-
1
-
-
10144235484
-
4-D single particle tracking of synthetic and proteinaceous microspheres reveals preferential movement of nuclear particles along chromatin-poor tracks
-
C.P. Bacher, M. Reichenzeller, C. Athale, H. Herrmann, and R. Eils 4-D single particle tracking of synthetic and proteinaceous microspheres reveals preferential movement of nuclear particles along chromatin-poor tracks BMC Cell Biol. 5 2004 1 14
-
(2004)
BMC Cell Biol.
, vol.5
, pp. 1-14
-
-
Bacher, C.P.1
Reichenzeller, M.2
Athale, C.3
Herrmann, H.4
Eils, R.5
-
2
-
-
25444448000
-
Automated measurement of cell motility and proliferation
-
A. Bahnson, C. Athanassiou, D. Koebler, L. Qian, T. Shun, D. Shields, H. Yu, H. Wang, J. Goff, T. Cheng, R. Houck, and L. Cowsert Automated measurement of cell motility and proliferation BMC Cell Biol. 6 2005 19
-
(2005)
BMC Cell Biol.
, vol.6
, pp. 19
-
-
Bahnson, A.1
Athanassiou, C.2
Koebler, D.3
Qian, L.4
Shun, T.5
Shields, D.6
Yu, H.7
Wang, H.8
Goff, J.9
Cheng, T.10
Houck, R.11
Cowsert, L.12
-
3
-
-
34250882643
-
Quantitative morphological signatures define local signaling networks regulating cell morphology
-
DOI 10.1126/science.1140324
-
C. Bakal, J. Aach, G. Church, and N. Perrimon Quantitative morphological signatures define local signaling networks regulating cell morphology Science 316 2007 1753 1756 (Pubitemid 46988551)
-
(2007)
Science
, vol.316
, Issue.5832
, pp. 1753-1756
-
-
Bakal, C.1
Aach, J.2
Church, G.3
Perrimon, N.4
-
5
-
-
41049096731
-
Associative image analysis: A method for automated quantification of 3D multi-parameter images of brain tissue
-
C.S. Bjornsson, G. Lin, Y. Al-Kofahi, A. Narayanaswamy, K.L. Smith, W. Shain, and B. Roysam Associative image analysis: A method for automated quantification of 3D multi-parameter images of brain tissue J. Neurosci. Methods 170 2008 165 178
-
(2008)
J. Neurosci. Methods
, vol.170
, pp. 165-178
-
-
Bjornsson, C.S.1
Lin, G.2
Al-Kofahi, Y.3
Narayanaswamy, A.4
Smith, K.L.5
Shain, W.6
Roysam, B.7
-
6
-
-
26444459812
-
Single quantum dot tracking based on perceptual grouping using minimal paths in a spatiotemporal volume
-
DOI 10.1109/TIP.2005.852794
-
S. Bonneau, M. Dahan, and L.D. Cohen Single quantum dot tracking based on perceptual grouping using minimal paths in a spatiotemporal volume IEEE Trans. Image Process. 14 2005 1384 1395 (Pubitemid 41430900)
-
(2005)
IEEE Transactions on Image Processing
, vol.14
, Issue.9
, pp. 1384-1395
-
-
Bonneau, S.1
Dahan, M.2
Cohen, L.D.3
-
7
-
-
61449230736
-
Analysis of cell movement by simultaneous quantification of local membrane displacement and fluorescent intensities using Quimp2
-
L. Bosgraaf, P.J.M. van Haastert, and T. Bretschneider Analysis of cell movement by simultaneous quantification of local membrane displacement and fluorescent intensities using Quimp2 Cell Motil. Cytoskeleton 66 2009 156 165
-
(2009)
Cell Motil. Cytoskeleton
, vol.66
, pp. 156-165
-
-
Bosgraaf, L.1
Van Haastert, P.J.M.2
Bretschneider, T.3
-
8
-
-
33745957981
-
AceTree: A tool for visual analysis of Caenorhabditis elegans embryogenesis
-
T. Boyle, Z. Bao, J.I. Murray, C.L. Araya, and R.H. Waterston AceTree: A tool for visual analysis of Caenorhabditis elegans embryogenesis BMC Bioinformatics 7 2006 275
-
(2006)
BMC Bioinformatics
, vol.7
, pp. 275
-
-
Boyle, T.1
Bao, Z.2
Murray, J.I.3
Araya, C.L.4
Waterston, R.H.5
-
9
-
-
0037958748
-
ALES: Cell lineage analysis and mapping of developmental events
-
DOI 10.1093/bioinformatics/btg087
-
V. Braun, R.B.R. Azevedo, M. Gumbel, P.M. Agapow, A.M. Leroi, and H.P. Meinzer ALES: Cell lineage analysis and mapping of developmental events Bioinformatics 19 2003 851 858 (Pubitemid 36582401)
-
(2003)
Bioinformatics
, vol.19
, Issue.7
, pp. 851-858
-
-
Braun, V.1
Azevedo, R.B.R.2
Gumbel, M.3
Agapow, P.-M.4
Leroi, A.M.5
Meinzer, H.-P.6
-
10
-
-
33845792555
-
CellProfiler: Image analysis software for identifying and quantifying cell phenotypes
-
A.E. Carpenter, T.R. Jones, M.R. Lamprecht, C. Clarke, I.H. Kang, O. Friman, D.A. Guertin, J.H. Chang, R.A. Lindquist, J. Moffat, P. Golland, and D.M. Sabatini CellProfiler: Image analysis software for identifying and quantifying cell phenotypes Genome Biol. 7 2006 R100
-
(2006)
Genome Biol.
