메뉴 건너뛰기




Volumn 1158, Issue , 2014, Pages 13-44

Online period estimation and determination of rhythmicity in circadian data, using the BioDare data infrastructure

Author keywords

Circadian clock; Data repository; Data sharing; Period estimation

Indexed keywords

ANALYTIC METHOD; ARTICLE; CHRONOBIOLOGY; CIRCADIAN RHYTHM; COMPUTER PROGRAM; DATA PROCESSING; INTERNET; ONLINE SYSTEM; PERIOD ANALYSIS; PRIORITY JOURNAL; TIME SERIES ANALYSIS; WEB BROWSER; BIOLOGICAL MODEL; DATA MINING; FACTUAL DATABASE; PHYSIOLOGY;

EID: 84902553596     PISSN: 10643745     EISSN: None     Source Type: Book Series    
DOI: 10.1007/978-1-4939-0700-7_2     Document Type: Article
Times cited : (57)

References (22)
  • 1
    • 34548496311 scopus 로고    scopus 로고
    • Winding up the cyanobacterial circadian clock
    • Mackey SR, Golden SS (2007) Winding up the cyanobacterial circadian clock. Trends Microbiol 15(9):381–388
    • (2007) Trends Microbiol , vol.15 , Issue.9 , pp. 381-388
    • Mackey, S.R.1    Golden, S.S.2
  • 2
    • 56949083657 scopus 로고    scopus 로고
    • How a cyanobacterium tells time
    • Dong G, Golden SS (2008) How a cyanobacterium tells time. Curr Opin Microbiol 11(6):541–546
    • (2008) Curr Opin Microbiol , vol.11 , Issue.6 , pp. 541-546
    • Dong, G.1    Golden, S.S.2
  • 3
    • 77951897767 scopus 로고    scopus 로고
    • Systems biology of mammalian circadian clocks
    • Ukai H, Ueda HR (2010) Systems biology of mammalian circadian clocks. Ann Rev Physiol 72:579–603
    • (2010) Ann Rev Physiol , vol.72 , pp. 579-603
    • Ukai, H.1    Ueda, H.R.2
  • 4
    • 80052899933 scopus 로고    scopus 로고
    • Genetics of circadian rhythms in mammalian model organisms
    • Lowrey PL, Takahashi JS (2011) Genetics of circadian rhythms in mammalian model organisms. Adv Genet 74:175–229
    • (2011) Adv Genet , vol.74 , pp. 175-229
    • Lowrey, P.L.1    Takahashi, J.S.2
  • 5
    • 84878336478 scopus 로고    scopus 로고
    • (2013) Mathematical modelling of an oscillating gene circuit to unravel the circadian clock network of Arabidopsis thaliana
    • Bujdoso N, Davis SJ (2013) Mathematical modelling of an oscillating gene circuit to unravel the circadian clock network of Arabidopsis thaliana . Frontiers Plant Syst Biol 4:2013.00003
    • (2013) Frontiers Plant Syst Biol , vol.4 , pp. 00003
    • Bujdoso, N.1    Davis, S.J.2
  • 6
    • 0031159538 scopus 로고    scopus 로고
    • Quantitative analysis of Drosophila period gene transcription in living animals
    • Plautz JD, Straume M, Stanewsky R et al (1997) Quantitative analysis of Drosophila period gene transcription in living animals. J Biol Rhythms 12:204–217
    • (1997) J Biol Rhythms , vol.12 , pp. 204-217
    • Plautz, J.D.1    Straume, M.2    Stanewsky, R.3
  • 8
    • 0013779880 scopus 로고
    • The search for rhythmicity in biological time-series
    • Enright JT (1965) The search for rhythmicity in biological time-series. J Theor Biol 8: 426–468
    • (1965) J Theor Biol , vol.8 , pp. 426-468
    • Enright, J.T.1
  • 9
    • 0027483824 scopus 로고
    • Laboratory instrumentation and computing: Comparison of six methods for the determination of the period of circadian rhythms
    • Refi netti R (1992) Laboratory instrumentation and computing: comparison of six methods for the determination of the period of circadian rhythms. Physiol Behav 54:869–875
    • (1992) Physiol Behav , vol.54 , pp. 869-875
    • Refi Netti, R.1
  • 10
    • 84884171759 scopus 로고    scopus 로고
    • Network balance via CRY signalling controls the Arabidopsis circadian clock over ambient temperatures
    • Gould PD et al (2013) Network balance via CRY signalling controls the Arabidopsis circadian clock over ambient temperatures. Mol Syst Biol 9:650
    • (2013) Mol Syst Biol , vol.9
    • Gould, P.D.1
  • 11
    • 66249120358 scopus 로고    scopus 로고
