Porewater CO2–carbonic acid system chemistry in permeable carbonate reef sands

Marine Chemistry

Volumn 185, Issue , 2016, Pages 48-64

  Drupp, Patrick S ^a   De Carlo, Eric Heinen ^a   Mackenzie, Fred T ^a  

^a UNIVERSITY OF HAWAII   (United States)

Author keywords

Carbonate dissolution; Coral reefs; Ocean acidification; Permeable sediments

Indexed keywords

ARAGONITE; BIOGEOCHEMISTRY; CALCITE; CALCIUM CARBONATE; CARBON DIOXIDE; CARBONATE SEDIMENT; CARBONATE SYSTEM; CHEMICAL COMPOUND; CORAL REEF; DISSOLUTION; DISSOLVED INORGANIC CARBON; MAGNESITE; OCEAN ACIDIFICATION; OXIC CONDITIONS; POREWATER; RESPIRATION; SEAWATER; SEDIMENT CHEMISTRY; SEDIMENT-WATER INTERFACE; SILICICLASTIC DEPOSIT; WATER CHEMISTRY;

ALA WAI CANAL; HAWAII [UNITED STATES]; HAWAIIAN ISLANDS; HONOLULU; KANEOHE BAY; OAHU;

ANTHOZOA;

EID: 84964262301     PISSN: 03044203     EISSN: None     Source Type: Journal    
DOI: 10.1016/j.marchem.2016.04.004     Document Type: Article

References (105)