, vol.7
, pp. 100
-
-
Carpenter, A.E.1
Jones, T.R.2
Lamprecht, M.R.3
Clarke, C.4
Kang, I.H.5
Friman, O.6
Guertin, D.A.7
Chang, J.H.8
Lindquist, R.A.9
Moffat, J.10
Golland, P.11
Sabatini, D.M.12
-
11
-
-
24144437239
-
Tracking single particles: A user-friendly quantitative evaluation
-
DOI 10.1088/1478-3967/2/1/008
-
B.C. Carter, G.T. Shubeita, and S.P. Gross Tracking single particles: A user-friendly quantitative evaluation Phys. Biol. 2 2005 60 72 (Pubitemid 41238219)
-
(2005)
Physical Biology
, vol.2
, Issue.1
, pp. 60-72
-
-
Carter, B.C.1
Shubeita, G.T.2
Gross, S.P.3
-
12
-
-
0034817343
-
Quantitative comparison of algorithms for tracking single fluorescent particles
-
M.K. Cheezum, W.F. Walker, and W.H. Guilford Quantitative comparison of algorithms for tracking single fluorescent particles Biophys. J. 81 2001 2378 2388 (Pubitemid 32917184)
-
(2001)
Biophysical Journal
, vol.81
, Issue.4
, pp. 2378-2388
-
-
Cheezum, M.K.1
Walker, W.F.2
Guilford, W.H.3
-
14
-
-
37249045995
-
Computational processing and analysis of dynamic fluorescence image data
-
J.F. Dorn, G. Danuser, and G. Yang Computational processing and analysis of dynamic fluorescence image data Methods Cell Biol. 85 2008 497 538
-
(2008)
Methods Cell Biol.
, vol.85
, pp. 497-538
-
-
Dorn, J.F.1
Danuser, G.2
Yang, G.3
-
15
-
-
77749279421
-
Advanced level-set-based cell tracking in time-lapse fluorescence microscopy
-
O. Dzyubachyk, W.A. van Cappellen, J. Essers, W.J. Niessen, and E. Meijering Advanced level-set-based cell tracking in time-lapse fluorescence microscopy IEEE Trans. Med. Imaging 29 2010 852 867
-
(2010)
IEEE Trans. Med. Imaging
, vol.29
, pp. 852-867
-
-
Dzyubachyk, O.1
Van Cappellen, W.A.2
Essers, J.3
Niessen, W.J.4
Meijering, E.5
-
16
-
-
77957225889
-
Automated analysis of time-lapse fluorescence microscopy images: From live cell images to intracellular foci
-
O. Dzyubachyk, J. Essers, C. Baldeyron, W.A. van Cappellen, A. Inagaki, W.J. Niessen, and E. Meijering Automated analysis of time-lapse fluorescence microscopy images: From live cell images to intracellular foci Bioinformatics 26 2010 2424 2430
-
(2010)
Bioinformatics
, vol.26
, pp. 2424-2430
-
-
Dzyubachyk, O.1
Essers, J.2
Baldeyron, C.3
Van Cappellen, W.A.4
Inagaki, A.5
Niessen, W.J.6
Meijering, E.7
-
17
-
-
33645963133
-
Multiple particle tracking in 3-D+t microscopy: Method and application to the tracking of endocytosed quantum dots
-
A. Genovesio, T. Liedl, V. Emiliani, W.J. Parak, M. Coppey-Moisan, and J.C. Olivo-Marin Multiple particle tracking in 3-D+t microscopy: Method and application to the tracking of endocytosed quantum dots IEEE Trans. Image Process. 15 2006 1062 1070
-
(2006)
IEEE Trans. Image Process.
