메뉴 건너뛰기




Volumn 2015, Issue 1, 2015, Pages 289-303

Viral meningitis epidemics and a single, recent, recombinant and anthroponotic origin of swine vesicular disease virus

Author keywords

Emerging diseases; Enterovirus B; Picornaviridae; RNA viruses; SVDV; Viral meningitis

Indexed keywords

ARTICLE; CHINA; CONTROLLED STUDY; COXSACKIEVIRUS A9; COXSACKIEVIRUS B5; ENTEROVIRUS; ENTEROVIRUS B; EPIDEMIC; GEOGRAPHIC ORIGIN; HIGH THROUGHPUT SEQUENCING; MIXED INFECTION; MONOPHYLY; NONHUMAN; PHYLOGENY; PRIORITY JOURNAL; SEQUENCE ANALYSIS; SWINE VESICULAR DISEASE VIRUS; VIRUS GENOME; VIRUS ISOLATION; VIRUS MENINGITIS; VIRUS RECOMBINANT; VIRUS RECOMBINATION; VIRUS TRANSMISSION;

EID: 84966325500     PISSN: None     EISSN: 20506201     Source Type: Journal    
DOI: 10.1093/emph/eov026     Document Type: Article
Times cited : (12)

References (64)
  • 1
    • 0014425699 scopus 로고
    • A foot and mouth disease syndrome in pigs caused by an enterovirus
    • Nardelli L, Lodetti E, Gualandi GL et al. A foot and mouth disease syndrome in pigs caused by an enterovirus. Nature 1968;219:1275-6.
    • (1968) Nature , vol.219 , pp. 1275-1276
    • Nardelli, L.1    Lodetti, E.2    Gualandi, G.L.3
  • 2
    • 0015525888 scopus 로고
    • Differentiation of a vesicular disease of pigs in Hong Kong from foot-andmouth disease
    • Mowat GN, Darbyshire JH, Huntley JF. Differentiation of a vesicular disease of pigs in Hong Kong from foot-andmouth disease. Vet Rec 1972;90:618-21.
    • (1972) Vet Rec , vol.90 , pp. 618-621
    • Mowat, G.N.1    Darbyshire, J.H.2    Huntley, J.F.3
  • 3
    • 0015114139 scopus 로고
    • Expression of animal virus genomes
    • Baltimore D. Expression of animal virus genomes. Bacteriol Rev 1971;35:235-41.
    • (1971) Bacteriol Rev , vol.35 , pp. 235-241
    • Baltimore, D.1
  • 4
    • 0034332010 scopus 로고    scopus 로고
    • Swine vesicular disease: An overview
    • Lin F, Kitching RP. Swine vesicular disease: An overview. Vet J 2000;160:192-201.
    • (2000) Vet J , vol.160 , pp. 192-201
    • Lin, F.1    Kitching, R.P.2
  • 5
    • 0015856727 scopus 로고
    • Antigenic differences between isolates of swine vesicular disease virus and their relationship to Coxsackie B5 virus
    • Brown F, Talbot P, Burrows R. Antigenic differences between isolates of swine vesicular disease virus and their relationship to Coxsackie B5 virus. Nature 1973;245:315-6.
    • (1973) Nature , vol.245 , pp. 315-316
    • Brown, F.1    Talbot, P.2    Burrows, R.3
  • 6
    • 0015804104 scopus 로고
    • Serological relationship of swine vesicular disease virus and Coxsackie B5 virus
    • Graves JH. Serological relationship of swine vesicular disease virus and Coxsackie B5 virus. Nature 1973;245:314-5.
    • (1973) Nature , vol.245 , pp. 314-315
    • Graves, J.H.1
  • 7
    • 0027238244 scopus 로고
    • Complete nucleotide sequence of a coxsackie B5 virus and its relationship to swine vesicular disease virus
    • Zhang G, Wilsden G, Knowles NJ, McCauley JW. Complete nucleotide sequence of a coxsackie B5 virus and its relationship to swine vesicular disease virus. J Gen Virol 1993;74: 845-53.
