The Urinary Microbiome Differs Significantly between Patients with Chronic Prostatitis/Chronic Pelvic Pain Syndrome and Controls as Well as between Patients with Different Clinical Phenotypes

Urology

Volumn 92, Issue , 2016, Pages 26-32

  Shoskes, Daniel A ^a   Altemus, Jessica ^a   Polackwich, Alan S ^a   Tucky, Barbara ^a   Wang, Hannah ^a,b   Eng, Charis ^a,b,c  

^a LERNER RESEARCH INSTITUTE   (United States)

^b CLEVELAND CLINIC LERNER COLLEGE OF MEDICINE   (United States)

^c CASE WESTERN RESERVE UNIVERSITY SCHOOL OF MEDICINE   (United States)

Author keywords

[No Author keywords available]

Indexed keywords

DNA 16S;

ADULT; AGED; ARTICLE; BACILLI; CHRONIC PROSTATITIS; CLINICAL FEATURE; CLOSTRIDIA; CONTROLLED STUDY; DISEASE SEVERITY; HUMAN; MALE; MICROBIOME; NONHUMAN; PELVIS PAIN SYNDROME; PHENOTYPE; PHYLOGENY; PRIORITY JOURNAL; SEQUENCE ANALYSIS; URINALYSIS; COMPARATIVE STUDY; GENETICS; MICROBIOLOGY; MICROFLORA; MIDDLE AGED; PROSTATITIS; URINE; YOUNG ADULT;

ADULT; AGED; HUMANS; MALE; MICROBIOTA; MIDDLE AGED; PHENOTYPE; PROSTATITIS; URINE; YOUNG ADULT;

EID: 84964341298     PISSN: 00904295     EISSN: 15279995     Source Type: Journal    
DOI: 10.1016/j.urology.2016.02.043     Document Type: Article

References (30)

