-
1
-
-
84873299648
-
Fast and robust optical flow for time-lapse microscopy using super-voxels
-
Amat F, Myers EW, Keller PJ. 2013. Fast and robust optical flow for time-lapse microscopy using super-voxels. Bioinformatics 29:373-380. doi: 10.1093/bioinformatics/bts706.
-
(2013)
Bioinformatics
, vol.29
, pp. 373-380
-
-
Amat, F.1
Myers, E.W.2
Keller, P.J.3
-
2
-
-
0037091112
-
Epithelia-mesenchyme interaction plays an essential role in transdifferentiation of retinal pigment epithelium of silver mutant quail: Localization of {FGF} and related molecules and aberrant migration pattern of neural crest cells during eye rudiment for
-
Araki M, Takano T, Uemonsa T, Nakane Y, Tsudzuki M, Kaneko T. 2002. Epithelia-mesenchyme interaction plays an essential role in transdifferentiation of retinal pigment epithelium of silver mutant quail: localization of {FGF} and related molecules and aberrant migration pattern of neural crest cells during eye rudiment for. Developmental Biology 244:358-371. doi: 10.1006/dbio.2002.0591.
-
(2002)
Developmental Biology
, vol.244
, pp. 358-371
-
-
Araki, M.1
Takano, T.2
Uemonsa, T.3
Nakane, Y.4
Tsudzuki, M.5
Kaneko, T.6
-
3
-
-
20244364533
-
Transdifferentiation of the retinal pigment epithelia to the neural retina by transfer of the Pax6 transcriptional factor
-
Azuma N, Tadokoro K, Asaka A, Yamada M, Yamaguchi Y, Handa H, Matsushima S, Watanabe T, Kida Y, Ogura T, Torii M, Shimamura K, Nakafuku M. 2005. Transdifferentiation of the retinal pigment epithelia to the neural retina by transfer of the Pax6 transcriptional factor. Human Molecular Genetics 14:1059-1068. doi: 10.1093/hmg/ddi098.
-
(2005)
Human Molecular Genetics
, vol.14
, pp. 1059-1068
-
-
Azuma, N.1
Tadokoro, K.2
Asaka, A.3
Yamada, M.4
Yamaguchi, Y.5
Handa, H.6
Matsushima, S.7
Watanabe, T.8
Kida, Y.9
Ogura, T.10
Torii, M.11
Shimamura, K.12
Nakafuku, M.13
-
4
-
-
84918836444
-
Multiple requirements of the focal dermal hypoplasia gene porcupine during ocular morphogenesis
-
Bankhead EJ, Colasanto MP, Dyorich KM, Jamrich M, Murtaugh LC, Fuhrmann S. 2015. Multiple requirements of the focal dermal hypoplasia gene porcupine during ocular morphogenesis. The American Journal of Pathology 185:197-213. doi: 10.1016/j.ajpath.2014.09.002.
-
(2015)
The American Journal of Pathology
, vol.185
, pp. 197-213
-
-
Bankhead, E.J.1
Colasanto, M.P.2
Dyorich, K.M.3
Jamrich, M.4
Murtaugh, L.C.5
Fuhrmann, S.6
-
5
-
-
33846583365
-
The level of BMP4 signaling is critical for the regulation of distinct T-box gene expression domains and growth along the dorso-ventral axis of the optic cup
-
Behesti H, Holt JK, Sowden JC. 2006. The level of BMP4 signaling is critical for the regulation of distinct T-box gene expression domains and growth along the dorso-ventral axis of the optic cup. BMC Developmental Biology 6:62. doi: 10.1186/1471-213X-6-62.
-
(2006)
BMC Developmental Biology
, vol.6
, pp. 62
-
-
Behesti, H.1
Holt, J.K.2
Sowden, J.C.3
-
6
-
-
84867728445
-
Numb/Numbl-Opo antagonism controls retinal epithelium morphogenesis by regulating integrin endocytosis
-
Bogdanović O, Delfino-Machín M, Nicolás-Pérez M, Gavilán MP, Gago-Rodrigues I, Fernández-Miñán A, Lillo C, Ríos RM, Wittbrodt J, Martínez-Morales JR. 2012. Numb/Numbl-Opo antagonism controls retinal epithelium morphogenesis by regulating integrin endocytosis. Developmental Cell 23:782-795. doi: 10.1016/j.devcel.2012. 09.004.