1. Agegian, C.R., The Biogeochemical Ecology of Porolithon Gardineri (Foslie). 1985, University of Hawaii.
2. Agegian, C.R., Mackenzie, F.T., Calcareous organisms and sediment mineralogy on a mid-depth bank in the Hawaiian archipelago. Pac. Sci. 43 (1989), 56–66.
3. Aller, R.C., Rude, P.D., Complete oxidation of solid phase sulfides by manganese and bacteria in anoxic marine sediments. Geochim. Cosmochim. Acta 52 (1988), 751–765.
4. Andersson, A.J., A fundamental paradigm for coral reef carbonate sediment dissolution. Front. Mar. Sci. 2 (2015), 1–8, 10.3389/fmars.2015.00052.
5. Andersson, A.J., Gledhill, D., Ocean acidification and coral reefs: effects on breakdown, dissolution, and net ecosystem calcification. Ann. Rev. Mar. Sci. 5 (2013), 321–348, 10.1146/annurev-marine-121211-172241.
6. 2 world of the Anthropocene. Am. J. Sci. 305 (2005), 875–918.
7. 2 –carbonic acid–carbonate sediment system of the Anthropocene. Glob. Biogeochem. Cycles, 20(GB1S92), 2006, 10.1029/2005GB002506.
8. 3 from a subtropical calcifying community due to seawater acidification: mesocosm-scale experimental evidence. Biogeosciences 6 (2009), 1811–1823, 10.5194/bg-6-1811-2009.
9. Andersson, A.J., Yeakel, K.L., Bates, N.R., de Putron, S.J., Partial offsets in ocean acidification from changing coral reef biogeochemistry. Nat. Clim. Chang. 4 (2013), 56–61, 10.1038/nclimate2050.
10. Ben-Yaakov, S., pH buffering of pore water of recent anoxic marine sediments. Limnol. Oceanogr. 18 (1973), 86–94.
11. Berner, R.A., Early Diagensis: A Theoretical Approach. 1980, Princeton University Press, Princeton, NJ.
12. Berner, R.A., Morse, J.W., Dissolution kinetics of calcium carbonate in sea water; IV, theory of calcite dissolution. Am. J. Sci. 274 (1974), 108–134, 10.2475/ajs.274.2.108.
13. Berner, R.A., Westrich, J.T., Graber, R., Smith, J., C.S, Martens, Inhibition of aragonite precipitation from supersaturated seawater; a laboratory and field study. Am. J. Sci. 278 (1978), 816–837.
14. Bischoff, W.D., Bishop, F.C., Mackenzie, F.T., Biogenically produced magnesian clacite inhomogeneities in chemical and physical-properties comparison with synthetic phases. Am. Mineral. 68 (1983), 1183–1188.
15. Bischoff, W.D., Bertram, M.A., Mackenzie, F.T., Bishop, F.C., Diagenetic stabilization pathways of magnesian calcites. Carbonates Evaporites 8 (1993), 82–89.
16. Boudreau, B.P., Diagenetic Models and their Implementation. 1997.
17. Boudreau, B.P., Huettel, M., Forster, S., Jahnke, R.A., McLachlan, A., Middelburg, J.J., Nielsen, P., Sansone, F.J., Taghon, G., Van Raaphorst, W., Webster, I., Weslawski, J.M., Wiberg, P., Sundby, B., Permeable marine sediments : overturning an old paradigm. EOS Trans. Am. Geophys. Union 82 (2001), 133–140.
18. Bouillon, S., Dehairs, F., Velimirov, B., Abril, G., Borges, A.V., Dynamics of organic and inorganic carbon across contiguous mangrove and seagrass systems (Gazi Bay, Kenya). J. Geophys. Res. Biogeosci. 112 (2007), 1–14, 10.1029/2006JG000325.
19. Breitzke, M., Schulz, H., Zabel, M., (eds.) Physical Properties of Marine Sediments, 2006, Marine Geochemistry. Springer-Verlag, 27–71, 10.1007/3-540-32144-6_2.
20. Briggs, R.A., Ruttenberg, K.C., Glazer, B.T., Ricardo, A.E., Constraining sources of organic matter to tropical coastal sediments: consideration of nontraditional end-members. Aquat. Geochem. 19 (2013), 543–563, 10.1007/s10498-013-9219-2.
21. Brindley, G.W., Brown, G., (eds.) Crystal Structures of Clay Minerals and their X-Ray Identification, 1980, Mineralogical Society, London, England.
22. Burdige, D.J., Geochemistry of Marine Sediments. 2006, Princeton University Press, Princeton, NJ.
