메뉴 건너뛰기




Volumn 32, Issue 8, 2015, Pages 2036-2047

Inbreeding Affects Gene Expression Differently in Two Self-Incompatible Arabidopsis lyrata Populations with Similar Levels of Inbreeding Depression

Author keywords

Arabidopsis lyrata; Gene expression; Inbreeding; RNA seq; Stress related genes

Indexed keywords

CHLOROPHYLL A; CHLOROPHYLL B; CHLOROPHYLL BINDING PROTEIN; CYTOCHROME P450; GLYCOSIDASE; RNA;

EID: 84964908543     PISSN: 07374038     EISSN: 15371719     Source Type: Journal    
DOI: 10.1093/molbev/msv086     Document Type: Article
Times cited : (16)

References (62)
  • 1
    • 77958471357 scopus 로고    scopus 로고
    • Differential expression analysis for sequence count data
    • Anders S, Huber W. 2010. Differential expression analysis for sequence count data. Genome Biol. 11:R106.
    • (2010) Genome Biol , vol.11 , pp. R106
    • Anders, S.1    Huber, W.2
  • 4
    • 0037245913 scopus 로고    scopus 로고
    • Bind: The bio molecular interaction network database
    • Bader GD, Betel D, Hogue CW. 2003. BIND: The Bio molecular Interaction Network Database. Nucleic Acids Res. 31:248-250.
    • (2003) Nucleic Acids Res , vol.31 , pp. 248-250
    • Bader, G.D.1    Betel, D.2    Hogue, C.W.3
  • 5
    • 0026419950 scopus 로고
    • Effects of a change in the level of inbreeding on the genetic load
    • Barrett SCH, Charlesworth D. 1991. Effects of a change in the level of inbreeding on the genetic load. Nature 325:522-524.
    • (1991) Nature , vol.325 , pp. 522-524
    • Barrett, S.C.H.1    Charlesworth, D.2
  • 6
    • 0034024908 scopus 로고    scopus 로고
    • Does inbreeding affect the extinction risk of small populations? Predictions from drosophila
    • Bijlsma R, Bundgaard J, Boerema AC. 2000. Does inbreeding affect the extinction risk of small populations? Predictions from Drosophila. J Evol Biol. 13:502-514.
    • (2000) J Evol Biol , vol.13 , pp. 502-514
    • Bijlsma, R.1    Bundgaard, J.2    Boerema, A.C.3
  • 7
    • 22144455725 scopus 로고    scopus 로고
    • Correlated responses to selection for stress resistance and longevity in a laboratory population of drosophila melanogaster
    • Bubliy OA, Loeschcke V. 2005. Correlated responses to selection for stress resistance and longevity in a laboratory population of Drosophila melanogaster. J Evol Biol. 18:789-803.
    • (2005) J Evol Biol , vol.18 , pp. 789-803
    • Bubliy, O.A.1    Loeschcke, V.2
  • 8
    • 0030039694 scopus 로고    scopus 로고
    • Using bud pollinations to avoid self-incompatibility: Implications from studies of three mustards
    • Cabin RJ, Evans AS, Jennings DL, Marshall DL, Mitchell RJ, Sher AA. 1996. Using bud pollinations to avoid self-incompatibility: implications from studies of three mustards. Can J Bot. 74:285-289.
    • (1996) Can J Bot , vol.74 , pp. 285-289
    • Cabin, R.J.1    Evans, A.S.2    Jennings, D.L.3    Marshall, D.L.4    Mitchell, R.J.5    Sher, A.A.6
  • 9
    • 0000983047 scopus 로고
    • The distribution of the number of heterozygous loci in an individual in natural populations
    • Chakraborty R. 1981. The distribution of the number of heterozygous loci in an individual in natural populations. Genetics 98:461-466.
