Population-based incidence rates of diarrheal disease associated with norovirus, sapovirus, and astrovirus in Kenya

PLoS ONE

Volumn 11, Issue 4, 2016, Pages

  Shioda, Kayoko ^a,b   Cosmas, Leonard ^c   Audi, Allan ^d   Gregoricus, Nicole ^a   Vinjé, Jan ^a   Parashar, Umesh D ^a   Montgomery, Joel M ^c   Feikin, Daniel R ^a,c   Breiman, Robert F ^c,e   Hall, Aron J ^a  

^a NATIONAL CENTER FOR IMMUNIZATION AND RESPIRATORY DISEASES   (United States)

^b Oak Ridge Institute for Science and Technology   (United States)

^c CENTERS FOR DISEASE CONTROL AND PREVENTION   (United States)

^d KENYA MEDICAL RESEARCH INSTITUTE   (Kenya)

^e EMORY UNIVERSITY   (United States)

Author keywords

[No Author keywords available]

Indexed keywords

ADOLESCENT; ADULT; AGE DISTRIBUTION; AGED; ARTICLE; ASTROVIRIDAE; CONTROLLED STUDY; DEVELOPING COUNTRY; DISEASE SURVEILLANCE; FECES ANALYSIS; FEMALE; GEOGRAPHIC DISTRIBUTION; HUMAN; INCIDENCE; INFANT; INFECTIOUS DIARRHEA; KENYA; MAJOR CLINICAL STUDY; MALE; MIDDLE AGED; MORTALITY; NONHUMAN; NOROVIRUS; PREVALENCE; REAL TIME POLYMERASE CHAIN REACTION; REVERSE TRANSCRIPTION POLYMERASE CHAIN REACTION; SAPOVIRUS; SEX DIFFERENCE; URBAN AREA; VIRUS DETECTION; ASTROVIRIDAE INFECTIONS; CALICIVIRIDAE INFECTIONS; CHILD; DIARRHEA; EPIDEMIOLOGICAL MONITORING; GASTROENTERITIS; MAMASTROVIRUS; NEWBORN; PRESCHOOL CHILD; VERY ELDERLY; VIROLOGY; YOUNG ADULT;

ADOLESCENT; ADULT; AGED; AGED, 80 AND OVER; ASTROVIRIDAE; ASTROVIRIDAE INFECTIONS; CALICIVIRIDAE INFECTIONS; CHILD; CHILD, PRESCHOOL; DIARRHEA; EPIDEMIOLOGICAL MONITORING; FEMALE; GASTROENTERITIS; HUMANS; INCIDENCE; INFANT; INFANT, NEWBORN; KENYA; MALE; MAMASTROVIRUS; MIDDLE AGED; NOROVIRUS; SAPOVIRUS; YOUNG ADULT;

EID: 84964704950     PISSN: None     EISSN: 19326203     Source Type: Journal    
DOI: 10.1371/journal.pone.0145943     Document Type: Article

References (34)

