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Volumn , Issue , 2016, Pages 317-331

From databases to big data

Author keywords

Big data; Data exchange; Data warehousing; Databases; Metabolic phenotyping; Metabolomics

Indexed keywords


EID: 84967214575     PISSN: None     EISSN: None     Source Type: Book    
DOI: 10.1016/B978-0-12-800344-2.00011-2     Document Type: Chapter
Times cited : (10)

References (48)
  • 1
    • 84967124593 scopus 로고    scopus 로고
    • Technology Review
    • Illumina says 228,000 human genomes will be sequenced this year. Available from, [September 4, 2015].
    • Technology Review. Illumina says 228,000 human genomes will be sequenced this year. Available from: <> 2014 [September 4, 2015]. http://www.technologyreview.com/news/531091/emtech-illumina-says-228000-human-genomes-will-be-sequenced-this-year/.
    • (2014)
  • 2
    • 84865610293 scopus 로고    scopus 로고
    • 3D data management: controlling data volume, velocity and variety
    • Laney D 3D data management: controlling data volume, velocity and variety. META Group Research Note 2001, 6.
    • (2001) META Group Research Note , pp. 6
    • Laney, D.1
  • 3
    • 84946418150 scopus 로고    scopus 로고
    • Why the 3V's are not sufficient to describe big data
    • [September 4, 2015].
    • Mark van Rijmenam. Why the 3V's are not sufficient to describe big data. Available from: <> 2015 [September 4, 2015]. https://datafloq.com/read/3vs-sufficient-describe-big-data/166.
    • (2015)
    • van Rijmenam, M.1
  • 4
    • 85066392504 scopus 로고    scopus 로고
    • Open access, open data, open science...what does "openness" mean in the first place?
    • Levin N. Open access, open data, open science...what does "openness" mean in the first place? Available from: <> 2015. http://somatosphere.net/2015/02/open-science.html.
    • (2015)
    • Levin, N.1
  • 5
    • 85066384809 scopus 로고    scopus 로고
    • European Molecular Biology Laboratory. The European Bioinformatics Institute. Available from: [September 4, 2015].
    • European Molecular Biology Laboratory. The European Bioinformatics Institute. Available from: <> 2015 [September 4, 2015]. http://www.ebi.ac.uk/.
    • (2015)
  • 6
    • 85066393855 scopus 로고    scopus 로고
    • National Institutes of Health. National Center for Biotechnology Information. Available from: [September 4, 2015].
    • National Institutes of Health. National Center for Biotechnology Information. Available from: <> 2015 [September 4, 2015]. http://www.ncbi.nlm.nih.gov/home/about/.
    • (2015)
  • 7
    • 70349872738 scopus 로고    scopus 로고
    • Summary of principles agreed at the first international strategy meeting on human genome sequencing, Bermuda
    • HUGO, Available from, [August 25, 2015].
    • HUGO. Summary of principles agreed at the first international strategy meeting on human genome sequencing, Bermuda. Available from: <>1996 [August 25, 2015]. http://www.ornl.gov/sci/techresources/Human_Genome/research/bermuda.shtml.
    • (1996)
  • 8
    • 41849144111 scopus 로고    scopus 로고
    • The UK Biobank sample handling and storage protocol for the collection, processing and archiving of human blood and urine
    • Elliott P, Peakman TC The UK Biobank sample handling and storage protocol for the collection, processing and archiving of human blood and urine. Int. J Epidemiol. 2008, 37(2):234-244.
    • (2008) Int. J Epidemiol. , vol.37 , Issue.2 , pp. 234-244
    • Elliott, P.1    Peakman, T.C.2
  • 9
    • 84878253707 scopus 로고    scopus 로고
    • Imaging in population science: cardiovascular magnetic resonance in 100,000 participants of UK Biobank-rationale, challenges and approaches