    • (1981) Genetics , vol.98 , pp. 461-466
    • Chakraborty, R.1
  • 10
    • 0023468755 scopus 로고
    • Inbreeding depression and its evolutionary consequences
    • Charlesworth D, Charlesworth B. 1987. Inbreeding depression and its evolutionary consequences. Annu Rev Ecol Syst. 18:237-268.
    • (1987) Annu Rev Ecol Syst , vol.18 , pp. 237-268
    • Charlesworth, D.1    Charlesworth, B.2
  • 11
    • 0000343315 scopus 로고
    • Inbreeding depression, genetic load, and the evolution of out crossing rates in a multi locus system with no linkage
    • Charlesworth D, Morgan MT, Charlesworth B. 1990. Inbreeding depression, genetic load, and the evolution of outcrossing rates in a multilocus system with no linkage. Evolution 44:1469-1489.
    • (1990) Evolution , vol.44 , pp. 1469-1489
    • Charlesworth, D.1    Morgan, M.T.2    Charlesworth, B.3
  • 12
    • 0027313002 scopus 로고
    • Mutation accumulation in finite outbreeding and inbreeding populations
    • Charlesworth D, Morgan MT, Charlesworth B. 1993. Mutation accumulation in finite outbreeding and inbreeding populations. Genet Res. 61:39-56.
    • (1993) Genet Res , vol.61 , pp. 39-56
    • Charlesworth, D.1    Morgan, M.T.2    Charlesworth, B.3
  • 13
    • 70350048798 scopus 로고    scopus 로고
    • The genetics of inbreeding depression
    • Charlesworth D, Willis JH. 2009. The genetics of inbreeding depression. Nat Rev Genet. 10:783-796.
    • (2009) Nat Rev Genet , vol.10 , pp. 783-796
    • Charlesworth, D.1    Willis, J.H.2
  • 14
    • 0036006376 scopus 로고    scopus 로고
    • Cross-species microsatellite markers for elucidating population genetic structure in Arabidopsis and Arabis (Brassicaeae)
    • Clauss MJ, Cobban H, Mitchell-Olds T. 2002. Cross-species microsatellite markers for elucidating population genetic structure in Arabidopsis and Arabis (Brassicaeae). Mol Ecol. 11:591-601.
    • (2002) Mol Ecol , vol.11 , pp. 591-601
    • Clauss, M.J.1    Cobban, H.2    Mitchell-Olds, T.3
  • 15
    • 33747768893 scopus 로고    scopus 로고
    • Poorly known relatives of Arabidopsis thaliana
    • Clauss MJ, Koch MA. 2006. Poorly known relatives of Arabidopsis thaliana. Trends Plant Sci. 11:449-459.
    • (2006) Trends Plant Sci , vol.11 , pp. 449-459
    • Clauss, M.J.1    Koch, M.A.2
  • 16
    • 24644503098 scopus 로고    scopus 로고
    • Blast 2GO: A universal tool for annotation, visualization and analysis in functional genomics research
    • Conesa A, Gotz S, Garcia-Gomez JM, Terol J, Talon M, Robles M. 2005. Blast2GO: A universal tool for annotation, visualization and analysis in functional genomics research. Bioinformatics 21: 3674-3676.
    • (2005) Bioinformatics , vol.21 , pp. 3674-3676
    • Conesa, A.1    Gotz, S.2    Garcia-Gomez, J.M.3    Terol, J.4    Talon, M.5    Robles, M.6
  • 18
    • 0002222865 scopus 로고
    • Average excess and average effect of a gene substitution
    • Fisher RA. 1941. Average excess and average effect of a gene substitution. Ann Hum Genet. 11:53-63.
    • (1941) Ann Hum Genet , vol.11 , pp. 53-63
    • Fisher, R.A.1
  • 19
    • 34447342560 scopus 로고    scopus 로고
    • Landscape structure, clonal propagation, and genetic diversity in Scandinavian populations of Arabidopsis lyrata (brassicaceae)
    • Gaudeul M, Stenøien HK, Ågren J. 2007. Landscape structure, clonal propagation, and genetic diversity in Scandinavian populations of Arabidopsis lyrata (Brassicaceae). Am J Bot. 94: 1146-1155.