1. A. Krsmanovic, D.A. Tripp, J.C. Nickel, and et al. Psychosocial mechanisms of the pain and quality of life relationship for chronic prostatitis/chronic pelvic pain syndrome (CP/CPPS) Can Urol Assoc J 8 2014 403 408
2. D.A. Shoskes, and J.C. Nickel Classification and treatment of men with chronic prostatitis/chronic pelvic pain syndrome using the UPOINT system World J Urol 31 2013 755 760
3. B.C. Taylor, S. Noorbaloochi, M. McNaughton-Collins, and et al. Excessive antibiotic use in men with prostatitis Am J Med 121 2008 444 449
4. D.A. Shoskes, and A.R. Shahed Detection of bacterial signal by 16S rRNA polymerase chain reaction in expressed prostatic secretions predicts response to antibiotic therapy in men with chronic pelvic pain syndrome Tech Urol 6 2000 240 242
5. J.C. Nickel, A. Stephens, J.R. Landis, and et al. Search for microorganisms in men with urologic chronic pelvic pain syndrome: a culture-independent analysis in the MAPP research network J Urol 194 2015 127 135
6. H. Siddiqui, K. Lagesen, A.J. Nederbragt, S.L. Jeansson, and K.S. Jakobsen Alterations of microbiota in urine from women with interstitial cystitis BMC Microbiol 12 2012 205 (published online)
7. J.N. Krieger, L.J. Nyberg, and J.C. Nickel NIH consensus definition and classification of prostatitis JAMA 282 1999 236 237
8. M.S. Litwin, M. McNaughton-Collins, F.J.J. Fowler, and et al. The National Institutes of Health chronic prostatitis symptom index: development and validation of a new outcome measure. Chronic Prostatitis Collaborative Research Network J Urol 162 1999 369 375
9. A. Klindworth, E. Pruesse, T. Schweer, and et al. Evaluation of general 16S ribosomal RNA gene PCR primers for classical and next-generation sequencing-based diversity studies Nucleic Acids Res 41 2013 e1 open access, no final page number
10. W.R. Pearson, T. Wood, Zhang Z., and W. Miller Comparison of DNA sequences with protein sequences Genomics 46 1997 24 36
11. T. Magoč, and S.L. Salzberg FLASH: fast length adjustment of short reads to improve genome assemblies Bioinformatics 27 2011 2957 2963
12. J.G. Caporaso, J. Kuczynski, J. Stombaugh, and et al. QIIME allows analysis of high-throughput community sequencing data Nat Methods 7 2010 335 336
13. N.A. Bokulich, S. Subramanian, J.J. Faith, and et al. Quality-filtering vastly improves diversity estimates from Illumina amplicon sequencing Nat Methods 10 2013 57 59
14. D. McDonald, M.N. Price, J. Goodrich, and et al. An improved Greengenes taxonomy with explicit ranks for ecological and evolutionary analyses of bacteria and archaea ISME J 6 2012 610 618
15. R.C. Edgar Search and clustering orders of magnitude faster than BLAST Bioinformatics 26 2010 2460 2461
16. Y. Vázquez-Baeza, M. Pirrung, A. Gonzalez, and R. Knight EMPeror: a tool for visualizing high-throughput microbial community data Gigascience 2 2013 16
17. J. Goecks, A. Nekrutenko, J. Taylor, and T. Galaxy Galaxy: a comprehensive approach for supporting accessible, reproducible, and transparent computational research in the life sciences Genome Biol 11 2010 R86
18. N. Segata, J. Izard, L. Waldron, and et al. Metagenomic biomarker discovery and explanation Genome Biol 12 2011 R60
19. M.G. Langille, J. Zaneveld, J.G. Caporaso, and et al. Predictive functional profiling of microbial communities using 16S rRNA marker gene sequences Nat Biotechnol 31 2013 814 821
20. D.H. Parks, G.W. Tyson, P. Hugenholtz, and R.G. Beiko STAMP: statistical analysis of taxonomic and functional profiles Bioinformatics 30 2014 3123 3124
21. A.J. Schaeffer, J.S. Knauss, J.R. Landis, and et al. Leukocyte and bacterial counts do not correlate with severity of symptoms in men with chronic prostatitis: the National Institutes of Health Chronic Prostatitis Cohort Study J Urol 168 2002 1048 1053
22. M.A. Tanner, D. Shoskes, A. Shahed, and N.R. Pace Prevalence of corynebacterial 16S rRNA sequences in patients with bacterial and "nonbacterial" prostatitis J Clin Microbiol 37 1999 1863 1870
23. Xiao J., Ren L., H. Lv, and et al. Atypical microorganisms in expressed prostatic secretion from patients with chronic prostatitis/chronic pelvic pain syndrome: microbiological results from a case-control study Urol Int 91 2013 410 416
24. K.J. Thomas-White, E.E. Hilt, C. Fok, and et al. Incontinence medication response relates to the female urinary microbiota Int Urogynecol J 2015 ePub
25. V. Magri, A. Restelli, E. Marras, and G. Perletti A severely symptomatic case of anaerobic chronic bacterial prostatitis successfully resolved with moxifloxacin therapy Anaerobe 16 2010 206 209
26. G.G. Anderson, J.J. Palermo, J.D. Schilling, R. Roth, J. Heuser, and S.J. Hultgren Intracellular bacterial biofilm-like pods in urinary tract infections Science 301 2003 105 107
27. P. Dürre Physiology and Sporulation in Clostridium Microbiol Spectr 2 2014 1010 1012
28. V. Martinez-Jéhanne, C. Pichon, L. du Merle, and et al. Role of the vpe carbohydrate permease in Escherichia coli urovirulence and fitness in vivo Infect Immun 80 2012 2655 2666
29. M.K. Samplaski, Li J., and D.A. Shoskes Clustering of UPOINT domains and subdomains in men with chronic prostatitis/chronic pelvic pain syndrome and contribution to symptom severity J Urol 188 2012 1788 1793
30. N. Joshi, N.F. Bissada, D. Bodner, and et al. Association between periodontal disease and prostate-specific antigen levels in chronic prostatitis patients J Periodontol 81 2010 864 869