, vol.15
, pp. 1062-1070
-
-
Genovesio, A.1
Liedl, T.2
Emiliani, V.3
Parak, W.J.4
Coppey-Moisan, M.5
Olivo-Marin, J.C.6
-
18
-
-
62549107433
-
Deterministic and probabilistic approaches for tracking virus particles in time-lapse fluorescence microscopy image sequences
-
W.J. Godinez, M. Lampe, S. Wörz, B. Müller, R. Eils, and K. Rohr Deterministic and probabilistic approaches for tracking virus particles in time-lapse fluorescence microscopy image sequences Med. Image Anal. 13 2009 325 342
-
(2009)
Med. Image Anal.
, vol.13
, pp. 325-342
-
-
Godinez, W.J.1
Lampe, M.2
Wörz, S.3
Müller, B.4
Eils, R.5
Rohr, K.6
-
19
-
-
72149084634
-
Computational image analysis of cellular dynamics: A case study based on particle tracking
-
pdb.top65
-
K. Jaqaman, and G. Danuser Computational image analysis of cellular dynamics: A case study based on particle tracking Cold Spring Harb. Protoc. 2009 2009 pdb.top65
-
(2009)
Cold Spring Harb. Protoc.
, vol.2009
-
-
Jaqaman, K.1
Danuser, G.2
-
20
-
-
48449087576
-
Robust single-particle tracking in live-cell time-lapse sequences
-
K. Jaqaman, D. Loerke, M. Mettlen, H. Kuwata, S. Grinstein, S.L. Schmid, and G. Danuser Robust single-particle tracking in live-cell time-lapse sequences Nat. Methods 5 2008 695 702
-
(2008)
Nat. Methods
, vol.5
, pp. 695-702
-
-
Jaqaman, K.1
Loerke, D.2
Mettlen, M.3
Kuwata, H.4
Grinstein, S.5
Schmid, S.L.6
Danuser, G.7
-
21
-
-
73849143622
-
Multiple nuclei tracking using integer programming for quantitative cancer cell cycle analysis
-
F. Li, X. Zhou, J. Ma, and S.T.C. Wong Multiple nuclei tracking using integer programming for quantitative cancer cell cycle analysis IEEE Trans. Med. Imaging 29 2010 96 105
-
(2010)
IEEE Trans. Med. Imaging
, vol.29
, pp. 96-105
-
-
Li, F.1
Zhou, X.2
Ma, J.3
Wong, S.T.C.4
-
22
-
-
77956340867
-
Analysis of microtubule dynamic instability using a plus-end growth marker
-
A. Matov, K. Applegate, P. Kumar, C. Thoma, W. Krek, G. Danuser, and T. Wittmann Analysis of microtubule dynamic instability using a plus-end growth marker Nat. Methods 7 2010 761 768
-
(2010)
Nat. Methods
, vol.7
, pp. 761-768
-
-
Matov, A.1
Applegate, K.2
Kumar, P.3
Thoma, C.4
Krek, W.5
Danuser, G.6
Wittmann, T.7
-
24
-
-
84882552860
-
Time-lapse imaging
-
Q. Wu, F.A. Merchant, K.R. Castleman, Academic Press Burlington, MA 401-440 Chapter 15
-
E. Meijering, I. Smal, O. Dzyubachyk, and J.C. Olivo-Marin Time-lapse imaging Q. Wu, F.A. Merchant, K.R. Castleman, Microscope Image Processing 2008 Academic Press Burlington, MA 401 440 pp. 401-440, Chapter 15
-
(2008)
Microscope Image Processing
, pp. 401-440
-
-
Meijering, E.1
Smal, I.2
Dzyubachyk, O.3
Olivo-Marin, J.C.4
-
26
-
-
68949210545
-
Tracking cells in life cell imaging videos using topological alignments
-
A. Mosig, S. Jäger, C. Wang, S. Nath, I. Ersoy, K.P. Palaniappan, and S.S. Chen Tracking cells in life cell imaging videos using topological alignments Algorithms Mol. Biol. 4 2009 10
-
(2009)
Algorithms Mol. Biol.