-
(2012)
Developmental Cell
, vol.23
, pp. 782-795
-
-
Bogdanović, O.1
Delfino-McHín, M.2
Nicolás-Pérez, M.3
Gavilán, M.P.4
Gago-Rodrigues, I.5
Fernández-Miñán, A.6
Lillo, C.7
Ríos, R.M.8
Wittbrodt, J.9
Martínez-Morales, J.R.10
-
7
-
-
82755171268
-
Fate restriction and multipotency in retinal stem cells
-
Centanin L, Hoeckendorf B, Wittbrodt J. 2011. Fate restriction and multipotency in retinal stem cells. Cell Stem Cell 9:553-562. doi: 10.1016/j.stem.2011.11.004.
-
(2011)
Cell Stem Cell
, vol.9
, pp. 553-562
-
-
Centanin, L.1
Hoeckendorf, B.2
Wittbrodt, J.3
-
9
-
-
79953749322
-
Selforganizing optic-cup morphogenesis in three-dimensional culture
-
Eiraku M, Takata N, Ishibashi H, Kawada M, Sakakura E, Okuda S, Sekiguchi K, Adachi T, Sasai Y. 2011. Selforganizing optic-cup morphogenesis in three-dimensional culture. Nature 472:51-56. doi: 10.1038/nature09941.
-
(2011)
Nature
, vol.472
, pp. 51-56
-
-
Eiraku, M.1
Takata, N.2
Ishibashi, H.3
Kawada, M.4
Sakakura, E.5
Okuda, S.6
Sekiguchi, K.7
Adachi, T.8
Sasai, Y.9
-
10
-
-
33846100981
-
A dynamic fate map of the forebrain shows how vertebrate eyes form and explains two causes of cyclopia
-
England SJ, Blanchard GB, Mahadevan L, Adams RJ. 2006. A dynamic fate map of the forebrain shows how vertebrate eyes form and explains two causes of cyclopia. Development 133:4613-4617. doi: 10.1242/dev. 02678.
-
(2006)
Development
, vol.133
, pp. 4613-4617
-
-
England, S.J.1
Blanchard, G.B.2
Mahadevan, L.3
Adams, R.J.4
-
11
-
-
68349146494
-
Gdf6a is required for the initiation of dorsalventral retinal patterning and lens development
-
French CR, Erickson T, French DV, Pilgrim DB, Waskiewicz AJ. 2009. Gdf6a is required for the initiation of dorsalventral retinal patterning and lens development. Developmental Biology 333:37-47. doi: 10.1016/j.ydbio.2009. 06.018.
-
(2009)
Developmental Biology
, vol.333
, pp. 37-47
-
-
French, C.R.1
Erickson, T.2
French, D.V.3
Pilgrim, D.B.4
Waskiewicz, A.J.5
-
12
-
-
0033709572
-
Extraocular mesenchyme patterns the optic vesicle during early eye development in the embryonic chick
-
Fuhrmann S, Levine EM, Reh TA. 2000. Extraocular mesenchyme patterns the optic vesicle during early eye development in the embryonic chick. Development 127:4599-4609.
-
(2000)
Development
, vol.127
, pp. 4599-4609
-
-
Fuhrmann, S.1
Levine, E.M.2
Reh, T.A.3
-
13
-
-
77957901007
-
Eye morphogenesis and patterning of the optic vesicle
-
Fuhrmann S. 2010. Eye morphogenesis and patterning of the optic vesicle. Current Topics in Developmental Biology 93:61-84. doi: 10.1016/B978-0-12-385044-7.00003-5.
-
(2010)
Current Topics in Developmental Biology
, vol.93
, pp. 61-84
-
-
Fuhrmann, S.1
-
14
-
-
84895928046
-
Sfrp1a and Sfrp5 function as positive regulators of Wnt and {BMP} signaling during early retinal development
-
Holly VL, Widen SA, Famulski JK, Waskiewicz AJ. 2014. Sfrp1a and Sfrp5 function as positive regulators of Wnt and {BMP} signaling during early retinal development. Developmental Biology 388:192-204. doi: 10.1016/j.ydbio. 2014.01.012.