    • (1993) J Gen Virol , vol.74 , pp. 845-853
    • Zhang, G.1    Wilsden, G.2    Knowles, N.J.3    McCauley, J.W.4
  • 9
    • 18744408450 scopus 로고    scopus 로고
    • Role of recombination in evolution of enteroviruses
    • Lukashev AN. Role of recombination in evolution of enteroviruses. Rev Med Virol 2005;15:157-67.
    • (2005) Rev Med Virol , vol.15 , pp. 157-167
    • Lukashev, A.N.1
  • 10
    • 33750742813 scopus 로고    scopus 로고
    • Recombination and selection in the evolution of picornaviruses and other mammalian positivestranded RNA viruses
    • Simmonds P. Recombination and selection in the evolution of picornaviruses and other mammalian positivestranded RNA viruses. J Virol 2006;80:11124-40.
    • (2006) J Virol , vol.80 , pp. 11124-11140
    • Simmonds, P.1
  • 11
    • 1542287492 scopus 로고    scopus 로고
    • RNA recombination plays a major role in genomic change during circulation of coxsackie B viruses
    • Oberste MS, Penaranda S, Pallansch MA. RNA recombination plays a major role in genomic change during circulation of coxsackie B viruses. J Virol 2004;78:2948-55.
    • (2004) J Virol , vol.78 , pp. 2948-2955
    • Oberste, M.S.1    Penaranda, S.2    Pallansch, M.A.3
  • 12
    • 77956624160 scopus 로고    scopus 로고
    • Recombination among picornaviruses
    • Lukashev AN. Recombination among picornaviruses. Rev Med Virol 2010;20:327-37.
    • (2010) Rev Med Virol , vol.20 , pp. 327-337
    • Lukashev, A.N.1
  • 13
    • 84862544949 scopus 로고    scopus 로고
    • Probable transmission of coxsackie B3 virus from human to chimpanzee, Denmark
    • Nielsen SCA, Mourier T, Baandrup U et al. Probable transmission of coxsackie B3 virus from human to chimpanzee, Denmark. Emerg Infect Dis 2012;18:1163-5.
    • (2012) Emerg Infect Dis , vol.18 , pp. 1163-1165
    • Nielsen, S.C.A.1    Mourier, T.2    Baandrup, U.3
  • 14
    • 84863101693 scopus 로고    scopus 로고
    • AdapterRemoval: easy cleaning of next-generation sequencing reads.
    • Lindgreen S. AdapterRemoval: easy cleaning of next-generation sequencing reads. BMC Res Notes 2012; 5:337
    • (2012) BMC Res Notes , vol.5 , pp. 337
    • Lindgreen, S.1
  • 16
    • 79952422304 scopus 로고    scopus 로고
    • Quality control and preprocessing of metagenomic datasets.
    • SchmiederR, Edwards R.Quality control and preprocessing of metagenomic datasets. Bioinformatics 2011;27:863-4.
    • (2011) Bioinformatics , vol.27 , pp. 863-864
    • Schmieder, R.1    Edwards, R.2
  • 17
    • 84901207699 scopus 로고    scopus 로고
    • Nearcomplete genome sequencing of swine vesicular disease virus using the Roche GS Flex sequencing Platform
    • Nielsen SCA, Bruhn CAW, Samaniego JA et al. Nearcomplete genome sequencing of swine vesicular disease virus using the Roche GS Flex sequencing Platform. Plos One 2014; doi: 10.1371/journal.pone.0097180.
    • (2014) Plos One
    • Nielsen, S.C.A.1    Bruhn, C.A.W.2    Samaniego, J.A.3
  • 18
    • 84863507534 scopus 로고    scopus 로고
    • Geneious Basic: an integrated and extendable desktop software platform for the organization and analysis of sequence data
    • Kearse M, Moir R, Wilson A et al. Geneious Basic: an integrated and extendable desktop software platform for the organization and analysis of sequence data. Bioinformatics 2012;28:1647-9.
    • (2012) Bioinformatics , vol.28 , pp. 1647-1649
    • Kearse, M.1    Moir, R.2    Wilson, A.3
  • 19
    • 85051685774 scopus 로고    scopus 로고
    • Madison, WI. Version 12.0
    • SeqMan NGen®. DNAStar. 2013. Madison, WI. Version 12.0. http://www.dnastar.com.