, vol.4
, pp. 10
-
-
Mosig, A.1
Jäger, S.2
Wang, C.3
Nath, S.4
Ersoy, I.5
Palaniappan, K.P.6
Chen, S.S.7
-
27
-
-
34347266577
-
The lineaging of fluorescently-labeled Caenorhabditis elegans embryos with StarryNite and AceTree
-
J.I. Murray, Z. Bao, T.J. Boyle, and R.H. Waterston The lineaging of fluorescently-labeled Caenorhabditis elegans embryos with StarryNite and AceTree Nat. Protoc. 1 2006 1468 1476
-
(2006)
Nat. Protoc.
, vol.1
, pp. 1468-1476
-
-
Murray, J.I.1
Bao, Z.2
Boyle, T.J.3
Waterston, R.H.4
-
28
-
-
50549104043
-
Bioimage informatics: A new area of engineering biology
-
H. Peng Bioimage informatics: A new area of engineering biology Bioinformatics 24 2008 1827 1836
-
(2008)
Bioinformatics
, vol.24
, pp. 1827-1836
-
-
Peng, H.1
-
29
-
-
34548515317
-
Comparison of quantitative methods for cell-shape analysis
-
DOI 10.1111/j.1365-2818.2007.01799.x
-
Z. Pincus, and J.A. Theriot Comparison of quantitative methods for cell-shape analysis J. Microsc. 227 2007 140 156 (Pubitemid 47372310)
-
(2007)
Journal of Microscopy
, vol.227
, Issue.2
, pp. 140-156
-
-
Pincus, Z.1
Theriot, J.A.2
-
30
-
-
0025997180
-
Single particle tracking: Analysis of diffusion and flow in two-dimensional systems
-
H. Qian, M.P. Sheetz, and E.L. Elson Single particle tracking: Analysis of diffusion and flow in two-dimensional systems Biophys. J. 60 1991 910 921
-
(1991)
Biophys. J.
, vol.60
, pp. 910-921
-
-
Qian, H.1
Sheetz, M.P.2
Elson, E.L.3
-
31
-
-
77955632064
-
Characterization of biological processes through automated image analysis
-
J. Rittscher Characterization of biological processes through automated image analysis Annu. Rev. Biomed. Eng. 12 2010 315 344
-
(2010)
Annu. Rev. Biomed. Eng.
, vol.12
, pp. 315-344
-
-
Rittscher, J.1
-
32
-
-
77956278407
-
Tracking and quantitative analysis of dynamic movements of cells and particles
-
pdb.top80
-
K. Rohr, W.J. Godinez, N. Harder, S. Wörz, J. Mattes, W. Tvaruskó, and R. Eils Tracking and quantitative analysis of dynamic movements of cells and particles Cold Spring Harb. Protoc. 2010 2010 pdb.top80
-
(2010)
Cold Spring Harb. Protoc.
, vol.2010
-
-
Rohr, K.1
Godinez, W.J.2
Harder, N.3
Wörz, S.4
Mattes, J.5
Tvaruskó, W.6
Eils, R.7
-
33
-
-
47049102271
-
CellTrack: An open-source software for cell tracking and motility analysis
-
DOI 10.1093/bioinformatics/btn247
-
A. Sacan, H. Ferhatosmanoglu, and H. Coskun Cell track: An open-source software for cell tracking and motility analysis Bioinformatics 24 2008 1647 1649 (Pubitemid 351966168)
-
(2008)
Bioinformatics
, vol.24
, Issue.14
, pp. 1647-1649
-
-
Sacan, A.1
Ferhatosmanoglu, H.2
Coskun, H.3
-
34
-
-
26444477373
-
Automatic tracking of individual fluorescence particles: Application to the study of chromosome dynamics
-
DOI 10.1109/TIP.2005.852787
-
D. Sage, F.R. Neumann, F. Hediger, S.M. Gasser, and M. Unser Automatic tracking of individual fluorescence particles: Application to the study of chromosome dynamics IEEE Trans. Image Process. 14 2005 1372 1383 (Pubitemid 41430899)
-
(2005)
IEEE Transactions on Image Processing
, vol.14
, Issue.9
, pp. 1372-1383
-
-
Sage, D.1
Neumann, F.R.2
Hediger, F.3
Gasser, S.M.4
Unser, M.5
-
36
-
-
23044515069
-
Feature point tracking and trajectory analysis for video imaging in cell biology
-
