-
1
-
-
84946074739
-
The InterPro protein families database: The classification resource after 15 years
-
Mitchell, A., Chang, H. Y., Daugherty, L., et al. (2015) The InterPro protein families database: the classification resource after 15 years. Nucleic Acids Res., 43, D213-D221.
-
(2015)
Nucleic Acids Res.
, vol.43
, pp. D213-D221
-
-
Mitchell, A.1
Chang, H.Y.2
Daugherty, L.3
-
2
-
-
84949224197
-
Using CATH-Gene3D to analyze the sequence, structure, and function of proteins
-
Sillitoe, I., Lewis, T., and Orengo, C. (2015) Using CATH-Gene3D to analyze the sequence, structure, and function of proteins. Curr. Protoc. Bioinformatics, 50, 1.28.1-1.28.21.
-
(2015)
Curr. Protoc. Bioinformatics
, vol.50
, pp. 1281-12821
-
-
Sillitoe, I.1
Lewis, T.2
Orengo, C.3
-
3
-
-
84946030378
-
HAMAP in 2015: Updates to the protein family classification and annotation system
-
Pedruzzi, I., Rivoire, C., Auchincloss, A. H., et al. (2015) HAMAP in 2015: updates to the protein family classification and annotation system. Nucleic Acids Res., 43, D1064-D1070.
-
(2015)
Nucleic Acids Res.
, vol.43
, pp. D1064-D1070
-
-
Pedruzzi, I.1
Rivoire, C.2
Auchincloss, A.H.3
-
4
-
-
84874969184
-
PANTHER in 2013: Modeling the evolution of gene function, and other gene attributes, in the context of phylogenetic trees
-
Mi, H., Muruganujan, A., and Thomas, P. D. (2013) PANTHER in 2013: modeling the evolution of gene function, and other gene attributes, in the context of phylogenetic trees. Nucleic Acids Res., 41, D377-D386.
-
(2013)
Nucleic Acids Res.
, vol.41
, pp. D377-D386
-
-
Mi, H.1
Muruganujan, A.2
Thomas, P.D.3
-
5
-
-
84891782659
-
Pfam: The protein families database
-
Finn, R. D., Bateman, A., Clements, J., et al. (2014) Pfam: the protein families database. Nucleic Acids Res., 42, D222-D230.
-
(2014)
Nucleic Acids Res.
, vol.42
, pp. D222-D230
-
-
Finn, R.D.1
Bateman, A.2
Clements, J.3
-
6
-
-
84862252899
-
The PRINTS database: A fine-grained protein sequence annotation and analysis resource-its status in 2012
-
Attwood, T. K., Coletta, A., Muirhead, G., et al. (2012) The PRINTS database: a fine-grained protein sequence annotation and analysis resource-its status in 2012. Database, 2012, bas019.
-
(2012)
Database
, vol.2012
, pp. bas019
-
-
Attwood, T.K.1
Coletta, A.2
Muirhead, G.3
-
7
-
-
0000120520
-
ProDom: Automated clustering of homologous domains
-
Servant, F., Bru, C., Carrère, S., et al. (2002) ProDom: automated clustering of homologous domains. Brief Bioinform., 3, 246-251.
-
(2002)
Brief Bioinform.
, vol.3
, pp. 246-251
-
-
Servant, F.1
Bru, C.2
Carrère, S.3
-
8
-
-
84876588470
-
New and continuing developments at PROSITE
-
Sigrist, C. J., de Castro, E., Cerutti, L., et al. (2013) New and continuing developments at PROSITE. Nucleic Acids Res., 41, D344-D347.
-
(2013)
Nucleic Acids Res.
, vol.41
, pp. D344-D347
-
-
Sigrist, C.J.1
De Castro, E.2
Cerutti, L.3
-
9
-
-
84946060416
-
SMART: Recent updates, new developments and status in 2015
-
Letunic, I., Doerks, T., and Bork, P. (2015) SMART: recent updates, new developments and status in 2015. Nucleic Acids Res., 43, D257-D260.
-
(2015)
Nucleic Acids Res.
, vol.43
, pp. D257-D260
-
-
Letunic, I.1
Doerks, T.2
Bork, P.3
-
10
-
-
84941032473
-
The SUPERFAMILY 1.75 database in 2014: A doubling of data
-
Oates, M. E., Stahlhacke, J., Vavoulis, D. V., et al. (2015) The SUPERFAMILY 1.75 database in 2014: a doubling of data. Nucleic Acids Res., 43, D227-D233.
-
(2015)
Nucleic Acids Res.
, vol.43
, pp. D227-D233
-
-
Oates, M.E.1
Stahlhacke, J.2
Vavoulis, D.V.3
-
11
-
-
84876134492
-
TIGRFAMs and genome properties in 2013
-
Haft, D. H., Selengut, J. D., Richter, R. A., et al. (2013) TIGRFAMs and Genome Properties in 2013. Nucleic Acids Res., 41, D387-D395.
-
(2013)
Nucleic Acids Res.
, vol.41
, pp. D387-D395
-
-
Haft, D.H.1
Selengut, J.D.2
Richter, R.A.3
-
12
-
-
84946069451
-
UniProt: A hub for protein information
-
UniProt Consortium (2015) UniProt: a hub for protein information. Nucleic Acids Res., 43, D204-D212.