    • (2013) DNAStar
  • 20
    • 68049142320 scopus 로고    scopus 로고
    • Multiple alignment of DNA sequences with MAFFT
    • Katoh K, Asimenos G, Toh H. Multiple alignment of DNA sequences with MAFFT. Bioinform DNA Seq Anal 2009;537:39-64.
    • (2009) Bioinform DNA Seq Anal , vol.537 , pp. 39-64
    • Katoh, K.1    Asimenos, G.2    Toh, H.3
  • 21
    • 0037100671 scopus 로고    scopus 로고
    • MAFFT: a novel method for rapid multiple sequence alignment based on fast Fourier transform
    • Katoh K, Misawa K, Kuma K, Miyata T. MAFFT: a novel method for rapid multiple sequence alignment based on fast Fourier transform. Nucleic Acids Res 2002;30:3059-66.
    • (2002) Nucleic Acids Res , vol.30 , pp. 3059-3066
    • Katoh, K.1    Misawa, K.2    Kuma, K.3    Miyata, T.4
  • 23
    • 33748770095 scopus 로고    scopus 로고
    • Automated phylogenetic detection of recombination using a genetic algorithm
    • Kosakovsky Pond SL, Posada D, Gravenor MB et al. Automated phylogenetic detection of recombination using a genetic algorithm. Mol Biol Evol 2006;23: 1891-901.
    • (2006) Mol Biol Evol , vol.23 , pp. 1891-1901
    • Kosakovsky Pond, S.L.1    Posada, D.2    Gravenor, M.B.3
  • 24
    • 77957233168 scopus 로고    scopus 로고
    • Datamonkey 2010: a suite of phylogenetic analysis tools for evolutionary biology
    • Delport W, Poon AF, Frost SD, Kosakovsky Pond SL. Datamonkey 2010: a suite of phylogenetic analysis tools for evolutionary biology. Bioinformatics 2010;26:2455-7.
    • (2010) Bioinformatics , vol.26 , pp. 2455-2457
    • Delport, W.1    Poon, A.F.2    Frost, S.D.3    Kosakovsky Pond, S.L.4
  • 25
    • 0024307824 scopus 로고
    • Evaluation of the maximum-likelihood estimate of the evolutionary tree topologies from dna-sequence data, and the branching order in hominoidea
    • Kishino H, Hasegawa M. Evaluation of the maximum-likelihood estimate of the evolutionary tree topologies from dna-sequence data, and the branching order in hominoidea. J Mol Evol 1989;29:170-9.
    • (1989) J Mol Evol , vol.29 , pp. 170-179
    • Kishino, H.1    Hasegawa, M.2
  • 27
    • 0030801002 scopus 로고    scopus 로고
    • Gapped BLAST and PSI-BLAST: a new generation of protein database search programs
    • Altschul SF, Madden TL, Schaffer AA et al. Gapped BLAST and PSI-BLAST: a new generation of protein database search programs. Nucleic Acids Res 1997; 25:3389- 402.
    • (1997) Nucleic Acids Res , vol.25 , pp. 3389-3402
    • Altschul, S.F.1    Madden, T.L.2    Schaffer, A.A.3
  • 28
    • 84864453108 scopus 로고    scopus 로고
    • jModelTest 2: more models, new heuristics and parallel computing
    • Darriba D, Taboada G, Doallo R, Posada D. jModelTest 2: more models, new heuristics and parallel computing. Nat Methods 2012;9:772.
    • (2012) Nat Methods , vol.9 , pp. 772
    • Darriba, D.1    Taboada, G.2    Doallo, R.3    Posada, D.4
  • 29
    • 45849154165 scopus 로고    scopus 로고
    • jModelTest: phylogenetic model averaging
    • Posada D. jModelTest: phylogenetic model averaging. Mol Biol Evol 2008;25:1253-6.
    • (2008) Mol Biol Evol , vol.25 , pp. 1253-1256
    • Posada, D.1
  • 30
    • 0016355478 scopus 로고
    • A new look at the statistical model identification
    • Akaike H. A new look at the statistical model identification. Automat Control IEEE Trans 1974;19:716-23.