23. Burdige, D.J., Zimmerman, R.C., Impact of seagrass density on carbonate dissolution in Bahamian sediments. Limnol. Oceanogr. 47 (2002), 1751–1763.
24. Burdige, D.J., Zimmerman, R.C., Hu, X., Rates of carbonate dissolution in permeable sediments estimated from pore-water profiles: the role of sea grasses. Limnol. Oceanogr. 53 (2008), 549–565, 10.4319/lo.2008.53.2.0549.
25. Burdige, D.J., Hu, X., Zimmerman, R.C., The widespread occurrence of coupled carbonate dissolution/reprecipitation in surface sediments on the Bahamas Bank. Am. J. Sci. 310 (2010), 492–521, 10.2475/06.2010.03.
26. Chave, K., Aspects of the biogeochemistry of magnesium 2. Calcareous sediments and rocks. J. Geol. 62 (1954), 587–599.
27. Cyronak, T., Santos, I.R., Eyre, B.D., Permeable coral reef sediment dissolution driven by elevated pCO2 and pore water advection. Geophys. Res. Lett. 40 (2013), 4876–4881, 10.1002/grl.50948.
28. Cyronak, T., Santos, I.R., Mcmahon, A., Eyre, B.D., Carbon cycling hysteresis in permeable carbonate sands over a diel cycle : implications for ocean acidification. Limnol. Oceanogr. 58 (2013), 131–143, 10.4319/lo.2013.58.1.0131.
29. Cyronak, T., Schulz, K.G., Santos, I.R., Eyre, B.D., Enhanced acidification of global coral reefs driven by regional biogeochemical feedbacks. Geophys. Res. Lett. 41 (2014), 5538–5546, 10.1002/2014GL060849.Received.
30. De Carlo, E.H., Hoover, D.J., Young, C.W., Hoover, R.S., Mackenzie, F.T., Impact of storm runoff from tropical watersheds on coastal water quality and productivity. Appl. Geochem. 22 (2007), 1777–1797, 10.1016/j.apgeochem.2007.03.034.
31. Dickson, A.G., Millero, F.J., A comparison of the equilibrium constants for the dissociation of carbonic acid in seawater media. Deep-Sea Res. 34 (1987), 1733–1743.
32. 2 analysis: a method for the certification of total alkalinity. Mar. Chem. 80 (2003), 185–197, 10.1016/S0304-4203(02)00133-0.
33. 2 measurements. PICES Spec. Publ., 3, 2007.
34. 2 dynamics and air–sea gas exchange in differing tropical reef environments. Aquat. Geochem. 19 (2013), 371–397, 10.1007/s10498-013-9214-7.
35. Eyre, B.D., Andersson, A.J., Cyronak, T., Benthic coral reef calcium carbonate dissolution in an acidifying ocean. Nat. Clim. Chang. 4 (2014), 969–976, 10.1038/nclimate2380.
36. Falter, J.L., Sansone, F.J., Shallow pore water sampling in reef sediments. Coral Reefs 19 (2000), 93–97, 10.1007/s003380050233.
37. Falter, J.L., Sansone, F.J., Hydraulic control of pore water geochemistry within the oxic–suboxic zone of a permeable sediment. Limnol. Oceanogr. 45 (2000), 550–557.
38. Fogaren, K.E., Sansone, F.J., De Carlo, E.H., Porewater temporal variability in a wave-impacted permeable nearshore sediment. Mar. Chem. 149 (2013), 74–84, 10.1016/j.marchem.2012.12.005.
39. Fram, J.P., Pawlak, G.R., Sansone, F.J., Glazer, B.T., Hannides, A.K., Miniature thermistor chain for determining surficial sediment porewater advection. Limnol. Oceanogr. Methods 12 (2014), 155–165, 10.4319/lom.2014.12.155.
40. Gattuso, J.-P., Frankignoulle, M., Wollast, R., Carbon and carbonate metabolism in coastal aquatic ecosystems. Annu. Rev. Ecol. Evol. Syst. 29 (1998), 405–434.
41. Giambelluca, T.W., Nullet, M.A., Schroeder, T.A., Rainfall Atlas of Hawaii. 1986.
42. Ginsburg, R.N., Environmental relationships of grain size and constituent composition in south Florida carbonate sediments. Am. Assoc. Pet. Geol. Bull. 40 (1956), 2384–2427.
43. Goldsmith, J.R., Graf, D.L., Heard, H.C., Lattice constants of the calcium–magnesium carbonates. Am. Mineral. 46 (1961), 453–459.
44. Gordon, D., Examination of methods of particulate organic carbon analysis. Deep-Sea Res. 16 (1969), 661–665.
45. Hamilton, P.J., Singer, J., Waddell, E., Mamala Bay Study, Ocean Current Measurements: A Report to the Mamala Bay Commission, HI. Raleigh, NC. 1995.