-
(2014)
Developmental Biology
, vol.388
, pp. 192-204
-
-
Holly, V.L.1
Widen, S.A.2
Famulski, J.K.3
Waskiewicz, A.J.4
-
15
-
-
0038642451
-
Optic cup morphogenesis requires pre-lens ectoderm but not lens differentiation
-
Hyer J, Kuhlman J, Afif E, Mikawa T. 2003. Optic cup morphogenesis requires pre-lens ectoderm but not lens differentiation. Developmental Biology 259:351-363. doi: 10.1016/S0012-1606(03)00205-7.
-
(2003)
Developmental Biology
, vol.259
, pp. 351-363
-
-
Hyer, J.1
Kuhlman, J.2
Afif, E.3
Mikawa, T.4
-
16
-
-
84887607869
-
Precocious acquisition of neuroepithelial character in the eye field underlies the onset of eye morphogenesis
-
Ivanovitch K, Cavodeassi F, Wilson SW. 2013. Precocious acquisition of neuroepithelial character in the eye field underlies the onset of eye morphogenesis. Developmental Cell 27:293-305. doi: 10.1016/j.devcel.2013.09.023.
-
(2013)
Developmental Cell
, vol.27
, pp. 293-305
-
-
Ivanovitch, K.1
Cavodeassi, F.2
Wilson, S.W.3
-
17
-
-
58149139574
-
V2a and V2b neurons are generated by the final divisions of pairproducing progenitors in the zebrafish spinal cord
-
Kimura Y, Satou C, Higashijima SI. 2008. V2a and V2b neurons are generated by the final divisions of pairproducing progenitors in the zebrafish spinal cord. Development 135:3001-3005. doi: 10.1242/dev.024802.
-
(2008)
Development
, vol.135
, pp. 3001-3005
-
-
Kimura, Y.1
Satou, C.2
Higashijima, S.I.3
-
18
-
-
0034614689
-
Tbx5 and the retinotectum projection
-
Koshiba-Takeuchi K, Takeuchi JK, Matsumoto K, Momose T, Uno K, Hoepker V, Ogura K, Takahashi N, Nakamura H, Yasuda K, Ogura T. 2000. Tbx5 and the retinotectum projection. Science 287:134-137. doi: 10.1126/science. 287.5450.134.
-
(2000)
Science
, vol.287
, pp. 134-137
-
-
Koshiba-Takeuchi, K.1
Takeuchi, J.K.2
Matsumoto, K.3
Momose, T.4
Uno, K.5
Hoepker, V.6
Ogura, K.7
Takahashi, N.8
Nakamura, H.9
Yasuda, K.10
Ogura, T.11
-
19
-
-
36448963734
-
The Tol2kit: A multisite gateway-based construction kit for Tol2 transposon transgenesis constructs
-
Kwan KM, Fujimoto E, Grabher C, Mangum BD, Hardy ME, Campbell DS, Parant JM, Yost HJ, Kanki JP, Chien CB. 2007. The Tol2kit: a multisite gateway-based construction kit for Tol2 transposon transgenesis constructs. Developmental Dynamics 236:3088-3099. doi: 10.1002/dvdy.21343.
-
(2007)
Developmental Dynamics
, vol.236
, pp. 3088-3099
-
-
Kwan, K.M.1
Fujimoto, E.2
Grabher, C.3
Mangum, B.D.4
Hardy, M.E.5
Campbell, D.S.6
Parant, J.M.7
Yost, H.J.8
Kanki, J.P.9
Chien, C.B.10
-
20
-
-
83755225218
-
A complex choreography of cell movements shapes the vertebrate eye
-
Kwan KM, Otsuna H, Kidokoro H, Carney KR, Saijoh Y, Chien CB. 2012. A complex choreography of cell movements shapes the vertebrate eye. Development 139:359-372. doi: 10.1242/dev.071407.
-
(2012)
Development
, vol.139
, pp. 359-372
-
-
Kwan, K.M.1
Otsuna, H.2
Kidokoro, H.3
Carney, K.R.4
Saijoh, Y.5
Chien, C.B.6
-
21
-
-
79951643123
-
Dynamic analysis of BMP-responsive smad activity in live zebrafish embryos
-
Laux DW, Febbo JA, Roman BL. 2011. Dynamic analysis of BMP-responsive smad activity in live zebrafish embryos. Developmental Dynamics 240:682-694. doi: 10.1002/dvdy.22558.