    • (1974) Automat Control IEEE Trans , vol.19 , pp. 716-723
    • Akaike, H.1
  • 31
    • 70349119250 scopus 로고
    • Regression and time-series model selection in small samples
    • Hurvich CM, Tsai CL. Regression and time-series model selection in small samples. Biometrika 1989;76:297-307.
    • (1989) Biometrika , vol.76 , pp. 297-307
    • Hurvich, C.M.1    Tsai, C.L.2
  • 32
    • 0000120766 scopus 로고
    • Estimating the Dimension of a Model
    • Schwarz G. Estimating the Dimension of a Model. Ann Stat 1978;6:461-4.
    • (1978) Ann Stat , vol.6 , pp. 461-464
    • Schwarz, G.1
  • 33
    • 0242487488 scopus 로고    scopus 로고
    • Performance-based selection of likelihood models for phylogeny estimation
    • Minin V, Abdo Z, Joyce P, Sullivan J. Performance-based selection of likelihood models for phylogeny estimation. Syst Biol 2003;52:674-83.
    • (2003) Syst Biol , vol.52 , pp. 674-683
    • Minin, V.1    Abdo, Z.2    Joyce, P.3    Sullivan, J.4
  • 35
    • 80052014395 scopus 로고    scopus 로고
    • Survey of branch support methods demonstrates accuracy, power, and robustness of fast likelihood-based approximation schemes
    • Anisimova M, Gil M, Dufayard JF et al. Survey of branch support methods demonstrates accuracy, power, and robustness of fast likelihood-based approximation schemes. Syst Biol 2011;60:685-99.
    • (2011) Syst Biol , vol.60 , pp. 685-699
    • Anisimova, M.1    Gil, M.2    Dufayard, J.F.3
  • 36
    • 0242578620 scopus 로고    scopus 로고
    • A simple, fast, and accurate algorithm to estimate large phylogenies by maximum likelihood
    • Guindon S, Gascuel O. A simple, fast, and accurate algorithm to estimate large phylogenies by maximum likelihood. Syst Biol 2003;52:696-704.
    • (2003) Syst Biol , vol.52 , pp. 696-704
    • Guindon, S.1    Gascuel, O.2
  • 40
    • 0036021407 scopus 로고    scopus 로고
    • Estimating mutation parameters, population history and genealogy simultaneously from temporally spaced sequence data
    • Drummond AJ, Nicholls GK, Rodrigo AG, Solomon W. Estimating mutation parameters, population history and genealogy simultaneously from temporally spaced sequence data. Genetics 2002;161:1307-20.
    • (2002) Genetics , vol.161 , pp. 1307-1320
    • Drummond, A.J.1    Nicholls, G.K.2    Rodrigo, A.G.3    Solomon, W.4
  • 41
  • 42
    • 17744381574 scopus 로고    scopus 로고
    • Bayesian coalescent inference of past population dynamics from molecular sequences
    • Drummond AJ, Rambaut A, Shapiro B, Pybus OG. Bayesian coalescent inference of past population dynamics from molecular sequences. Mol Biol Evol 2005;22:1185-92.
    • (2005) Mol Biol Evol , vol.22 , pp. 1185-1192
    • Drummond, A.J.1    Rambaut, A.2    Shapiro, B.3    Pybus, O.G.4
  • 43
    • 84858420452 scopus 로고    scopus 로고
    • Estimating the basic reproductive number from viral sequence data
    • Stadler T, Kouyos R, von Wyl V et al. Estimating the basic reproductive number from viral sequence data. Mol Biol Evol 2012;29:347-57.
    • (2012) Mol Biol Evol , vol.29 , pp. 347-357
    • Stadler, T.1    Kouyos, R.2    von Wyl, V.3
  • 44
    • 0013776758 scopus 로고
    • Molecules as documents of evolutionary history
    • Zuckerkandl E, Pauling L. Molecules as documents of evolutionary history. J Theor Biol 1965;8:357-66.