46. Hoover, D.J., Mackenzie, F.T., Fluvial fluxes of Water, suspended particulate matter, and nutrients and potential impacts on tropical coastal water biogeochemistry: Oahu, Hawai'i. Aquat. Geochem. 15 (2009), 547–570, 10.1007/s10498-009-9067-2.
47. Huettel, M., Gust, G., Impact of bioroughness on interfacial solute exchange in permeable sediments. Mar. Ecol. Prog. Ser. 89 (1992), 253–267.
48. Huettel, M., Rusch, A., Transport and degradation of phytoplankton in permeable sediment. Limnol. Oceanogr. 45 (2000), 534–549.
49. Huettel, M., Webster, I.T., Porewater flow in permeable sediments. Boudrea, B.P., Jorgensen, B.B., (eds.) The Benthic Boundary Layer: Transport Processes and Biogeochemistry, 2001, Oxford University Press, 144–179.
50. Huettel, M., Ziebis, W., Forster, S., Flow-induced uptake of particulate matter in permeable sediments. Limnol. Oceanogr. 41 (1996), 309–322.
51. Jahnke, R.A., Transport Processes and Organic Matter in Coastal Sediments. Robinson, A.R., Brink, K., (eds.) The Sea The Global Coastal Ocean, vol. 13, 2004, Harvard University Press, Harvard, 163–192.
52. Jahnke, R.A., Richards, M., Nelson, J., Robertson, C., Rao, A., Jahnke, D., Organic matter remineralization and porewater exchange rates in permeable South Atlantic Bight continental shelf sediments. Cont. Shelf Res. 25 (2005), 1433–1452, 10.1016/j.csr.2005.04.002.
53. Janssen, F., Huettel, M., Witte, U., Pore-water advection and solute fluxes in permeable marine sediments (II): benthic respiration at three sandy sites with different permeabilities (German Bight, North Sea). Limnol. Oceanogr. 50 (2005), 779–792, 10.4319/lo.2005.50.3.0779.
54. Kleypas, J.A., Buddemeier, R.W., Archer, D., Gattuso, J.-P., Langdon, C., Opdyke, B.N., Geochemical consequences of increased atmospheric carbon dioxide on coral reefs. Science 284:80-. (1999), 118–120.
55. Klute, A., Dirksen, C., Hydraulic Conductivity and Diffusivity: Laboratory Methods. Klute, A., (eds.) Methods of Soil Analysis, Part 1: Physical and Mineralogical Methods American Society of Agronomy - Soil Science Society of America, 1986, 687–734.
56. Kremling, K., Determination of the Major Constituents. Grasshoff, K., Ehrhardt, M., Kremling, K., Almgren, T., (eds.) Methods of Seawater Analysis, 1983, Verlag Chemie, Weinhelm, 247–268.
57. Krumbein, W.C., Pettijohn, F.J., Manual of Sedimentary Petrography. Appleton-Century-Crofts, New York, 1938.
58. Lavigne, H., Gattuso, J., Seawater Carbonate Chemistry with R. 2011.
59. 2 System Calculations, in: ORNL/CDIAC-105. 1998, Carbon Dioxide Information Analysis Center, Oak Ridge National Laboratory, Oak Ridge, TN.
60. Lowe, R.J., Falter, J.L., Monismith, S.G., Atkinson, M.J., Wave-driven circulation of a coastal reef–lagoon system. J. Phys. Oceanogr. 39 (2009), 873–893, 10.1175/2008JPO3958.1.
61. Lowe, R.J., Falter, J.L., Monismith, S.G., Atkinson, M.J., A numerical study of circulation in a coastal reef–lagoon system. J. Geophys. Res., 114, 2009, C06022, 10.1029/2008JC005081.
62. 2 in gas and seawater at equilibrium. Mar. Chem. 70 (2000), 105–119.
63. Mackenzie, F.T., Andersson, A.J., Biological Control on Diagenesis: Influence of Bacteria and Relevance to Ocean Acidification. Reitner, J., Thiels, V., (eds.) Encyclopedia of Geobiology, 2011, Springer Verlag, Dordrect, The Netherlands.
64. Mackenzie, F.T., Andersson, A.J., The Marine Carbon System and Ocean Acidification during Phanerozoic Time. 2013, Geochemica. ed. European Union of Geochemistry.
65. Mackenzie, F.T., Garrels, R.M., Silica–bicarbonate balance in the oceans and early diagenesis. J. Sediment. Petrol. 36 (1966), 1075–1084.