-
(2011)
Developmental Dynamics
, vol.240
, pp. 682-694
-
-
Laux, D.W.1
Febbo, J.A.2
Roman, B.L.3
-
22
-
-
0034058031
-
The morphogenesis of the zebrafish eye, including a fate map of the optic vesicle
-
Li Z, Joseph NM, Easter SS. 2000. The morphogenesis of the zebrafish eye, including a fate map of the optic vesicle. Developmental Dynamics 218:175-188. doi: 10.1002/(SICI)1097-0177(200005)218:1<175::AIDDVDY15> 3.0.CO;2-K.
-
(2000)
Developmental Dynamics
, vol.218
, pp. 175-188
-
-
Li, Z.1
Joseph, N.M.2
Easter, S.S.3
-
23
-
-
69549110656
-
ojoplano-mediated basal constriction is essential for optic cup morphogenesis
-
Martinez-Morales JR, Rembold M, Greger K, Simpson JC, Brown KE, Quiring R, Pepperkok R, Martin-Bermudo MD, Himmelbauer H, Wittbrodt J. 2009. ojoplano-mediated basal constriction is essential for optic cup morphogenesis. Development 136:2165-2175. doi: 10.1242/dev.033563.
-
(2009)
Development
, vol.136
, pp. 2165-2175
-
-
Martinez-Morales, J.R.1
Rembold, M.2
Greger, K.3
Simpson, J.C.4
Brown, K.E.5
Quiring, R.6
Pepperkok, R.7
Martin-Bermudo, M.D.8
Himmelbauer, H.9
Wittbrodt, J.10
-
24
-
-
84855958004
-
Methods for cell and particle tracking
-
Meijering E, Dzyubachyk O, Smal I. 2012. Methods for cell and particle tracking. Methods Enzymol 504:183-200. doi: 10.1016/B978-0-12-391857-4.00009-4.
-
(2012)
Methods Enzymol
, vol.504
, pp. 183-200
-
-
Meijering, E.1
Dzyubachyk, O.2
Smal, I.3
-
25
-
-
33747615066
-
Proper patterning of the optic fissure requires the sequential activity of BMP7 and SHH
-
Morcillo J, Martínez-Morales JR, Trousse F, Fermin Y, Sowden JC, Bovolenta P. 2006. Proper patterning of the optic fissure requires the sequential activity of BMP7 and SHH. Development 133:3179-3190. doi: 10.1242/dev. 02493.
-
(2006)
Development
, vol.133
, pp. 3179-3190
-
-
Morcillo, J.1
Martínez-Morales, J.R.2
Trousse, F.3
Fermin, Y.4
Sowden, J.C.5
Bovolenta, P.6
-
26
-
-
35648992431
-
Bone morphogenetic proteins specify the retinal pigment epithelium in the chick embryo
-
Müller F, Rohrer H, Vogel-Höpker A. 2007. Bone morphogenetic proteins specify the retinal pigment epithelium in the chick embryo. Development 134:3483-3493. doi: 10.1242/dev.02884.
-
(2007)
Development
, vol.134
, pp. 3483-3493
-
-
Müller, F.1
Rohrer, H.2
Vogel-Höpker, A.3
-
27
-
-
70350520202
-
Dynamic coupling of pattern formation and morphogenesis in the developing vertebrate retina
-
Picker A, Cavodeassi F, Machate A, Bernauer S, Hans S, Abe G, Kawakami K, Wilson SW, Brand M. 2009. Dynamic coupling of pattern formation and morphogenesis in the developing vertebrate retina. PLOS Biology 7: e1000214. doi: 10.1371/journal.pbio.1000214.
-
(2009)
PLOS Biology
, vol.7
-
-
Picker, A.1
Cavodeassi, F.2
McHate, A.3
Bernauer, S.4
Hans, S.5
Abe, G.6
Kawakami, K.7
Wilson, S.W.8
Brand, M.9
-
28
-
-
3042512333
-
Large-scale expression screening by automated whole-mount in situ hybridization
-
Quiring R, Wittbrodt B, Henrich T, Ramialison M, Burgtorf C, Lehrach H, Wittbrodt J. 2004. Large-scale expression screening by automated whole-mount in situ hybridization. Mechanisms of Development 121:971-976. doi: 10. 1016/j.mod.2004.03.031.
