메뉴 건너뛰기




Volumn 15, Issue 1, 2014, Pages

Improving the accuracy of expression data analysis in time course experiments using resampling

Author keywords

ARSER; Biological replicates; Circadian rhythms; Gene expression data; HAYSTACK; Resampling

Indexed keywords

BIOINFORMATICS; BUDGET CONTROL; DATA HANDLING; GENE EXPRESSION; INFORMATION ANALYSIS; TIME SERIES;

EID: 84964693495     PISSN: None     EISSN: 14712105     Source Type: Journal    
DOI: 10.1186/s12859-014-0352-8     Document Type: Article
Times cited : (4)

References (21)
  • 1
    • 0036900895 scopus 로고    scopus 로고
    • Fundamentals of experimental design for cDNA microarrays
    • Churchill GA: Fundamentals of experimental design for cDNA microarrays. Nat Genet 2002, 32:490-495.
    • (2002) Nat Genet , vol.32 , pp. 490-495
    • Churchill, G.A.1
  • 2
    • 0033747889 scopus 로고    scopus 로고
    • Generation of patterns from gene expression data by assigning confidence to differentially expressed genes
    • Manduchi E, Grant GR, McKenzie SE, Overton GC, Surrey S, Stoeckert CJ Jr: Generation of patterns from gene expression data by assigning confidence to differentially expressed genes. Bioinformatics 2000, 16(8):685-698.
    • (2000) Bioinformatics , vol.16 , Issue.8 , pp. 685-698
    • Manduchi, E.1    Grant, G.R.2    McKenzie, S.E.3    Overton, G.C.4    Surrey, S.5    Stoeckert, C.J.6
  • 3
    • 0034730124 scopus 로고    scopus 로고
    • Importance of replication in microarray gene expression studies: statistical methods and evidence from repetitive cDNA hybridizations
    • Lee M-LT, Kuo FC, Whitmore G, Sklar J: Importance of replication in microarray gene expression studies: statistical methods and evidence from repetitive cDNA hybridizations. Proc Natl Acad Sci 2000, 97(18):9834-9839.
    • (2000) Proc Natl Acad Sci , vol.97 , Issue.18 , pp. 9834-9839
    • Lee, M.-L.T.1    Kuo, F.C.2    Whitmore, G.3    Sklar, J.4
  • 4
    • 0034927555 scopus 로고    scopus 로고
    • Analysis of variance for gene expression microarray data
    • Kerr MK, Martin M, Churchill GA: Analysis of variance for gene expression microarray data. J Comput Biol 2000, 7(6):819-837.
    • (2000) J Comput Biol , vol.7 , Issue.6 , pp. 819-837
    • Kerr, M.K.1    Martin, M.2    Churchill, G.A.3
  • 5
    • 0035235227 scopus 로고    scopus 로고
    • Sleep-wake as a biological rhythm
    • Lavie P: Sleep-wake as a biological rhythm. Annu Rev Psychol 2001, 52(1):277-303.
    • (2001) Annu Rev Psychol , vol.52 , Issue.1 , pp. 277-303
    • Lavie, P.1
  • 6
    • 0000879962 scopus 로고
    • Endogenous rhythm in opening and odor of flowers of Cestrum nocturnum
    • Overland L: Endogenous rhythm in opening and odor of flowers of Cestrum nocturnum. Am J Bot 1960, 47(5):378-382.
    • (1960) Am J Bot , vol.47 , Issue.5 , pp. 378-382
    • Overland, L.1
  • 7
    • 33745456764 scopus 로고    scopus 로고
    • Plant circadian rhythms
    • McClung CR: Plant circadian rhythms. The Plant Cell 2006, 18(4):792-803.
    • (2006) The Plant Cell , vol.18 , Issue.4 , pp. 792-803
    • McClung, C.R.1
  • 8
    • 77955983063 scopus 로고    scopus 로고
    • Circadian control of global gene expression patterns
    • Doherty C, Kay S: Circadian control of global gene expression patterns. Annu Rev Genet 2010, 44(1):419-444.
    • (2010) Annu Rev Genet , vol.44 , Issue.1 , pp. 419-444
    • Doherty, C.1    Kay, S.2
  • 10
    • 66449087281 scopus 로고    scopus 로고
    • The circadian system in higher plants
    • Harmer SL: The circadian system in higher plants. Annu Rev Plant Biol 2009, 60:357-377.
    • (2009) Annu Rev Plant Biol , vol.60 , pp. 357-377
    • Harmer, S.L.1
  • 13
    • 77954203032 scopus 로고    scopus 로고
    • Analyzing circadian expression data by harmonic regression based on autoregressive spectral estimation
    • Yang R, Su Z: Analyzing circadian expression data by harmonic regression based on autoregressive spectral estimation. Bioinformatics 2010, 26(12):i168-i174.
    • (2010) Bioinformatics , vol.26 , Issue.12 , pp. i168-i174
    • Yang, R.1    Su, Z.2
  • 15
    • 84901507275 scopus 로고    scopus 로고
    • Strengths and limitations of period estimation methods for circadian data
    • Zielinski T, Moore AM, Troup E, Halliday KJ, Millar AJ: Strengths and limitations of period estimation methods for circadian data. PLoS One 2014, 9(5):e96462.
    • (2014) PLoS One , vol.9 , Issue.5
    • Zielinski, T.1    Moore, A.M.2    Troup, E.3    Halliday, K.J.4    Millar, A.J.5
  • 16
    • 84902553596 scopus 로고    scopus 로고
    • Online period estimation and determination of rhythmicity in circadian data, using the BioDare data infrastructure
    • Moore A, Zielinski T, Millar AJ: Online period estimation and determination of rhythmicity in circadian data, using the BioDare data infrastructure. Methods Mol Biol 2014, 1158:13-44.
    • (2014) Methods Mol Biol , vol.1158 , pp. 13-44
    • Moore, A.1    Zielinski, T.2    Millar, A.J.3
  • 17
    • 34247622366 scopus 로고    scopus 로고
    • Synchronization-induced rhythmicity of circadian oscillators in the suprachiasmatic nucleus
    • Bernard S, Gonze D, Cajavec B, Herzel H, Kramer A: Synchronization-induced rhythmicity of circadian oscillators in the suprachiasmatic nucleus. PLoS Comput Biol 2007, 3(4):e68.
    • (2007) PLoS Comput Biol , vol.3 , Issue.4
    • Bernard, S.1    Gonze, D.2    Cajavec, B.3    Herzel, H.4    Kramer, A.5
  • 18
    • 0037795575 scopus 로고    scopus 로고
    • Toward a detailed computational model for the mammalian circadian clock
    • Leloup JC, Goldbeter A: Toward a detailed computational model for the mammalian circadian clock. Proc Natl Acad Sci U S A 2003, 100(12):7051-7056.
    • (2003) Proc Natl Acad Sci U S A , vol.100 , Issue.12 , pp. 7051-7056
    • Leloup, J.C.1    Goldbeter, A.2


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.