Erratum to: Environmental surveillance of viruses by tangential flow filtration and metagenomic reconstruction (Eurosurveillance, (2016) 21:15, 10.2807/1560-7917.ES.2016.21.15.30193);Environmental surveillance of viruses by tangential flow filtration and metagenomic reconstruction

Eurosurveillance

Volumn 21, Issue 15, 2016, Pages

  Furtak, V ^a   Roivainen, M ^b   Mirochnichenko, O ^a   Zagorodnyaya, T ^a   Laassri, M ^a   Zaidic, S Z ^c   Rehman, L ^c   Alam, M M ^c   Chizhikov, V ^a   Chumakov, Konstantin ^a  

^a CENTER FOR DRUG EVALUATION AND RESEARCH   (United States)

^b NATIONAL PUBLIC HEALTH INSTITUTE   (Finland)

^c NATIONAL INSTITUTE OF HEALTH   (Pakistan)

Author keywords

[No Author keywords available]

Indexed keywords

COMPLEMENTARY DNA; ORAL POLIOMYELITIS VACCINE; RNA; SEWAGE; VIRUS RNA;

ANIMAL CELL; ARTICLE; BIOINFORMATICS; CELL CULTURE; CLUSTER ANALYSIS; DRUG DOSE TITRATION; ENTEROVIRUS; FILTRATION; GENE AMPLIFICATION; GENE SEQUENCE; HUMAN; IMMUNOPRECIPITATION; METAGENOMICS; NONHUMAN; POLIOMYELITIS VIRUS; REAL TIME POLYMERASE CHAIN REACTION; RHABDOMYOSARCOMA CELL; SEWAGE; TANGENTIAL FLOW FILTRATION; VIRUS ISOLATION; ENVIRONMENTAL MONITORING; FINLAND; FLOW CYTOMETRY; GENETICS; HEALTH SURVEY; HIGH THROUGHPUT SEQUENCING; ISOLATION AND PURIFICATION; MICROBIOLOGICAL EXAMINATION; PAKISTAN; PROCEDURES; ULTRAFILTRATION; VIROLOGY;

ENVIRONMENTAL MONITORING; FINLAND; FLOW CYTOMETRY; HIGH-THROUGHPUT NUCLEOTIDE SEQUENCING; HUMANS; METAGENOMICS; MICROBIOLOGICAL TECHNIQUES; PAKISTAN; POLIOVIRUS; POPULATION SURVEILLANCE; RNA, VIRAL; SEWAGE; ULTRAFILTRATION;

EID: 84964052754     PISSN: 1025496X     EISSN: 15607917     Source Type: Journal    
DOI: 10.2807/1560-7917.ES.2016.21.19.30230     Document Type: Erratum

References (28)