    • Petersen SE, Matthews PM, Bamberg F, Bluemke DA, Francis JM, Friedrich MG, et al. Imaging in population science: cardiovascular magnetic resonance in 100,000 participants of UK Biobank-rationale, challenges and approaches. J. Cardiovasc. Magn. Reson. 2013, 15(1):46.
    • (2013) J. Cardiovasc. Magn. Reson. , vol.15 , Issue.1 , pp. 46
    • Petersen, S.E.1    Matthews, P.M.2    Bamberg, F.3    Bluemke, D.A.4    Francis, J.M.5    Friedrich, M.G.6
  • 10
    • 79959898098 scopus 로고    scopus 로고
    • Extending biochemical databases by metabolomic surveys
    • Fiehn O, Barupal DK, Kind T Extending biochemical databases by metabolomic surveys. J. Biol. Chem. 2011, 286(27):23637-23643.
    • (2011) J. Biol. Chem. , vol.286 , Issue.27 , pp. 23637-23643
    • Fiehn, O.1    Barupal, D.K.2    Kind, T.3
  • 12
    • 0033982936 scopus 로고    scopus 로고
    • KEGG: kyoto encyclopedia of genes and genomes
    • Kanehisa M, Goto S KEGG: kyoto encyclopedia of genes and genomes. Nucleic Acids Res. 2000, 28(1):27-30.
    • (2000) Nucleic Acids Res. , vol.28 , Issue.1 , pp. 27-30
    • Kanehisa, M.1    Goto, S.2
  • 15
    • 41149116500 scopus 로고    scopus 로고
    • BioMagResBank (BMRB) as a partner in the Worldwide Protein Data Bank (wwPDB): new policies affecting biomolecular NMR depositions
    • Markley JL, Ulrich EL, Berman HM, Henrick K, Nakamura H, Akutsu H BioMagResBank (BMRB) as a partner in the Worldwide Protein Data Bank (wwPDB): new policies affecting biomolecular NMR depositions. J. Biomol. NMR 2008, 40(3):153-155.
    • (2008) J. Biomol. NMR , vol.40 , Issue.3 , pp. 153-155
    • Markley, J.L.1    Ulrich, E.L.2    Berman, H.M.3    Henrick, K.4    Nakamura, H.5    Akutsu, H.6
  • 17
    • 78449296488 scopus 로고    scopus 로고
    • ChemSpider: an online chemical information resource
    • Pence HE, Williams A ChemSpider: an online chemical information resource. J. Chem. Educ. 2010, 87(11):1123-1124.
    • (2010) J. Chem. Educ. , vol.87 , Issue.11 , pp. 1123-1124
    • Pence, H.E.1    Williams, A.2
  • 19
    • 77954439868 scopus 로고    scopus 로고
    • MassBank: a public repository for sharing mass spectral data for life sciences
    • Horai H, Arita M, Kanaya S, Nihei Y, Ikeda T, Suwa K, et al. MassBank: a public repository for sharing mass spectral data for life sciences. J. Mass Spectrom. 2010, 45(7):703-714.
    • (2010) J. Mass Spectrom. , vol.45 , Issue.7 , pp. 703-714
    • Horai, H.1    Arita, M.2    Kanaya, S.3    Nihei, Y.4    Ikeda, T.5    Suwa, K.6
  • 22
    • 79952254324 scopus 로고    scopus 로고
    • Table of pharmacogenomic biomarkers in drug labels
    • U.S. Food and Drug Administration, Available from,
    • U.S. Food and Drug Administration. Table of pharmacogenomic biomarkers in drug labels. Available from: <> 2013. http://www.fda.gov/drugs/scienceresearch/researchareas/pharmacogenetics/ucm083378.htm.
    • (2013)
  • 23
    • 67849104638 scopus 로고    scopus 로고
    • PubChem: a public information system for analyzing bioactivities of small molecules
    • Wang Y, Xiao J, Suzek TO, Zhang J, Wang J, Bryant SH PubChem: a public information system for analyzing bioactivities of small molecules. Nucleic Acids Res. 2009, 37(Suppl. 2):W623-W633.
    • (2009) Nucleic Acids Res. , vol.37 , pp. W623-W633
    • Wang, Y.1    Xiao, J.2    Suzek, T.O.3    Zhang, J.4    Wang, J.5    Bryant, S.H.6
  • 24
    • 84891774001 scopus 로고    scopus 로고
    • The MetaCyc database of metabolic pathways and enzymes and the BioCyc collection of Pathway/Genome Databases
    • Caspi R, Altman T, Billington R, Dreher K, Foerster H, Fulcher CA, et al. The MetaCyc database of metabolic pathways and enzymes and the BioCyc collection of Pathway/Genome Databases. Nucleic Acids Res 2014, 42(D1):D459-D471.