    • (1965) J Theor Biol , vol.8 , pp. 357-366
    • Zuckerkandl, E.1    Pauling, L.2
  • 46
    • 28944450584 scopus 로고    scopus 로고
    • Choosing appropriate substitution models for the phylogenetic analysis of protein-coding sequences
    • Shapiro B, Rambaut A, Drummond AJ. Choosing appropriate substitution models for the phylogenetic analysis of protein-coding sequences. Mol Biol Evol 2006;23:7-9.
    • (2006) Mol Biol Evol , vol.23 , pp. 7-9
    • Shapiro, B.1    Rambaut, A.2    Drummond, A.J.3
  • 48
    • 0000487096 scopus 로고
    • A Monte-Carlo method for high dimensional integration
    • Ogata Y. A Monte-Carlo method for high dimensional integration. Numer Math 1989;55:137-57.
    • (1989) Numer Math , vol.55 , pp. 137-157
    • Ogata, Y.1
  • 49
    • 0000736067 scopus 로고    scopus 로고
    • Simulating normalizing constants: from importance sampling to bridge sampling to path sampling
    • Gelman A, Meng X. Simulating normalizing constants: from importance sampling to bridge sampling to path sampling. Stat Sci 1998;13:163-85.
    • (1998) Stat Sci , vol.13 , pp. 163-185
    • Gelman, A.1    Meng, X.2
  • 50
    • 79951566251 scopus 로고    scopus 로고
    • Improving marginal likelihood estimation for Bayesian phylogenetic model selection
    • Xie W, Lewis P, Fan Y et al. Improving marginal likelihood estimation for Bayesian phylogenetic model selection. Syst Biol 2011;60:150-60.
    • (2011) Syst Biol , vol.60 , pp. 150-160
    • Xie, W.1    Lewis, P.2    Fan, Y.3
  • 51
    • 84865475040 scopus 로고    scopus 로고
    • Improving the accuracy of demographic and molecular clock model comparison while accommodating phylogenetic uncertainty
    • Baele G, Lemey P, Bedford T et al. Improving the accuracy of demographic and molecular clock model comparison while accommodating phylogenetic uncertainty. Mol Biol Evol 2012;29:2157-67.
    • (2012) Mol Biol Evol , vol.29 , pp. 2157-2167
    • Baele, G.1    Lemey, P.2    Bedford, T.3
  • 52
    • 26244463200 scopus 로고    scopus 로고
    • Sequence analysis of the 5' untranslated region of swine vesicular disease virus reveals block deletions between the end of the internal ribosomal entry site and the initiation codon
    • Shaw AE, Reid SM, Knowles NJ et al. Sequence analysis of the 5' untranslated region of swine vesicular disease virus reveals block deletions between the end of the internal ribosomal entry site and the initiation codon. J Gen Virol 2005;86:2753-61.
    • (2005) J Gen Virol , vol.86 , pp. 2753-2761
    • Shaw, A.E.1    Reid, S.M.2    Knowles, N.J.3
  • 53
    • 77956827656 scopus 로고    scopus 로고
    • Characterization of a putative ancestor of coxsackievirus B5
    • Gullberg M, Tolf C, Jonsson N et al. Characterization of a putative ancestor of coxsackievirus B5. J Virol 2010;84:9695-708.
    • (2010) J Virol , vol.84 , pp. 9695-9708
    • Gullberg, M.1    Tolf, C.2    Jonsson, N.3
  • 54
    • 84886262685 scopus 로고    scopus 로고
    • Phylogenetic patterns of human coxsackievirus B5 arise from population dynamics between two genogroups and reveal evolutionary factors of molecular adaptation and transmission
    • Henquell C, Mirand A, Richter J et al. Phylogenetic patterns of human coxsackievirus B5 arise from population dynamics between two genogroups and reveal evolutionary factors of molecular adaptation and transmission. J Virol 2013;87:12249-59.
    • (2013) J Virol , vol.87 , pp. 12249-12259
    • Henquell, C.1    Mirand, A.2    Richter, J.3
  • 55
    • 0034107811 scopus 로고    scopus 로고
    • Molecular epidemiology and evolution of coxsackievirus A9
    • Santti J, Harvala H, Kinnunen L, Hyypia T. Molecular epidemiology and evolution of coxsackievirus A9. J Gen Virol 2000;81:1361-72.