1. GBD 2013 Mortality and Causes of Death Collaborators. Global, regional, and national age-sex specific all-cause and cause-specific mortality for 240 causes of death, 1990-2013: a systematic analysis for the Global Burden of Disease Study 2013. Lancet. 2014. Epub 2014/12/23. doi: 10.1016/s0140-6736 (14)61682-2 PMID: 25530442.
2. Fischer Walker CL, Perin J, Aryee MJ, Boschi-Pinto C, Black RE. Diarrhea incidence in low- and middle-income countries in 1990 and 2010: a systematic review. BMC Public Health. 2012; 12:220. Epub 2012/03/23. doi: 10.1186/1471-2458-12-220 PMID: 22436130; PubMed Central PMCID: PMCPMC3323412.
3. Tsolenyanu E, Seheri M, Dagnra A, Djadou E, Tigossou S, Nyaga M, et al. Surveillance for rotavirus gastroenteritis in children less than 5 years of age in Togo. Pediatr Infect Dis J. 2014; 33 Suppl 1:S14-8. Epub 2013/12/18. doi: 10.1097/inf.0000000000000046 PMID: 24343607.
4. Abebe A, Teka T, Kassa T, Seheri M, Beyene B, Teshome B, et al. Hospital-based surveillance for rotavirus gastroenteritis in children younger than 5 years of age in Ethiopia: 2007-2012. Pediatr Infect Dis J. 2014; 33 Suppl 1:S28-33. Epub 2013/12/18. doi: 10.1097/inf.0000000000000048 PMID: 24343610.
5. Khagayi S, Burton DC, Onkoba R, Ochieng B, Ismail A, Mutonga D, et al. High burden of rotavirus gastroenteritis in young children in rural western Kenya, 2010-2011. Pediatr Infect Dis J. 2014; 33 Suppl 1: S34-40. Epub 2013/12/18. doi: 10.1097/inf.0000000000000049 PMID: 24343611.
6. Mwenda JM, Tate JE, Parashar UD, Mihigo R, Agocs M, Serhan F, et al. African rotavirus surveillance network: a brief overview. Pediatr Infect Dis J. 2014; 33 Suppl 1:S6-8. Epub 2013/12/18. doi: 10.1097/ inf.0000000000000174 PMID: 24343616.
7. Ogilvie I, Khoury H, Goetghebeur MM, El Khoury AC, Giaquinto C. Burden of community-acquired and nosocomial rotavirus gastroenteritis in the pediatric population of Western Europe: a scoping review. BMC Infect Dis. 2012; 12:62. Epub 2012/03/21. doi: 10.1186/1471-2334-12-62 PMID: 22429601; PubMed Central PMCID: PMCPMC3342230.
8. Gastanaduy PA, Hall AJ, Curns AT, Parashar UD, Lopman BA. Burden of norovirus gastroenteritis in the ambulatory setting-United States, 2001-2009. J Infect Dis. 2013; 207(7):1058-65. Epub 2013/01/10. doi: 10.1093/infdis/jis942 PMID: 23300161.
9. Ahmed SM, Hall AJ, Robinson AE, Verhoef L, Premkumar P, Parashar UD, et al. Global prevalence of norovirus in cases of gastroenteritis: a systematic review and meta-analysis. Lancet Infect Dis. 2014; 14(8):725-30. Epub 2014/07/02. doi: 10.1016/s1473-3099(14)70767-4 PMID: 24981041.
10. Armah GE, Sow SO, Breiman RF, Dallas MJ, Tapia MD, Feikin DR, et al. Efficacy of pentavalent rotavirus vaccine against severe rotavirus gastroenteritis in infants in developing countries in sub-Saharan Africa: a randomised, double-blind, placebo-controlled trial. Lancet. 2010; 376(9741):606-14. Epub 2010/08/10. doi: 10.1016/s0140-6736(10)60889-6 PMID: 20692030.
11. Groome MJ, Page N, Cortese MM, Moyes J, Zar HJ, Kapongo CN, et al. Effectiveness of monovalent human rotavirus vaccine against admission to hospital for acute rotavirus diarrhoea in South African children: a case-control study. Lancet Infect Dis. 2014; 14(11):1096-104. Epub 2014/10/12. doi: 10. 1016/s1473-3099(14)70940-5 PMID: 25303843.