66. Mackenzie, F.T., Kump, L.R., Reverse weathering, clay mineral formation, and oceanic element cycles (Perspective). Science 270:80-. (1995), 586–587.
67. Mackenzie, F.T., Ristvet, B., Thorstenson, D.C., Lerman, A., Leeper, R.H., Reverse Weathering and Chemical Mass Balance in a Coastal Environment. Martin, J.M., Burton, J.D., Eisma, D., (eds.) River Inputs to Ocean Systems, 1981, UNEP and UNESCO, Switzerland, 152–187.
68. Mackenzie, F.T., Vink, S., Wollast, R., Chou, L., Comparative Biogeochemistry of Marine Saline Lakes. Lerman, A., Imboden, D., Gat, J., (eds.) Physics and Chemistry of Lakes, 1995, Springer-Verlag, Berlin, 265–278.
69. Martin, T.D., Brockhoff, C.A., Creed, J.T., Group, E.M.W., Method 200.7 Determination of Metals and Trace Elements in Water and Wastes by Inductively Coupled Plamsa-Atomic Emission Spectometry. 1994, OH, Cincinnati.
70. 2 exchange between the ocean and atmosphere in a tropical coral reef environment. Aquat. Geochem. 18 (2012), 357–386, 10.1007/s10498-012-9170-7.
71. Mehrbach, C., Culberso, C.H., Hawley, J.E., Pytkowic, R.M., Measurement of apparent dissociation constants of carbonic-acid in seawater at atmospheric pressure. Limnol. Oceanogr. 18 (1973), 897–907.
72. Millero, F.J., Pierrot, D., A chemical equilibrium model for natural waters. Aquat. Geochem. 4 (1998), 153–199.
73. Morse, J.W., The Kinetics of Calcium Carbonate Dissolution and Precipitation. Reeder, R.J., (eds.) Carbonates: Mineralogy and Chemistry Reviews in Mineralogy, 1983, Mineralogical Society of America, 227–264.
74. Morse, J.W., Mackenzie, F.T., Geochemistry of Sedimentary Carbonates. 1990, Elsevier, Amsterdam, The Netherlands.
75. Morse, J., Zullig, J., Bernstein, L., Millero, F.J., Milne, P., Mucci, A., Choppin, G.R., Chemistry of calcium carbonate-rich shallow water sediments in the Bahamas. Am. J. Sci. 285 (1985), 147–185.
76. Morse, J.W., Zullig, J.J., Iverson, R.L., Choppin, G.R., Mucci, A., Millero, F.J., The influence of seagrass beds on carbonate sediments in the Bahamas. Mar. Chem. 22 (1987), 71–83.
77. Morse, J.W., Andersson, A.J., Mackenzie, F.T., Initial responses of carbonate-rich shelf sediments to rising atmospheric pCO2 and “ocean acidification”: role of high Mg-calcites. Geochim. Cosmochim. Acta 70 (2006), 5814–5830, 10.1016/j.gca.2006.08.017.
78. Moulin, E., Jordens, A., Wollast, R., Influence of the Aerobic Bacterial Respiration on the Early Dissolution of Carbonates in Coastal Sediments, in: Progress in Belgian Oceanographic Research. 1985, 13.
79. Pickett, M., Andersson, A.J., Dissolution rates of biogenic carbonates in natural seawater at different pCO2 conditions: a laboratory study. Aquat. Geochem., 2015, 459–485, 10.1007/s10498-015-9261-3.
80. Plummer, L.N., Mackenzie, F.T., Predicting mineral solubility from rate data: application to the dissolution of Magnesian clacite. Am. J. Sci. 274 (1974), 61–83.
81. Precht, E., Huettel, M., Rapid wave-driven advective pore water exchange in a permeable coastal sediment. J. Sea Res. 51 (2004), 93–107, 10.1016/j.seares.2003.07.003.
82. Rao, A.M.F., Polerecky, L., Ionescu, D., Meysman, F.J.R., de Beer, D., The influence of pore-water advection, benthic photosynthesis, and respiration on calcium carbonate dynamics in reef sands. Limnol. Oceanogr. 57 (2012), 809–825.
83. Ringuet, S., Mackenzie, F.T., Controls on nutrient and phytoplankton dynamics during normal flow and storm runoff conditions, southern Kaneohe Bay, Hawaii. Estuaries 28 (2005), 327–337, 10.1007/BF02693916.
84. Ristvet, B., Reverse Weather Reactions within Recent Nearshore Marine Sediments, Kaneohe Bay. 1978, University of Hawaii, Oahu.
85. Sansone, F.J., Andrews, C.C., Buddemeier, R.W., Tribble, G.W., Well-point sampling of reef interstitial water. Coral Reefs 7 (1988), 19–22.