    • (2014) Nucleic Acids Res , vol.42 , Issue.D1 , pp. D459-D471
    • Caspi, R.1    Altman, T.2    Billington, R.3    Dreher, K.4    Foerster, H.5    Fulcher, C.A.6
  • 28
    • 15944398802 scopus 로고    scopus 로고
    • Data warehouse
    • Wikipedia, Available from, [June 20, 2015].
    • Wikipedia. Data warehouse. Available from: <> 2003 [June 20, 2015]. http://en.wikipedia.org/wiki/Data_warehouse.
    • (2003)
  • 29
    • 84944116967 scopus 로고    scopus 로고
    • Data mining
    • Wikipedia, Available from, [September 4, 2015].
    • Wikipedia. Data mining. Available from: <> 2015 [September 4, 2015]. https://en.wikipedia.org/wiki/Data_mining.
    • (2015)
  • 30
    • 84876560030 scopus 로고    scopus 로고
    • MetaboLights-an open-access general-purpose repository for metabolomics studies and associated meta-data
    • gks1004
    • Haug K, Salek RM, Conesa P, Hastings J, de Matos P, Rijnbeek M, et al. MetaboLights-an open-access general-purpose repository for metabolomics studies and associated meta-data. Nucleic Acids Res. 2012, gks1004.
    • (2012) Nucleic Acids Res.
    • Haug, K.1    Salek, R.M.2    Conesa, P.3    Hastings, J.4    de Matos, P.5    Rijnbeek, M.6
  • 32
    • 85066355330 scopus 로고    scopus 로고
    • Metabolomics workbench
    • NIH Common Fund's Data Repository and Coordinating Center, Available from, [cited September 4, 2015].
    • NIH Common Fund's Data Repository and Coordinating Center. Metabolomics workbench. Available from: <> 2015 [cited September 4, 2015]. http://www.metabolomicsworkbench.org/.
    • (2015)
  • 33
    • 84967045378 scopus 로고    scopus 로고
    • NIH announces new program in metabolomics
    • National Institute of Health, Available from, [August 20, 2013].
    • National Institute of Health. NIH announces new program in metabolomics. Available from: <> 2012 [August 20, 2013]. http://www.nih.gov/news/health/sep2012/od-19.htm.
    • (2012)
  • 34
    • 85066371165 scopus 로고    scopus 로고
    • MetabolomeXchange
    • COSMOS, Available from, [September 4, 2015].
    • COSMOS. MetabolomeXchange. Available from: <> 2015 [September 4, 2015]. http://metabolomexchange.org/site/.
    • (2015)
  • 35
    • 85006189429 scopus 로고    scopus 로고
    • Dissemination of metabolomics results: role of MetaboLights and COSMOS
    • Salek RM, Haug K, Steinbeck C Dissemination of metabolomics results: role of MetaboLights and COSMOS. GigaScience 2013, 2(8.10):1186.
    • (2013) GigaScience , vol.2 , Issue.8-10 , pp. 1186
    • Salek, R.M.1    Haug, K.2    Steinbeck, C.3
  • 36
    • 85066391023 scopus 로고    scopus 로고
    • ProteomeXchange
    • EMBL-EBI, Available from, [September 4, 2015].
    • EMBL-EBI. ProteomeXchange. Available from: <> 2015 [September 4, 2015]. http://metabolomexchange.org/.
    • (2015)
  • 37
    • 84986584228 scopus 로고    scopus 로고
    • Valuing data in postgenomic biology: how data donation and curation practices challenge the scientific publication system
    • Duke University Press, Durham, H. Stevens, S. Richardson (Eds.)
    • Ankeny RA, Leonelli S Valuing data in postgenomic biology: how data donation and curation practices challenge the scientific publication system. Postgenomics 2015, 126-149. Duke University Press, Durham. H. Stevens, S. Richardson (Eds.).
    • (2015) Postgenomics , pp. 126-149
    • Ankeny, R.A.1    Leonelli, S.2
  • 38
    • 84872161506 scopus 로고    scopus 로고
    • Altmetrics: value all research products
    • 159-9
    • Piwowar H Altmetrics: value all research products. Nature 2013, 493(7431). 159-9.
    • (2013) Nature , vol.493 , Issue.7431
    • Piwowar, H.1
  • 39