12. Feikin DR, Laserson KF, Ojwando J, Nyambane G, Ssempijja V, Audi A, et al. Efficacy of pentavalent rotavirus vaccine in a high HIV prevalence population in Kenya. Vaccine. 2012; 30 Suppl 1:A52-60. Epub 2012/05/02. doi: 10.1016/j.vaccine.2011.08.043 PMID: 22520137.
13. Madhi SA, Cunliffe NA, Steele D, Witte D, Kirsten M, Louw C, et al. Effect of human rotavirus vaccine on severe diarrhea in African infants. N Engl J Med. 2010; 362(4):289-98. Epub 2010/01/29. doi: 10. 1056/NEJMoa0904797 PMID: 20107214.
14. Breiman RF, Cosmas L, Audi A, Mwiti W, Njuguna H, Bigogo GM, et al. Use of population-based surveillance to determine the incidence of rotavirus gastroenteritis in an urban slum and a rural setting in Kenya. Pediatr Infect Dis J. 2014; 33 Suppl 1:S54-61. Epub 2013/12/18. doi: 10.1097/inf. 0000000000000094 PMID: 24343615.
15. Feikin DR, Olack B, Bigogo GM, Audi A, Cosmas L, Aura B, et al. The burden of common infectious disease syndromes at the clinic and household level from population-based surveillance in rural and urban Kenya. PLoS ONE. 2011; 6(1):e16085. Epub 2011/01/27. doi: 10.1371/journal.pone.0016085 PMID: 21267459; PubMed Central PMCID: PMCPMC3022725.
16. Podkolzin AT, Fenske EB, Abramycheva NY, Shipulin GA, Sagalova OI, Mazepa VN, et al. Hospitalbased surveillance of rotavirus and other viral agents of diarrhea in children and adults in Russia, 2005-2007. J Infect Dis. 2009; 200 Suppl 1:S228-33. Epub 2009/10/13. doi: 10.1086/605054 PMID: 19817602.
17. Hill VR, Mull B, Jothikumar N, Ferdinand K, Vinjé J. Detection of GI and GII Noroviruses in Ground Water Using Ultrafiltration and TaqMan Real-time RT-PCR. Food and Environmental Virology. 2010; 2 (4):218-24
18. Trujillo AA, McCaustland KA, Zheng DP, Hadley LA, Vaughn G, Adams SM, et al. Use of TaqMan realtime reverse transcription-PCR for rapid detection, quantification, and typing of norovirus. J Clin Microbiol. 2006; 44(4):1405-12. Epub 2006/04/07. doi: 10.1128/jcm.44.4.1405-1412.2006 PMID: 16597869; PubMed Central PMCID: PMCPMC1448641.
19. Kageyama T, Kojima S, Shinohara M, Uchida K, Fukushi S, Hoshino FB, et al. Broadly reactive and highly sensitive assay for Norwalk-like viruses based on real-time quantitative reverse transcription-PCR. J Clin Microbiol. 2003; 41(4):1548-57. Epub 2003/04/19. PMID: 12682144; PubMed Central PMCID: PMCPMC153860.
20. Oka T, Katayama K, Hansman GS, Kageyama T, Ogawa S, Wu FT, et al. Detection of human sapovirus by real-time reverse transcription-polymerase chain reaction. J Med Virol. 2006; 78(10):1347-53. Epub 2006/08/24. doi: 10.1002/jmv.20699 PMID: 16927293.
21. Dennehy PH, Gauntlett DR, Spangenberger SE. Choice of reference assay for the detection of rotavirus in fecal specimens: electron microscopy versus enzyme immunoassay. J Clin Microbiol. 1990; 28 (6):1280-3. Epub 1990/06/01. PMID: 2166080; PubMed Central PMCID: PMCPmc267919.
22. Krieg N, Holt J, Bergey (1984). Bergey's manual of systematic bacteriology/Krieg Noel R., editor, volume 1; Holt John G., editor-in-chief. Baltimore: Williams & Wilkins 4 v.xxvii, 2648.
23. Kenya National Bureau of Statistics. The 2009 Kenya Population and Housing Census. 2010.