-
(2004)
Mechanisms of Development
, vol.121
, pp. 971-976
-
-
Quiring, R.1
Wittbrodt, B.2
Henrich, T.3
Ramialison, M.4
Burgtorf, C.5
Lehrach, H.6
Wittbrodt, J.7
-
29
-
-
33748084400
-
Individual cell migration serves as the driving force for optic vesicle evagination
-
Rembold M, Loosli F, Adams RJ, Wittbrodt J. 2006. Individual cell migration serves as the driving force for optic vesicle evagination. Science 313:1130-1134. doi: 10.1126/science.1127144.
-
(2006)
Science
, vol.313
, pp. 1130-1134
-
-
Rembold, M.1
Loosli, F.2
Adams, R.J.3
Wittbrodt, J.4
-
30
-
-
0030752232
-
Basic fibroblast growth factor (FGF-2) induced transdifferentiation of retinal pigment epithelium: Generation of retinal neurons and glia
-
Sakaguchi DS, Janick LM, Reh TA. 1997. Basic fibroblast growth factor (FGF-2) induced transdifferentiation of retinal pigment epithelium: generation of retinal neurons and glia. Developmental Dynamics 209:387-398. doi: 10.1002/(SICI)1097-0177(199708)209:4<387::AID-AJA6>3.0.CO;2-E.
-
(1997)
Developmental Dynamics
, vol.209
, pp. 387-398
-
-
Sakaguchi, D.S.1
Janick, L.M.2
Reh, T.A.3
-
31
-
-
0035816588
-
Ventroptin: A BMP-4 antagonist expressed in a double-gradient pattern in the retina
-
Sakuta H, Suzuki R, Takahashi H, Kato A, Shintani T, Iemura Si, Yamamoto TS, Ueno N, Noda M. 2001. Ventroptin: a BMP-4 antagonist expressed in a double-gradient pattern in the retina. Science 293:111-115. doi: 10.1126/ science.1058379.
-
(2001)
Science
, vol.293
, pp. 111-115
-
-
Sakuta, H.1
Suzuki, R.2
Takahashi, H.3
Kato, A.4
Shintani, T.5
Iemura, S.6
Yamamoto, T.S.7
Ueno, N.8
Noda, M.9
-
32
-
-
0036076390
-
Axes establishment during eye morphogenesis in Xenopus by coordinate and antagonistic actions of BMP4, Shh, and RA
-
Sasagawa S, Takabatake T, Takabatake Y, Muramatsu T, Takeshima K. 2002. Axes establishment during eye morphogenesis in Xenopus by coordinate and antagonistic actions of BMP4, Shh, and RA. Genesis 33:86-96. doi: 10.1002/gene.10095.
-
(2002)
Genesis
, vol.33
, pp. 86-96
-
-
Sasagawa, S.1
Takabatake, T.2
Takabatake, Y.3
Muramatsu, T.4
Takeshima, K.5
-
33
-
-
84862520770
-
Fiji: An open-source platform for biological-image analysis
-
Schindelin J, Arganda-Carreras I, Frise E, Kaynig V, Longair M, Pietzsch T, Preibisch S, Rueden C, Saalfeld S, Schmid B, Tinevez JY, White DJ, Hartenstein V, Eliceiri K, Tomancak P, Cardona A. 2012. Fiji: an open-source platform for biological-image analysis. Nature Methods 9:676-682. doi: 10.1038/nmeth.2019.
-
(2012)
Nature Methods
, vol.9
, pp. 676-682
-
-
Schindelin, J.1
Arganda-Carreras, I.2
Frise, E.3
Kaynig, V.4
Longair, M.5
Pietzsch, T.6
Preibisch, S.7
Rueden, C.8
Saalfeld, S.9
Schmid, B.10
Tinevez, J.Y.11
White, D.J.12
Hartenstein, V.13
Eliceiri, K.14
Tomancak, P.15
Cardona, A.16
-
34
-
-
0028306801
-
Early eye morphogenesis in the zebrafish, Brachydanio rerio
-
Schmitt EA, Dowling JE. 1994. Early eye morphogenesis in the zebrafish, Brachydanio rerio. Journal of Comparative Neurology 344:532-542. doi: 10.1002/cne.903440404.