DOI 10.1016/j.jsb.2005.06.002, PII S1047847705001267
-
I.F. Sbalzarini, and P. Koumoutsakos Feature point tracking and trajectory analysis for video imaging in cell biology J. Struct. Biol. 151 2005 182 195 (Pubitemid 41074826)
-
(2005)
Journal of Structural Biology
, vol.151
, Issue.2
, pp. 182-195
-
-
Sbalzarini, I.F.1
Koumoutsakos, P.2
-
37
-
-
33748687772
-
Automatic tracking of biological cells and compartments using particle filters and active contours
-
DOI 10.1016/j.chemolab.2005.07.007, PII S0169743905001693
-
H. Shen, G. Nelson, S. Kennedy, D. Nelson, J. Johnson, D. Spiller, M.R.H. White, and D.B. Kell Automatic tracking of biological cells and compartments using particle filters and active contours Chemometr. Intell. Lab. Syst. 82 2006 276 282 (Pubitemid 44389414)
-
(2006)
Chemometrics and Intelligent Laboratory Systems
, vol.82
, Issue.1-2
, pp. 276-282
-
-
Shen, H.1
Nelson, G.2
Kennedy, S.3
Nelson, D.4
Johnson, J.5
Spiller, D.6
White, M.R.H.7
Kell, D.B.8
-
38
-
-
54249153789
-
Multiple object tracking in molecular bioimaging by Rao-Blackwellized marginal particle filtering
-
I. Smal, E. Meijering, K. Draegestein, N. Galjart, I. Grigoriev, A. Akhmanova, M.E. van Royen, A.B. Houtsmuller, and W. Niessen Multiple object tracking in molecular bioimaging by Rao-Blackwellized marginal particle filtering Med. Image Anal. 12 2008 764 777
-
(2008)
Med. Image Anal.
, vol.12
, pp. 764-777
-
-
Smal, I.1
Meijering, E.2
Draegestein, K.3
Galjart, N.4
Grigoriev, I.5
Akhmanova, A.6
Van Royen, M.E.7
Houtsmuller, A.B.8
Niessen, W.9
-
39
-
-
76249126657
-
Quantitative comparison of spot detection methods in fluorescence microscopy
-
I. Smal, M. Loog, W. Niessen, and E. Meijering Quantitative comparison of spot detection methods in fluorescence microscopy IEEE Trans. Med. Imaging 29 2010 282 301
-
(2010)
IEEE Trans. Med. Imaging
, vol.29
, pp. 282-301
-
-
Smal, I.1
Loog, M.2
Niessen, W.3
Meijering, E.4
-
40
-
-
0029585094
-
The use of computers in understanding how animal cells crawl
-
D.R. Soll The use of computers in understanding how animal cells crawl Int. Rev. Cytol. 163 1995 43 104 (Pubitemid 26013688)
-
(1995)
International Review of Cytology
, vol.163
, pp. 43-104
-
-
Soll, D.R.1
-
44
-
-
33750117605
-
Application of 2D and 3D DIAS to motion analysis of live cells in transmission and confocal microscopy imaging
-
D. Wessels, S. Kuhl, and D.R. Soll Application of 2D and 3D DIAS to motion analysis of live cells in transmission and confocal microscopy imaging Methods Mol. Biol. 346 2006 261 279
-
(2006)
Methods Mol. Biol.
, vol.346
, pp. 261-279
-
-
Wessels, D.1
Kuhl, S.2
Soll, D.R.3
-
45
-
-
78149276175
-
Tools for analyzing cell shape changes during chemotaxis
-
Y. Xiong, and P.A. Iglesias Tools for analyzing cell shape changes during chemotaxis Integr. Biol. 2 2010 561 567
-
(2010)
Integr. Biol.
, vol.2
, pp. 561-567
-
-
Xiong, Y.1
Iglesias, P.A.2
-
46
-
-
85032751072
-
On the digital trail of mobile cells
-
C. Zimmer, B. Zhang, A. Dufour, A. Thébaud, S. Berlemont, V. Meas-Yedid, and J.C. Olivo-Marin On the digital trail of mobile cells IEEE Signal Process. Mag. 23 2006 54 62
-
(2006)
IEEE Signal Process. Mag.
, vol.23
, pp. 54-62
-
-
Zimmer, C.1
Zhang, B.2
Dufour, A.3
Thébaud, A.4
Berlemont, S.5
Meas-Yedid, V.6
Olivo-Marin, J.C.7
|