    • (2007) Am J Bot , vol.94 , pp. 1146-1155
    • Gaudeul, M.1    Stenøien, H.K.2    Ågren, J.3
  • 20
    • 0026584271 scopus 로고
    • Protein folding in the cell
    • Gething MJ, Sambrook J. 1992. Protein folding in the cell. Nature 355: 33-45.
    • (1992) Nature , vol.355 , pp. 33-45
    • Gething, M.J.1    Sambrook, J.2
  • 22
    • 84929516975 scopus 로고    scopus 로고
    • Does inbreeding affect gene expression in birds?
    • Hansson B, Naurin S, Hasselquist D. 2014. Does inbreeding affect gene expression in birds? Biol Lett. 10:20140648.
    • (2014) Biol Lett , vol.10 , pp. 20140648
    • Hansson, B.1    Naurin, S.2    Hasselquist, D.3
  • 23
    • 38049024552 scopus 로고    scopus 로고
    • Heterozygosity-fitness correlations within inbreeding classes: Local or genome-wide effects?
    • Hansson B, Westerberg L. 2008. Heterozygosity-fitness correlations within inbreeding classes: local or genome-wide effects? Conserv Genet. 9:73-83.
    • (2008) Conserv Genet , vol.9 , pp. 73-83
    • Hansson, B.1    Westerberg, L.2
  • 24
    • 79960990305 scopus 로고    scopus 로고
    • Variation in actual relationship as a consequence of mendelian sampling and linkage
    • Hill WG, Weir BS. 2011. Variation in actual relationship as a consequence of Mendelian sampling and linkage. Genetics Res. 93: 47-64.
    • (2011) Genetics Res , vol.93 , pp. 47-64
    • Hill, W.G.1    Weir, B.S.2
  • 25
    • 0029666863 scopus 로고    scopus 로고
    • Evolution of the magnitude and timing of inbreeding depression in plants
    • Husband BC, Schemske DW. 1996. Evolution of the magnitude and timing of inbreeding depression in plants. Evolution 50:54-70.
    • (1996) Evolution , vol.50 , pp. 54-70
    • Husband, B.C.1    Schemske, D.W.2
  • 27
    • 0027333478 scopus 로고
    • The evolution of the selfing rate in functionally hermaphrodite plants and animals
    • Jarne P, Charlesworth D. 1993. The evolution of the selfing rate in functionally hermaphrodite plants and animals. Annu Rev Ecol Syst. 24:441-466.
    • (1993) Annu Rev Ecol Syst , vol.24 , pp. 441-466
    • Jarne, P.1    Charlesworth, D.2
  • 28
    • 0036273591 scopus 로고    scopus 로고
    • Self-incompatibility in the Brassicaceae: Receptor-ligand signaling and cell- To-cell communication
    • Kachroo A, Nasrallah ME, Nasrallah JB. 2002. Self-incompatibility in the Brassicaceae: receptor-ligand signaling and cell- To-cell communication. Plant Cell 14:S227-S238.
    • (2002) Plant Cell , vol.14 , pp. S227-S238
    • Kachroo, A.1    Nasrallah, M.E.2    Nasrallah, J.B.3
  • 31
    • 0036568655 scopus 로고    scopus 로고
    • Inbreeding effects in wild populations
    • Keller LF, Waller DM. 2002. Inbreeding effects in wild populations. Trends Ecol Evol. 17:230-241.
    • (2002) Trends Ecol Evol , vol.17 , pp. 230-241
    • Keller, L.F.1    Waller, D.M.2
  • 34
    • 26444578469 scopus 로고    scopus 로고
    • Genome-wide analysis on inbreeding effects on gene expression in drosophila melanogaster
    • Kristensen TN, Sorensen P, Kruhoffer M, Pedersen KS, Loeschcke V. 2005. Genome-wide analysis on inbreeding effects on gene expression in Drosophila melanogaster. Genetics 171:157-167.