24. Payne DC, Vinje J, Szilagyi PG, Edwards KM, Staat MA, Weinberg GA, et al. Norovirus and medically attended gastroenteritis in U.S. children. N Engl J Med. 2013; 368(12):1121-30. Epub 2013/03/22. doi: 10.1056/NEJMsa1206589 PMID: 23514289.
25. Hemming M, Rasanen S, Huhti L, Paloniemi M, Salminen M, Vesikari T. Major reduction of rotavirus, but not norovirus, gastroenteritis in children seen in hospital after the introduction of RotaTeq vaccine into the National Immunization Programme in Finland. Eur J Pediatr. 2013; 172(6):739-46. Epub 2013/ 01/31. doi: 10.1007/s00431-013-1945-3 PMID: 23361964.
26. Hall AJ, Lopman BA, Payne DC, Patel MM, Gastanaduy PA, Vinje J, et al. Norovirus disease in the United States. Emerg Infect Dis. 2013; 19(8):1198-205. Epub 2013/07/24. doi: 10.3201/eid1908.130465 PMID: 23876403; PubMed Central PMCID: PMCPMC3739528.
27. Scallan E, Hoekstra RM, Angulo FJ, Tauxe RV, Widdowson MA, Roy SL, et al. Foodborne illness acquired in the United States-major pathogens. Emerg Infect Dis. 2011; 17(1):7-15. Epub 2011/01/05. doi: 10.3201/eid1701.091101p1 PMID: 21192848; PubMed Central PMCID: PMCPMC3375761.
28. Hall AJ, Rosenthal M, Gregoricus N, Greene SA, Ferguson J, Henao OL, et al. Incidence of acute gastroenteritis and role of norovirus, Georgia, USA, 2004-2005. Emerg Infect Dis. 2011; 17(8):1381-8. Epub 2011/08/02. doi: 10.3201/eid1708.101533 PMID: 21801613; PubMed Central PMCID: PMCPMC3381564.
29. Verhoef L, Koopmans M, VANP W, Duizer E, Haagsma J, Werber D, et al. The estimated disease burden of norovirus in The Netherlands. Epidemiol Infect. 2013; 141(3):496-506. Epub 2012/05/19. doi: 10.1017/s0950268812000799 PMID: 22595489.
30. Phillips G, Tam CC, Conti S, Rodrigues LC, Brown D, Iturriza-Gomara M, et al. Community incidence of norovirus-associated infectious intestinal disease in England: improved estimates using viral load for norovirus diagnosis. Am J Epidemiol. 2010; 171(9):1014-22. Epub 2010/04/03. doi: 10.1093/aje/ kwq021 PMID: 20360244.
31. Tam CC, Rodrigues LC, Viviani L, Dodds JP, Evans MR, Hunter PR, et al. Longitudinal study of infectious intestinal disease in the UK (IID2 study): incidence in the community and presenting to general practice. Gut. 2012; 61(1):69-77. Epub 2011/06/29. doi: 10.1136/gut.2011.238386 PMID: 21708822; PubMed Central PMCID: PMCPMC3230829.
32. Chhabra P, Payne DC, Szilagyi PG, Edwards KM, Staat MA, Shirley SH, et al. Etiology of viral gastroenteritis in children <5 years of age in the United States, 2008-2009. J Infect Dis. 2013; 208(5):790-800. Epub 2013/06/13. doi: 10.1093/infdis/jit254 PMID: 23757337.
33. Becker-Dreps S, Bucardo F, Vilchez S, Zambrana LE, Liu L, Weber DJ, et al. Etiology of childhood diarrhea after rotavirus vaccine introduction: a prospective, population-based study in Nicaragua. Pediatr Infect Dis J. 2014; 33(11):1156-63. Epub 2014/06/01. doi: 10.1097/inf.0000000000000427 PMID: 24879131; PubMed Central PMCID: PMCPMC4216626.
34. Dennehy PH, Nelson SM, Spangenberger S, Noel JS, Monroe SS, Glass RI. A prospective case-control study of the role of astrovirus in acute diarrhea among hospitalized young children. J Infect Dis. 2001; 184(1):10-5. Epub 2001/06/09. doi: 10.1086/321007 PMID: 11398103.