1. Centers for Disease Control and Prevention (CDC),. Evaluating surveillance indicators supporting the Global Polio Eradication Initiative, 2011-2012. MMWR Morb Mortal Wkly Rep. 2013; 62(14): 270-4. PMID: 23575241.
2. Hovi T, Shulman LM, van der Avoort H, Deshpande J, Roivainen M, DE Gourville EM. Role of environmental poliovirus surveillance in global polio eradication and beyond. Epidemiol Infect. 2012; 140(1): 1-13. DOI: 10. 1017/S095026881000316X PMID: 21849095.
3. Asghar H, Diop OM, Weldegebriel G, Malik F, Shetty S, El Bassioni L, et al. Environmental surveillance for polioviruses in the Global Polio Eradication Initiative. J Infect Dis. 2014; 210(Suppl 1): S294-303. DOI: 10. 1093/infdis/jiu384 PMID: 25316848.
4. Manor Y, Handsher R, Halmut T, Neuman M, Bobrov A, Rudich H, et al. Detection of poliovirus circulation by environmental surveillance in the absence of clinical cases in Israel and the Palestinian authority. J Clin Microbiol. 1999; 37(6): 1670-5. PMID: 10325305.
5. Shulman LM, Gavrilin E, Jorba J, Martin J, Burns CC, Manor Y, et al. Molecular epidemiology of silent introduction and sustained transmission of wild poliovirus type 1, Israel, 2013. Euro Surveill. 2014; 19(7): 20709. DOI: 10. 2807/1560-7917. ES2014. 19. 7. 20709 PMID: 24576471.
6. El Bassioni L, Barakat I, Nasr E, de Gourville EM, Hovi T, Blomqvist S, et al. Prolonged detection of indigenous wild polioviruses in sewage from communities in Egypt. Am J Epidemiol. 2003; 158(8): 807-15. DOI: 10. 1093/aje/kwg202 PMID: 14561671.
7. Shulman LM, Manor Y, Sofer D, Handsher R, Swartz T, Delpeyroux F, et al. Neurovirulent vaccine-derived polioviruses in sewage from highly immune populations. PLoS One. 2006; 1(1): e69. DOI: 10. 1371/journal. pone. 0000069 PMID: 17183700.
8. Al-Hello H, Jorba J, Blomqvist S, Raud R, Kew O, Roivainen M. Highly divergent type 2 and 3 vaccine-derived polioviruses isolated from sewage in Tallinn, Estonia. J Virol. 2013; 87(23): 13076-80. DOI: 10. 1128/JVI. 01174-13 PMID: 24049178.
9. Hovi T, Paananen A, Blomqvist S, Savolainen-Kopra C, Al-Hello H, Smura T, et al. Characteristics of an environmentally monitored prolonged type 2 vaccine derived poliovirus shedding episode that stopped without intervention. PLoS One. 2013; 8(7): e66849. DOI: 10. 1371/journal. pone. 0066849 PMID: 23935826.
10. Albertson P. Two-phase separation of viruses. In Maramorosch K, Koprowski H, eds. Methods of virology. 1967: 303-21.
11. Más Lago P, Gary HE, Pérez LS, Cáceres V, Olivera JB, Puentes RP, et al. Poliovirus detection in wastewater and stools following an immunization campaign in Havana, Cuba. Int J Epidemiol. 2003; 32(5): 772-7. DOI: 10. 1093/ije/dyg185 PMID: 14559748.
12. World Health Organization (WHO). Guidelines for environmental surveillance of poliovirus circulation. Geneva, Switzerland: WHO; 2003.
13. Tambini G, Andrus JK, Marques E, Boshell J, Pallansch M, de Quadros CA, et al. Direct detection of wild poliovirus circulation by stool surveys of healthy children and analysis of community wastewater. J Infect Dis. 1993; 168(6): 1510-4. DOI: 10. 1093/infdis/168. 6. 1510 PMID: 8245537.
14. Lewis GD, Metcalf TG. Polyethylene glycol precipitation for recovery of pathogenic viruses, including hepatitis A virus and human rotavirus, from oyster, water, and sediment samples. Appl Environ Microbiol. 1988; 54(8): 1983-8. PMID: 2845860.
15. Shields PA, Farrah SR. Concentration of viruses in beef extract by flocculation with ammonium sulfate. Appl Environ Microbiol. 1986; 51(1): 211-3. PMID: 3006587.
16. Guttman-Bass N, Catalano-Sherman J. Humic acid interference with virus recovery by electropositive microporous filters. Appl Environ Microbiol. 1986; 52(3): 556-61. PMID: 3021058.
17. Liu P, Hill VR, Hahn D, Johnson TB, Pan Y, Jothikumar N, et al. Hollow-fiber ultrafiltration for simultaneous recovery of viruses, bacteria and parasites from reclaimed water. J Microbiol Methods. 2012; 88(1): 155-61. DOI: 10. 1016/j. mimet. 2011. 11. 007 PMID: 22108496.
18. Smith CM, Hill VR. Dead-end hollow-fiber ultrafiltration for recovery of diverse microbes from water. Appl Environ Microbiol. 2009; 75(16): 5284-9. DOI: 10. 1128/AEM. 00456-09 PMID: 19561183.
19. Thurber RV, Haynes M, Breitbart M, Wegley L, Rohwer F. Laboratory procedures to generate viral metagenomes. Nat Protoc. 2009; 4(4): 470-83. DOI: 10. 1038/nprot. 2009. 10 PMID: 19300441.
20. Pipkin PA, Wood DJ, Racaniello VR, Minor PD. Characterisation of L cells expressing the human poliovirus receptor for the specific detection of polioviruses in vitro. J Virol Methods. 1993; 41(3): 333-40. DOI: 10. 1016/0166-0934(93)90022-J PMID: 8386181.
21. Kilpatrick DR, Yang CF, Ching K, Vincent A, Iber J, Campagnoli R, et al. Rapid group-, serotype-, and vaccine strainspecific identification of poliovirus isolates by real-time reverse transcription-PCR using degenerate primers and probes containing deoxyinosine residues. J Clin Microbiol. 2009; 47(6): 1939-41. DOI: 10. 1128/JCM. 00702-09 PMID: 19386844.
22. Dinsdale EA, Edwards RA, Hall D, Angly F, Breitbart M, Brulc JM, et al. Functional metagenomic profiling of nine biomes. Nature. 2008; 452(7187): 629-32. DOI: 10. 1038/nature06810 PMID: 18337718.
23. Cantalupo PG, Calgua B, Zhao G, Hundesa A, Wier AD, Katz JP, et al. Raw sewage harbors diverse viral populations. MBio. 2011; 2(5): e00180-11. DOI: 10. 1128/mBio. 00180-11 PMID: 21972239.
24. Ng TF, Marine R, Wang C, Simmonds P, Kapusinszky B, Bodhidatta L, et al. High variety of known and new RNA and DNA viruses of diverse origins in untreated sewage. J Virol. 2012; 86(22): 12161-75. DOI: 10. 1128/JVI. 00869-12 PMID: 22933275.
25. Prachayangprecha S, Schapendonk CM, Koopmans MP, Osterhaus AD, Schürch AC, Pas SD, et al. Exploring the potential of next-generation sequencing in detection of respiratory viruses. J Clin Microbiol. 2014; 52(10): 3722-30. DOI: 10. 1128/JCM. 01641-14 PMID: 25100822.
26. Zhang T, Breitbart M, Lee WH, Run JQ, Wei CL, Soh SW, et al. RNA viral community in human feces: prevalence of plant pathogenic viruses. PLoS Biol. 2006; 4(1): e3. DOI: 10. 1371/journal. pbio. 0040003 PMID: 16336043.
27. Mueller C, Flotte TR. Clinical gene therapy using recombinant adeno-associated virus vectors. Gene Ther. 2008; 15(11): 858-63. DOI: 10. 1038/gt. 2008. 68 PMID: 18418415.
28. Plotkin SA, Vidor E. Poliovirus vaccine-inactivated. In: Plotkin SA, Orenstein WA, Offit PA, editors. Vaccines. 5 ed. Philadelphia: W. B. Saunders; 2008. p. 605-29.