    • (2005) Genetics , vol.171 , pp. 157-167
    • Kristensen, T.N.1    Sorensen, P.2    Kruhoffer, M.3    Pedersen, K.S.4    Loeschcke, V.5
  • 35
    • 33746399016 scopus 로고    scopus 로고
    • Inbreeding by environmental interactions affect gene expression in drosophila melanogaster
    • Kristensen TN, Sorensen P, Pedersen KS, Kruhoffer M, Loeschcke V. 2006. Inbreeding by environmental interactions affect gene expression in Drosophila melanogaster. Genetics 173:1329-1336.
    • (2006) Genetics , vol.173 , pp. 1329-1336
    • Kristensen, T.N.1    Sorensen, P.2    Pedersen, K.S.3    Kruhoffer, M.4    Loeschcke, V.5
  • 38
    • 84864563749 scopus 로고    scopus 로고
    • Inbreeding alters activities of the stress-related enzymes chitinases and beta-1, 3-glucanases
    • Leimu R, Kloss L, Fischer M. 2012. Inbreeding alters activities of the stress-related enzymes chitinases and beta-1, 3-glucanases. PLoS One 7:e42326.
    • (2012) PLoS One , vol.7 , pp. e42326
    • Leimu, R.1    Kloss, L.2    Fischer, M.3
  • 40
    • 33846249556 scopus 로고    scopus 로고
    • Trichome production and spatiotemporal variation in herbivory in the perennial herb arabidopsis lyrata
    • Løe G, Toräng P, Gaudeul M, Ågren J. 2007. Trichome production and spatiotemporal variation in herbivory in the perennial herb Arabidopsis lyrata. Oikos 116:134-142.
    • (2007) Oikos , vol.116 , pp. 134-142
    • Løe, G.1    Toräng, P.2    Gaudeul, M.3    Ågren, J.4
  • 41
    • 34548525898 scopus 로고    scopus 로고
    • Patterns of genetic diversity in out crossing and selfing populations of Arabidopsis lyrata
    • Mable BK, Adam A. 2007. Patterns of genetic diversity in outcrossing and selfing populations of Arabidopsis lyrata. Mol Ecol. 16: 3565-3580.
    • (2007) Mol Ecol , vol.16 , pp. 3565-3580
    • Mable, B.K.1    Adam, A.2
  • 42
    • 24044440971 scopus 로고    scopus 로고
    • Bingo: A cytoscape plugin to assess overrepresentation of gene ontology categories in biological networks
    • Maere S, Heymans K, Kuiper M. 2005. BiNGO: A Cytoscape plugin to assess overrepresentation of gene ontology categories in biological networks. Bioinformatics 21:3448-3449.
    • (2005) Bioinformatics , vol.21 , pp. 3448-3449
    • Maere, S.1    Heymans, K.2    Kuiper, M.3
  • 43
    • 78649775562 scopus 로고    scopus 로고
    • Enrichment map: A network-based method for gene-set enrichment visualization and interpretation
    • Merico D, Isserlin R, Stueker O, Emili A, Bader GD. 2010. Enrichment map: A network-based method for gene-set enrichment visualization and interpretation. PLoS One 5:e13984.
    • (2010) PLoS One , vol.5 , pp. e13984
    • Merico, D.1    Isserlin, R.2    Stueker, O.3    Emili, A.4    Bader, G.D.5
  • 44
    • 0030972694 scopus 로고    scopus 로고
    • Rapid induction by wounding and bacterial infection of an s gene family receptor-like kinase gene in Brassica Oleracea
    • Pastuglia M, Roby D, Dumas C, Cock JM. 1997. Rapid induction by wounding and bacterial infection of an S gene family receptor-like kinase gene in Brassica oleracea. Plant Cell 9:49-60.