-
(2015)
Nucleic Acids Res.
, vol.43
, pp. D204-D212
-
-
UniProt Consortium1
-
13
-
-
0034069495
-
Gene ontology: Tool for the unification of biology
-
Ashburner, M., Ball, C. A., Blake, J. A., et al. (2000) Gene ontology: tool for the unification of biology. The Gene Ontology Consortium. Nat. Genet., 25, 25-29.
-
(2000)
The Gene Ontology Consortium. Nat. Genet.
, vol.25
, pp. 25-29
-
-
Ashburner, M.1
Ball, C.A.2
Blake, J.A.3
-
14
-
-
84863693531
-
Quality of computationally inferred gene ontology annotations
-
Skunca, N., Altenhoff, A., and Dessimoz, C. (2012) Quality of computationally inferred gene ontology annotations. PLoS Comput Biol., 8, e1002533.
-
(2012)
PLoS Comput Biol.
, vol.8
, pp. e1002533
-
-
Skunca, N.1
Altenhoff, A.2
Dessimoz, C.3
-
15
-
-
84905166669
-
Understanding how and why the Gene Ontology and its annotations evolve: The GO within UniProt
-
Huntley, R. P., Sawford, T., Martin, M. J., et al. (2014) Understanding how and why the Gene Ontology and its annotations evolve: the GO within UniProt. Gigascience, 3, 4.
-
(2014)
Gigascience
, vol.3
, pp. 4
-
-
Huntley, R.P.1
Sawford, T.2
Martin, M.J.3
-
16
-
-
75549084894
-
PANTHER version 7: Improved phylogenetic trees, orthologs and collaboration with the Gene Ontology Consortium
-
Mi, H., Dong, Q., Muruganujan, A., et al. (2010) PANTHER version 7: improved phylogenetic trees, orthologs and collaboration with the Gene Ontology Consortium. Nucleic. Acids Res., 38, D204-D210.
-
(2010)
Nucleic. Acids Res.
, vol.38
, pp. D204-D210
-
-
Mi, H.1
Dong, Q.2
Muruganujan, A.3
-
17
-
-
84976875034
-
PANTHER version 10: Expanded protein families and functions, and analysis tools
-
Mi, H., Poudel, S., Muruganujan, A., et al. (2016) PANTHER version 10: expanded protein families and functions, and analysis tools. Nucleic Acids Res., 44, D336-D342.
-
(2016)
Nucleic Acids Res.
, vol.44
, pp. D336-D342
-
-
Mi, H.1
Poudel, S.2
Muruganujan, A.3
-
18
-
-
78049336905
-
Whole-exome sequencing identifies recessive WDR62 mutations in severe brain malformations
-
Bilgüvar, K., Oztürk, A. K., Louvi, A., et al. (2010) Whole-exome sequencing identifies recessive WDR62 mutations in severe brain malformations. Nature, 467, 207-210.
-
(2010)
Nature
, vol.467
, pp. 207-210
-
-
Bilgüvar, K.1
Oztürk, A.K.2
Louvi, A.3
-
19
-
-
84896795351
-
Plant cysteine oxidases control the oxygen-dependent branch of the N-end-rule pathway
-
Weits, D. A., Giuntoli, B., Kosmacz, M., et al. (2014) Plant cysteine oxidases control the oxygen-dependent branch of the N-end-rule pathway. Nat. Commun., 5, 3425.
-
(2014)
Nat. Commun.
, vol.5
, pp. 3425
-
-
Weits, D.A.1
Giuntoli, B.2
Kosmacz, M.3
-
20
-
-
84929095679
-
Active site and laminarin binding in glycoside hydrolase family 55
-
Bianchetti, C. M., Takasuka, T. E., Deutsch, S., et al. (2015) Active site and laminarin binding in glycoside hydrolase family 55. J. Biol. Chem., 290, 11819-11832.
-
(2015)
J. Biol. Chem.
, vol.290
, pp. 11819-11832
-
-
Bianchetti, C.M.1
Takasuka, T.E.2
Deutsch, S.3
-
21
-
-
45549107329
-
Use and misuse of the gene ontology annotations
-
Rhee, S. Y., Wood, V., Dolinski, K. et al. (2008) Use and misuse of the gene ontology annotations. Nat. Rev. Genet., 9, 509-515.
-
(2008)
Nat. Rev. Genet.
, vol.9
, pp. 509-515
-
-
Rhee, S.Y.1
Wood, V.2
Dolinski, K.3
-
22
-
-
0029915568
-
The human cytomegalovirus US11 gene product dislocates MHC class I heavy chains from the endoplasmic reticulum to the cytosol
-
Wiertz, E. J., Jones, T. R., Sun, L., et al. (1996) The human cytomegalovirus US11 gene product dislocates MHC class I heavy chains from the endoplasmic reticulum to the cytosol. Cell, 84, 769-779.
-
(1996)
Cell
, vol.84
, pp. 769-779
-
-
Wiertz, E.J.1
Jones, T.R.2
Sun, L.3
|