-
1
-
-
72949107142
-
Introducing mothur: Open-source, platform-independent, community-supported software for describing and comparing microbial communities
-
Schloss, P. D., Westcott, S. L., Ryabin, T. et al. (2009) Introducing mothur: open-source, platform-independent, community-supported software for describing and comparing microbial communities. Appl. Environ. Microbiol., 75, 7537-7541.
-
(2009)
Appl. Environ. Microbiol.
, vol.75
, pp. 7537-7541
-
-
Schloss, P.D.1
Westcott, S.L.2
Ryabin, T.3
-
2
-
-
77952243141
-
Qiime allows analysis of high-throughput community sequencing data
-
Caporaso, J. G., Kuczynski, J., Stombaugh, J. et al. (2010) QIIME allows analysis of high-throughput community sequencing data. Nat. Methods, 7, 335-336.
-
(2010)
Nat. Methods
, vol.7
, pp. 335-336
-
-
Caporaso, J.G.1
Kuczynski, J.2
Stombaugh, J.3
-
3
-
-
33847702910
-
Megan analysis of metagenomics data
-
Huson, D. H., Auch, A. F., Qi, F. et al. (2007) MEGAN analysis of metagenomics data. Genome Res., 17, 377-386.
-
(2007)
Genome Res.
, vol.17
, pp. 377-386
-
-
Huson, D.H.1
Auch, A.F.2
Qi, F.3
-
4
-
-
84864462144
-
Metagenassist: A comprehensive web server for comparative metagenomics
-
Arndt, D., Xia, J., Liu, Y. et al. (2012) METAGENassist: a comprehensive web server for comparative metagenomics. Nucleic Acids Res., 40, W88-W95.
-
(2012)
Nucleic Acids Res.
, vol.40
, pp. W88-W95
-
-
Arndt, D.1
Xia, J.2
Liu, Y.3
-
5
-
-
53549118607
-
The metagenomics rast server - A public resource for the automatic phylogenetic and functional analysis of metagenomes
-
Meyer, F., Paarmann, D., D'Souza, M. et al. (2008) The metagenomics RAST server - a public resource for the automatic phylogenetic and functional analysis of metagenomes. BMC Bioinformatics, 9, 386.
-
(2008)
BMC Bioinformatics
, vol.9
, pp. 386
-
-
Meyer, F.1
Paarmann, D.2
D'Souza, M.3
-
6
-
-
84891800783
-
IMG/M 4 version of the integrated metagenomce comparative analysis system
-
Markowitz, V. M., Chen, I. M., Chu, K. et al. (2014) IMG/M 4 version of the integrated metagenomce comparative analysis system. Nucleic Acids Res, 42, D568-D573.
-
(2014)
Nucleic Acids Res
, vol.42
, pp. D568-D573
-
-
Markowitz, V.M.1
Chen, I.M.2
Chu, K.3
-
7
-
-
79955749319
-
Minimum information about a marker gene sequence (MIMARKS) and minimum information about any (x) sequence (MIxS) specifications
-
Yilmaz, P., Kottmann, R., Field, D. et al. (2011) Minimum information about a marker gene sequence (MIMARKS) and minimum information about any (x) sequence (MIxS) specifications. Nat. Biotech., 29, 415-420.
-
(2011)
Nat. Biotech.
, vol.29
, pp. 415-420
-
-
Yilmaz, P.1
Kottmann, R.2
Field, D.3
-
8
-
-
83355173006
-
Reducing the effects of PCR amplification and sequencing artifacts on 16S rRNA-based studies
-
Schloss, P. D., Gevers, D., and Westcott, S. L. (2011) Reducing the effects of PCR amplification and sequencing artifacts on 16S rRNA-based studies. PloS One, 6, e27310.
-
(2011)
PloS One
, vol.6
, pp. e27310
-
-
Schloss, P.D.1
Gevers, D.2
Westcott, S.L.3
-
9
-
-
0034870192
-
Quantifying biodiversity: Procedures and pitfalls in the measurement and comparison of species richness
-
Gotelli, N. J. and Colwel, R. K. (2001) Quantifying biodiversity: procedures and pitfalls in the measurement and comparison of species richness. Ecol. Lett., 4, 379-391.