    • (1997) Plant Cell , vol.9 , pp. 49-60
    • Pastuglia, M.1    Roby, D.2    Dumas, C.3    Cock, J.M.4
  • 45
    • 0037045414 scopus 로고    scopus 로고
    • Comparison of the expression patterns of two small gene families of s gene family receptor kinase genes during the defence response in Brassica oleracea and arabidopsis thaliana
    • Pastuglia M, Swarup R, Rocher A, Saindrenan P, Roby D, Dumas C, Cock JM. 2002. Comparison of the expression patterns of two small gene families of S gene family receptor kinase genes during the defence response in Brassica oleracea and Arabidopsis thaliana. Gene 282: 215-225.
    • (2002) Gene , vol.282 , pp. 215-225
    • Pastuglia, M.1    Swarup, R.2    Rocher, A.3    Saindrenan, P.4    Roby, D.5    Dumas, C.6    Cock, J.M.7
  • 46
    • 42249104880 scopus 로고    scopus 로고
    • Self/non self perception and recognition mechanisms in plants: A comparison of self-incompatibility and innate immunity
    • Sanabria N, Goring D, Nurnberger T, Dubery I. 2008. Self/non self perception and recognition mechanisms in plants: A comparison of self-incompatibility and innate immunity. New Phytol. 178: 503-513.
    • (2008) New Phytol , vol.178 , pp. 503-513
    • Sanabria, N.1    Goring, D.2    Nurnberger, T.3    Dubery, I.4
  • 47
    • 33847012074 scopus 로고    scopus 로고
    • Selection on flowering time and floral display in an alpine and a lowland population of Arabidopsis lyrata
    • Sandring S, Riihimäki MA, Savolainen O, Ågren J. 2007. Selection on flowering time and floral display in an alpine and a lowland population of Arabidopsis lyrata. J Evol Biol. 20:558-567.
    • (2007) J Evol Biol , vol.20 , pp. 558-567
    • Sandring, S.1    Riihimäki, M.A.2    Savolainen, O.3    Ågren, J.4
  • 48
    • 84870699895 scopus 로고    scopus 로고
    • Genomic tests of variation in inbreeding among individuals and among chromosomes
    • Schraiber JG, Shih S, Slatkin M. 2012. Genomic tests of variation in inbreeding among individuals and among chromosomes. Genetics 192:1477-1482.
    • (2012) Genetics , vol.192 , pp. 1477-1482
    • Schraiber, J.G.1    Shih, S.2    Slatkin, M.3
  • 49
    • 0036679053 scopus 로고    scopus 로고
    • Monitoring the expression profiles of 7000 Arabidopsis genes under drought, cold and high-salinity stresses using a full-length cDNA microarray
    • Seki M, Narusaka M, Ishida J, Nanjo T, Fujita M, Oono Y, Kamiya A, Nakajima M, Enju A, Sakurai T, et al. 2002. Monitoring the expression profiles of 7000 Arabidopsis genes under drought, cold and high-salinity stresses using a full-length cDNA microarray. Plant J. 31:279-292.
    • (2002) Plant J , vol.31 , pp. 279-292
    • Seki, M.1    Narusaka, M.2    Ishida, J.3    Nanjo, T.4    Fujita, M.5    Oono, Y.6    Kamiya, A.7    Nakajima, M.8    Enju, A.9    Sakurai, T.10
  • 51
    • 84859589502 scopus 로고    scopus 로고
    • Variation in tolerance to drought among Scandinavian populations of Arabidopsis lyrata
    • Sletvold N, Ågren J. 2012. Variation in tolerance to drought among Scandinavian populations of Arabidopsis lyrata. Evol Ecol. 26: 559-577.
    • (2012) Evol Ecol , vol.26 , pp. 559-577
    • Sletvold, N.1    Ågren, J.2
  • 52
    • 84885072377 scopus 로고    scopus 로고
    • Strong inbreeding depression in two Scandinavian populations of the self incompatible perennial herb Arabidopsis lyrata
    • Sletvold N, Mousset M, Hagenblad J, Hansson B, Ågren J. 2013. Strong inbreeding depression in two Scandinavian populations of the self incompatible perennial herb Arabidopsis lyrata. Evolution 67: 2876-2888.