86. Sansone, F.J., Tribble, G.W., Buddemeier, R.W., Andrews, C.C., Time and Space Scales of Anaerobic Diagensis within a Coral Reef Framework. Proc. 6th Int. Coral Reef Symp. Aust., 3, 1988, 367–372.
87. Sansone, F.J., Tribble, G., Andrews, C.C., Chanton, J.P., Anaerobic diagenesis within Recent, Pleistocene, and Eocene marine carbonate frameworks. Sedimentology 37 (1990), 997–1009.
88. Sevadjian, J., McManus, M., Pawlak, G., Effects of physical structure and processes on thin zooplankton layers in Mamala Bay, Hawaii. Mar. Ecol. Prog. Ser. 409 (2010), 95–106, 10.3354/meps08614.
89. Shamberger, K.E.F., Feely, R.A., Sabine, C.L., Atkinson, M.J., DeCarlo, E.H., Mackenzie, F.T., Drupp, P.S., Butterfield, D.A., Calcification and organic production on a Hawaiian coral reef. Mar. Chem. 127 (2011), 64–75, 10.1016/j.marchem.2011.08.003.
90. Sharp, J.H., Improved analysis for “particulate” organic carbon and nitrogen from seawater. Limnol. Oceanogr. 19 (1974), 984–989.
91. Shum, K.T., The effects of wave-induced pore water circulation on the transport of reactive solutes below a rippled sediment bed. J. Geophys. Res. Oceans 98 (1993), 10289–10301.
92. 2 doubles. Geophys. Res. Lett., 36, 2009, L05606, 10.1029/2008GL036282.
93. Smith, S.V., Kimmerer, W., Laws, E., Kaneohe Bay sewage diversion experiment: perspectives on ecosystem responses to nutritional perturbation. Pac. Sci., 35, 1981.
94. Stoessell, R.K., Effects of sulfate reduction on CaCO3 dissolution and precipitation in mixing-zone fluids. J. Sediment. Petrol. 62 (1992), 873–880.
95. Thorstenson, D.C., Plummer, L.N., Equilibrium criteria for two-component solids reacting with fixed composition in an aqueous phase - example: the Magnesian calcites. Am. J. Sci. 277 (1977), 1203–1223.
96. Tomlinson, M.S., De Carlo, E.H., The need for high resolution time series date to characterize Hawaiian streams. J. Am. Water Resour. Assoc. 39 (2003), 113–123.
97. Tomlinson, M.S., De Carlo, E.H., McManus, M.A., Pawlak, G., Steward, G.F., Sansone, F.J., Nigro, O.D., Timmerman, R.E., Patterson, J., Jaramillo, S., Ostrander, C.E., Characterizing the effects of two storms on the coastal waters of O ‘ahu, Hawai ’i, using data from the Pacific Islands ocean observing system. Oceanography 24 (2011), 182–199, 10.5670/oceanog.2011.38.
98. Tribble, G.W., Early Diagensis in a Coral Reef Framework. 1990, University of Hawaii.
99. Tribble, G.W., Organic matter oxidation and aragonite diagenesis in a coral reef. SEPM J. Sediment. Res. 63 (1993), 523–527, 10.1306/D4267B45-2B26-11D7-8648000102C1865D.
100. Tribble, G.W., Sansone, F.J., Li, Y., Smith, S.V., Buddemeier, R.W., Material Fluxes from a Reef Framework. Proc. 6th Int. Coral Reef Symp. Aust., 2, 1988, 577–582.
101. Tribble, G.W., Sansone, F.J., Smith, S.V., Stoichiometric modeling of carbon diagenesis within a coral reef framework. Geochim. Cosmochim. Acta 54 (1990), 2439–2449.
102. Tribollet, A., Godinot, C., Atkinson, M., Langdon, C., Effects of elevated pCO2 on dissolution of coral carbonates by microbial euendoliths. Glob. Biogeochem. Cycles, 23, 2009, 10.1029/2008GB003286 (n/a–n/a).
103. Ver, L.M., Mackenzie, F.T., Lerman, A., Biogeochemical responses of the carbon cycle to natural and human perturbations: past, present, and future. Am. J. Sci. 299 (1999), 762–801.
104. Walter, L.M., Morse, J.W., The dissolution kinetics of shallow marine carbonates in seawater: a laboratory study. Geochim. Cosmochim. Acta 49 (1985), 1503–1515.
105. Yamamoto, S., Kayanne, H., Tokoro, T., Kuwae, T., Watanabe, A., Total alkalinity flux in coral reefs estimated from eddy covariance and sediment pore-water profiles. Limnol. Oceanogr. 60 (2015), 229–241, 10.1002/lno.10018.