-
(1994)
Journal of Comparative Neurology
, vol.344
, pp. 532-542
-
-
Schmitt, E.A.1
Dowling, J.E.2
-
35
-
-
80052926765
-
Vsx1 regulates terminal differentiation of type 7 ON bipolar cells
-
Shi Z, Trenholm S, Zhu M, Buddingh S, Star EN, Awatramani GB, Chow RL. 2011. Vsx1 regulates terminal differentiation of type 7 ON bipolar cells. The Journal of Neuroscience 31:13118-13127. doi: 10.1523/ JNEUROSCI.2331-11.2011.
-
(2011)
The Journal of Neuroscience
, vol.31
, pp. 13118-13127
-
-
Shi, Z.1
Trenholm, S.2
Zhu, M.3
Buddingh, S.4
Star, E.N.5
Awatramani, G.B.6
Chow, R.L.7
-
36
-
-
84879839902
-
An eye on eye development
-
Sinn R, Wittbrodt J. 2013. An eye on eye development. Mechanisms of Development 130:347-358. doi: 10.1016/j. mod.2013.05.001.
-
(2013)
Mechanisms of Development
, vol.130
, pp. 347-358
-
-
Sinn, R.1
Wittbrodt, J.2
-
37
-
-
84888878399
-
RPE specification in the chick is mediated by surface ectoderm-derived BMP and Wnt signalling
-
Steinfeld J, Steinfeld I, Coronato N, Hampel ML, Layer PG, Araki M, Vogel-Höpker A. 2013. RPE specification in the chick is mediated by surface ectoderm-derived BMP and Wnt signalling. Development 140:4959-4969. doi: 10.1242/dev.096990.
-
(2013)
Development
, vol.140
, pp. 4959-4969
-
-
Steinfeld, J.1
Steinfeld, I.2
Coronato, N.3
Hampel, M.L.4
Layer, P.G.5
Araki, M.6
Vogel-Höpker, A.7
-
38
-
-
26444515002
-
The structure of the follistatin:Activin complex reveals antagonism of both type I and type II receptor binding
-
Thompson TB, Lerch TF, Cook RW, Woodruff TK, Jardetzky TS. 2005. The structure of the follistatin:activin complex reveals antagonism of both type I and type II receptor binding. Developmental Cell 9:535-543. doi: 10. 1016/j.devcel.2005.09.008.
-
(2005)
Developmental Cell
, vol.9
, pp. 535-543
-
-
Thompson, T.B.1
Lerch, T.F.2
Cook, R.W.3
Woodruff, T.K.4
Jardetzky, T.S.5
-
39
-
-
84875598281
-
Unilateral dampening of Bmp activity by nodal generates cardiac left-right asymmetry
-
Veerkamp J, Rudolph F, Cseresnyes Z, Priller F, Otten C, Renz M, Schaefer L, Abdelilah-Seyfried S. 2013. Unilateral dampening of Bmp activity by nodal generates cardiac left-right asymmetry. Developmental Cell 24:660-667. doi: 10.1016/j.devcel.2013.01.026.
-
(2013)
Developmental Cell
, vol.24
, pp. 660-667
-
-
Veerkamp, J.1
Rudolph, F.2
Cseresnyes, Z.3
Priller, F.4
Otten, C.5
Renz, M.6
Schaefer, L.7
Abdelilah-Seyfried, S.8
-
40
-
-
65949086608
-
Vsx2 in the zebrafish retina: Restricted lineages through derepression
-
Vitorino M, Jusuf PR, Maurus D, Kimura Y, Higashijima S, Harris WA. 2009. Vsx2 in the zebrafish retina: restricted lineages through derepression. Neural Development 4:14. doi: 10.1186/1749-8104-4-14.
-
(2009)
Neural Development
, vol.4
, pp. 14
-
-
Vitorino, M.1
Jusuf, P.R.2
Maurus, D.3
Kimura, Y.4
Higashijima, S.5
Harris, W.A.6
|