    • (2013) Evolution , vol.67 , pp. 2876-2888
    • Sletvold, N.1    Mousset, M.2    Hagenblad, J.3    Hansson, B.4    Ågren, J.5
  • 54
    • 0242574386 scopus 로고    scopus 로고
    • The evolutionary and ecological role of heat shock proteins
    • Sorensen JG, Kristensen TN, Loeschcke V. 2003. The evolutionary and ecological role of heat shock proteins. Ecol Lett. 6:1025-1037.
    • (2003) Ecol Lett , vol.6 , pp. 1025-1037
    • Sorensen, J.G.1    Kristensen, T.N.2    Loeschcke, V.3
  • 55
    • 33845789612 scopus 로고    scopus 로고
    • The association among gene expression responses to nine Abiotic stress treatments in Arabidopsis thaliana
    • Swindell WR. 2006. The association among gene expression responses to nine abiotic stress treatments in Arabidopsis thaliana. Genetics 174: 1811-1824.
    • (2006) Genetics , vol.174 , pp. 1811-1824
    • Swindell, W.R.1
  • 56
    • 12144291195 scopus 로고    scopus 로고
    • Mapman: A user-driven tool to display genomics data sets onto diagrams of metabolic pathways and other biological processes
    • Thimm O, Blasing O, Gibon Y, Nagel A, Meyer S, Kruger P, Selbig J, Muller LA, Rhee SY, Stitt M. 2004. MAPMAN: A user-driven tool to display genomics data sets onto diagrams of metabolic pathways and other biological processes. Plant J. 37:914-939.
    • (2004) Plant J , vol.37 , pp. 914-939
    • Thimm, O.1    Blasing, O.2    Gibon, Y.3    Nagel, A.4    Meyer, S.5    Kruger, P.6    Selbig, J.7    Muller, L.A.8    Rhee, S.Y.9    Stitt, M.10
  • 57
    • 0037653656 scopus 로고    scopus 로고
    • Fitness costs of r-gene-mediated resistance in Arabidopsis thaliana
    • Tian D, Traw MB, Chen JQ, Kreitman M, Bergelson J. 2003. Fitness costs of R-gene-mediated resistance in Arabidopsis thaliana. Nature 423: 74-77.
    • (2003) Nature , vol.423 , pp. 74-77
    • Tian, D.1    Traw, M.B.2    Chen, J.Q.3    Kreitman, M.4    Bergelson, J.5
  • 58
    • 65449136284 scopus 로고    scopus 로고
    • Top hat: Discovering splice junctions with RNA-Seq
    • Trapnell C, Pachter L, Salzberg SL. 2009. Top Hat: discovering splice junctions with RNA-Seq. Bioinformatics 25:1105-1111.
    • (2009) Bioinformatics , vol.25 , pp. 1105-1111
    • Trapnell, C.1    Pachter, L.2    Salzberg, S.L.3
  • 59
    • 84891783174 scopus 로고    scopus 로고
    • Activities at the universal protein resource (Uniprot)
    • UniProt Consortium
    • UniProt Consortium. 2014. Activities at the Universal Protein Resource (UniProt). Nucleic Acids Res. 42:D191-D198.
    • (2014) Nucleic Acids Res , vol.42 , pp. D191-D198
  • 62
    • 0034800374 scopus 로고    scopus 로고
    • Interproscan- An integration platform for the signature-recognition methods in interpro
    • Zdobnov EM, Apweiler R. 2001. InterProScan- An integration platform for the signature-recognition methods in InterPro. Bioinformatics 17: 847-848.
    • (2001) Bioinformatics , vol.17 , pp. 847-848
    • Zdobnov, E.M.1    Apweiler, R.2


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.