    • Delayed fl uorescence as a universal tool for the measurement of circadian rhythms in higher plants
    • Gould PD, Diaz P, Hogben C et al (2009) Delayed fl uorescence as a universal tool for the measurement of circadian rhythms in higher plants. Plant J 58:893–901
    • (2009) Plant J , vol.58 , pp. 893-901
    • Gould, P.D.1    Diaz, P.2    Hogben, C.3
  • 12
    • 84927550183 scopus 로고    scopus 로고
    • http://hallidaylab.bio.ed.ac.uk/ROBuST.html
  • 14
    • 16844385530 scopus 로고    scopus 로고
    • Circadian genetics in the model higher plant, Arabidopsis thaliana
    • Southern MM, Millar AJ (2005) Circadian genetics in the model higher plant, Arabidopsis thaliana. Methods Enzymol 393:23–35
    • (2005) Methods Enzymol , vol.393 , pp. 23-35
    • Southern, M.M.1    Millar, A.J.2
  • 15
    • 42549101854 scopus 로고    scopus 로고
    • Data capture in bioinformatics: Requirements and experiences with Pedro
    • Jameson D, Garwood K et al (2008) Data capture in bioinformatics: requirements and experiences with Pedro. BMC Bioinformatics 9:183
    • (2008) BMC Bioinformatics , vol.9
    • Jameson, D.1    Garwood, K.2
  • 16
    • 20444367685 scopus 로고    scopus 로고
    • Natural allelic variation in the temperature compensation mechanisms of the Arabidopsis thaliana circadian clock
    • Edwards KD, Lynn JR, Gyula P, Nagy F, Millar AJ (2005) Natural allelic variation in the temperature compensation mechanisms of the Arabidopsis thaliana circadian clock. Genetics 170:387–400
    • (2005) Genetics , vol.170 , pp. 387-400
    • Edwards, K.D.1    Lynn, J.R.2    Gyula, P.3    Nagy, F.4    Millar, A.J.5
  • 17
    • 33846818872 scopus 로고    scopus 로고
    • Detection and resolution of genetic loci affecting circadian period in Brassica oleracea
    • Salathia N, Lynn JR, Millar AJ, King GJ (2007) Detection and resolution of genetic loci affecting circadian period in Brassica oleracea . Theor Appl Genet 114:683–692
    • (2007) Theor Appl Genet , vol.114 , pp. 683-692
    • Salathia, N.1    Lynn, J.R.2    Millar, A.J.3    King, G.J.4
  • 18
    • 0034619666 scopus 로고    scopus 로고
    • The ELF3 zeitnehmer regulates light signalling to the circadian clock
    • McWatters HG, Bastow RM, Hall A, Millar AJ (2000) The ELF3 zeitnehmer regulates light signalling to the circadian clock. Nature 408: 716–720
    • (2000) Nature , vol.408 , pp. 716-720
    • McWatters, H.G.1    Bastow, R.M.2    Hall, A.3    Millar, A.J.4
  • 19
    • 0018103635 scopus 로고
    • The chi square periodogram: Its utility for analysis of circadian rhythms
    • Sokolove PG, Bushell WN (1978) The chi square periodogram: its utility for analysis of circadian rhythms. J Theor Biol 72: 131–160
    • (1978) J Theor Biol , vol.72 , pp. 131-160
    • Sokolove, P.G.1    Bushell, W.N.2
  • 20
    • 84927562925 scopus 로고    scopus 로고
    • Inference on periodicity of circadian time series
    • Costa MJ et al (2013) Inference on periodicity of circadian time series. Biostatistics 2013: 1–15
    • (2013) Biostatistics , vol.2013 , pp. 1-15
    • Costa, M.J.1
  • 21
    • 84901507275 scopus 로고    scopus 로고
    • Strengths and limitations of period estimation methods for circadian data
    • in press
    • Zielinski T, Moore A et al (2014) Strengths and limitations of period estimation methods for circadian data. PLoS ONE (in press)
    • (2014) Plos ONE
    • Zielinski, T.1    Moore, A.2
  • 22
    • 0028956524 scopus 로고
    • The regulation of circadian period by phototransduction pathways in Arabidopsis
    • Millar AJ, Straume M, Chory J, Chua N-H, Kay SA (1995) The regulation of circadian period by phototransduction pathways in Arabidopsis. Science 267:1163–1167
    • (1995) Science , vol.267 , pp. 1163-1167
    • Millar, A.J.1    Straume, M.2    Chory, J.3    Chua, N.-H.4    Kay, S.A.5


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.