    • (2000) J Gen Virol , vol.81 , pp. 1361-1372
    • Santti, J.1    Harvala, H.2    Kinnunen, L.3    Hyypia, T.4
  • 56
    • 85051687001 scopus 로고    scopus 로고
    • in Eighteenth International Bioinformatics Workshop on Virus Evolution and Molecular Epidemiology. Emerging Pathogens Institute, University of Florida, FL
    • Baele G, Lemey P. Bayesian model testing using timestamped sequences-a hands-on practical. in Eighteenth International Bioinformatics Workshop on Virus Evolution and Molecular Epidemiology. Emerging Pathogens Institute, University of Florida, FL, 2013.
    • (2013) Bayesian model testing using timestamped sequences-a hands-on practical.
    • Baele, G.1    Lemey, P.2
  • 57
    • 0029883521 scopus 로고    scopus 로고
    • Bayesian hypothesis testing of four-taxon topologies using molecular sequence data
    • Sinsheimer JS, Lake JA, Little RJA. Bayesian hypothesis testing of four-taxon topologies using molecular sequence data. Biometrics 1996;52:193-210.
    • (1996) Biometrics , vol.52 , pp. 193-210
    • Sinsheimer, J.S.1    Lake, J.A.2    Little, R.J.A.3
  • 58
    • 0034983646 scopus 로고    scopus 로고
    • Bayesian selection of continuous-time Markov chain evolutionary models
    • Suchard MA, Weiss RE, Sinsheimer JS. Bayesian selection of continuous-time Markov chain evolutionary models. Mol Biol Evol 2001;18:1001-13.
    • (2001) Mol Biol Evol , vol.18 , pp. 1001-1013
    • Suchard, M.A.1    Weiss, R.E.2    Sinsheimer, J.S.3
  • 60
    • 75949164017 scopus 로고
    • An outbreak of aseptic meningitis associated with coxsackie B5 and A9 viruses in northern Japan 1961
    • Hinuma Y, Murai Y, Nakao T et al. An outbreak of aseptic meningitis associated with coxsackie B5 and A9 viruses in northern Japan 1961. Virological and serological studies. J Hyg 1964;62:159-70.
    • (1964) Virological and serological studies. J Hyg , vol.62 , pp. 159-170
    • Hinuma, Y.1    Murai, Y.2    Nakao, T.3
  • 61
    • 0013782966 scopus 로고
    • Persistence of neutralizing antibody to coxsackievirus B5 following aseptic meningitis
    • Hinuma Y, Nakao T. Persistence of neutralizing antibody to coxsackievirus B5 following aseptic meningitis. Jap J Med Sci Biol 1965;18:157-60.
    • (1965) Jap J Med Sci Biol , vol.18 , pp. 157-160
    • Hinuma, Y.1    Nakao, T.2
  • 62
    • 10244278839 scopus 로고
    • Clinical and epidemiological studies on outbreak of aseptic meningitis caused by coxsackie B5 and A9 viruses in Aomori in 1961
    • Nakao T, Nitta T, Miura R et al. Clinical and epidemiological studies on outbreak of aseptic meningitis caused by coxsackie B5 and A9 viruses in Aomori in 1961. Tohoku J Exp Med 1964;83:94-102.
    • (1964) Tohoku J Exp Med , vol.83 , pp. 94-102
    • Nakao, T.1    Nitta, T.2    Miura, R.3
  • 63
    • 0027053710 scopus 로고
    • Enteroviral aseptic-meningitis in Japan, 1981-1991-a report of the national epidemiologic surveillance of infectious agents in Japan
    • Yamashita K, Miyamura K, Yamadera S et al. Enteroviral aseptic-meningitis in Japan, 1981-1991-a report of the national epidemiologic surveillance of infectious agents in Japan. Jap J Med Sci Biol 1992;45:151-61.
    • (1992) Jap J Med Sci Biol , vol.45 , pp. 151-161
    • Yamashita, K.1    Miyamura, K.2    Yamadera, S.3


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.