctuation experiments. Math Biosci 216:150–153
    • (2008) Math Biosci , vol.216 , pp. 150-153
    • Zheng, Q.1
  • 34
    • 84928719732 scopus 로고    scopus 로고
    • Methods for comparing mutation rates using fluctuation assay data
    • COI: 1:CAS:528:DC%2BC2MXmslejtLs%3D
    • Zheng Q (2015a) Methods for comparing mutation rates using fluctuation assay data. Mutat Res Fundam Mol Mech Mutagen 777:20–22
    • (2015) Mutat Res Fundam Mol Mech Mutagen , vol.777 , pp. 20-22
    • Zheng, Q.1
  • 35
    • 84941277851 scopus 로고    scopus 로고
    • A new practical guide to the Luria–Delbrück protocol
    • COI: 1:CAS:528:DC%2BC2MXhsV2ntLfK
    • Zheng Q (2015b) A new practical guide to the Luria–Delbrück protocol. Mutat Res Fundam Mol Mech Mutagen 781:7–13
    • (2015) Mutat Res Fundam Mol Mech Mutagen , vol.781 , pp. 7-13
    • Zheng, Q.1


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.