    • 84944278465 scopus 로고    scopus 로고
    • Coordination of Standards in MetabOlomicS (COSMOS): facilitating integrated metabolomics data access
    • Salek R, Neumann S, Schober D, Hummel J, Billiau K, Kopka J, et al. Coordination of Standards in MetabOlomicS (COSMOS): facilitating integrated metabolomics data access. Metabolomics 2015, 1-11.
    • (2015) Metabolomics , pp. 1-11
    • Salek, R.1    Neumann, S.2    Schober, D.3    Hummel, J.4    Billiau, K.5    Kopka, J.6
  • 41
    • 33745370063 scopus 로고    scopus 로고
    • Metabolomics standards workshop and the development of international standards for reporting metabolomics experimental results
    • Castle AL, Fiehn O, Kaddurah-Daouk R, Lindon JC Metabolomics standards workshop and the development of international standards for reporting metabolomics experimental results. Brief. Bioinform. 2006, 7(2):159-165.
    • (2006) Brief. Bioinform. , vol.7 , Issue.2 , pp. 159-165
    • Castle, A.L.1    Fiehn, O.2    Kaddurah-Daouk, R.3    Lindon, J.C.4
  • 42
    • 0037293360 scopus 로고    scopus 로고
    • The HUPO proteomics standards initiative meeting: towards common standards for exchanging proteomics data
    • Orchard S, Kersey P, Hermjakob H, Apweiler R The HUPO proteomics standards initiative meeting: towards common standards for exchanging proteomics data. Comp. Funct. Genomics. 2003, 4(1):16-19.
    • (2003) Comp. Funct. Genomics. , vol.4 , Issue.1 , pp. 16-19
    • Orchard, S.1    Kersey, P.2    Hermjakob, H.3    Apweiler, R.4
  • 43
    • 84931565507 scopus 로고    scopus 로고
    • Embedding standards in metabolomics: the Metabolomics Society data standards task group
    • Salek RM, Arita M, Dayalan S, Ebbels T, Jones AR, Neumann S, et al. Embedding standards in metabolomics: the Metabolomics Society data standards task group. Metabolomics 2015, 11(4):782-783.
    • (2015) Metabolomics , vol.11 , Issue.4 , pp. 782-783
    • Salek, R.M.1    Arita, M.2    Dayalan, S.3    Ebbels, T.4    Jones, A.R.5    Neumann, S.6
  • 45
    • 67849106535 scopus 로고    scopus 로고
    • MetaboAnalyst: a web server for metabolomic data analysis and interpretation
    • Xia J, Psychogios N, Young N, Wishart DS MetaboAnalyst: a web server for metabolomic data analysis and interpretation. Nucleic Acids Res. 2009, 37(Suppl. 2):W652-W660.
    • (2009) Nucleic Acids Res. , vol.37 , pp. W652-W660
    • Xia, J.1    Psychogios, N.2    Young, N.3    Wishart, D.S.4
  • 46
    • 33644867564 scopus 로고    scopus 로고
    • MZmine: toolbox for processing and visualization of mass spectrometry based molecular profile data
    • Katajamaa M, Miettinen J, Orešič M MZmine: toolbox for processing and visualization of mass spectrometry based molecular profile data. Bioinformatics 2006, 22(5):634-636.
    • (2006) Bioinformatics , vol.22 , Issue.5 , pp. 634-636
    • Katajamaa, M.1    Miettinen, J.2    Orešič, M.3
  • 47
    • 84861915827 scopus 로고    scopus 로고
    • XCMS Online: a web-based platform to process untargeted metabolomic data
    • Tautenhahn R, Patti GJ, Rinehart D, Siuzdak G XCMS Online: a web-based platform to process untargeted metabolomic data. Anal. Chem. 2012, 84(11):5035-5039.
    • (2012) Anal. Chem. , vol.84 , Issue.11 , pp. 5035-5039
    • Tautenhahn, R.1    Patti, G.J.2    Rinehart, D.3    Siuzdak, G.4
  • 48
    • 7644232196 scopus 로고    scopus 로고
    • The social and ethical issues of post-genomic human biobanks
    • Cambon-Thomsen A The social and ethical issues of post-genomic human biobanks. Nat. Rev. Genet. 2004, 5(11):866-873.
    • (2004) Nat. Rev. Genet. , vol.5 , Issue.11 , pp. 866-873
    • Cambon-Thomsen, A.1


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.