-
(2001)
Ecol. Lett.
, vol.4
, pp. 379-391
-
-
Gotelli, N.J.1
Colwel, R.K.2
-
10
-
-
84875796786
-
Undersampling and the measurement of beta diversity
-
Beck, J., Holloway, J. D., and Schwanghart, W. (2013) Undersampling and the measurement of beta diversity. Methods Ecol. Evol, 4, 370-382.
-
(2013)
Methods Ecol. Evol
, vol.4
, pp. 370-382
-
-
Beck, J.1
Holloway, J.D.2
Schwanghart, W.3
-
11
-
-
83155182603
-
Evaluation of subsampling-based normalization strategies for tagged high-throughput sequencing data sets from gut microbiomes
-
Aguirre De Cárcer, D., Denman, S. E., McSweeney, C., and Morrison, M. (2011) Evaluation of subsampling-based normalization strategies for tagged high-throughput sequencing data sets from gut microbiomes. Appl. Environ. Microbiol., 77, 8795-8798.
-
(2011)
Appl. Environ. Microbiol.
, vol.77
, pp. 8795-8798
-
-
Aguirre De Cárcer, D.1
Denman, S.E.2
McSweeney, C.3
Morrison, M.4
-
13
-
-
84924629414
-
Moderated estimation of fold change and dispersion for RNA-seq data with DESeq2
-
Love, M. I., Huber, W., and Anders, S. (2014) Moderated estimation of fold change and dispersion for RNA-seq data with DESeq2. Genome Biol., 15, 550.
-
(2014)
Genome Biol.
, vol.15
, pp. 550
-
-
Love, M.I.1
Huber, W.2
Anders, S.3
-
14
-
-
84868270724
-
The Biological Observation Matrix (BIOM) format or: How I learned to stop worrying and love the ome-ome
-
McDonald, D., Clemente, J. C., Kuczynski, J. et al. (2012) The Biological Observation Matrix (BIOM) format or: how I learned to stop worrying and love the ome-ome. GigaScience, 1, 7.
-
(2012)
GigaScience
, vol.1
, pp. 7
-
-
McDonald, D.1
Clemente, J.C.2
Kuczynski, J.3
-
16
-
-
79960069580
-
Integrating high-throughput pyrosequencing and quantitative real-time PCR to analyze complex microbial communities
-
Kwon, Y. M., and Ricke, S. C. eds, Springer Science+Business Media LLC, New York
-
Zhang, H., Parameswara, P., Badalamenti, J.,. et al. (2011) Integrating high-throughput pyrosequencing and quantitative real-time PCR to analyze complex microbial communities. In: Kwon, Y. M., and Ricke, S. C. (eds). High-Throughput Next Generation Sequencing: Methods and Application. Methods in Molecular Biology, vol. 733, Springer Science+Business Media LLC, New York, pp. 107-128.
-
(2011)
High-throughput Next Generation Sequencing: Methods and Application. Methods in Molecular Biology
, vol.733
, pp. 107-128
-
-
Zhang, H.1
Parameswara, P.2
Badalamenti J3
-
17
-
-
84947580948
-
Estimating beta diversity for under-sampled communities using the variably weighted odum dissimilarity index and otushuff
-
Manter, D. K. and Bakker, M. G. (2015) Estimating beta diversity for under-sampled communities using the variably weighted Odum dissimilarity index and OTUshuff. BioInformatics, 31, 3451-3459.
-
(2015)
BioInformatics
, vol.31
, pp. 3451-3459
-
-
Manter, D.K.1
Bakker, M.G.2
-
20
-
-
74049093630
-
Sparse partial least squares regression for simultaneous dimension reduction and variable selection
-
Chun, H. and Keles, S. (2010) Sparse partial least squares regression for simultaneous dimension reduction and variable selection. R. Stat. Soc. Ser. B Stat. Methodol., 72, 3-25.
-
(2010)
R. Stat. Soc. Ser. B Stat. Methodol.
, vol.72
, pp. 3-25
-
-
Chun, H.1
Keles, S.2
|