Data quality issues in big data

Proceedings - 2015 IEEE International Conference on Big Data, IEEE Big Data 2015

Volumn , Issue , 2015, Pages 2654-2660

  Rao, Dhana ^a   Gudivada, Venkat N ^a   Raghavan, Vijay V ^b  

^a EAST CAROLINA UNIVERSITY   (United States)

^b University of Louisiana at Lafayette   (United States)

Author keywords

big data; biological data; Data quality; information quality

Indexed keywords

DATA INTEGRATION; DATA REDUCTION;

BIG DATA APPLICATIONS; BIOLOGICAL DATA; BIOLOGICAL DATABASE; DATA CONTEXTS; DATA QUALITY; INFORMATION QUALITY; INTEGRATION ISSUES; TRACE BACKS;

BIG DATA;

EID: 84963755775     PISSN: None     EISSN: None     Source Type: Conference Proceeding    
DOI: 10.1109/BigData.2015.7364065     Document Type: Conference Paper

References (39)

1. M. Quinion, "Garbage in, garbage out," World Wide Words, http://www.worldwidewords.org/qa/qagar1. htm, accessed: 13 September 2015.
2. V. Gudivada, D. Rao, and V. Raghavan, Big Data Analytics. Elsevier, 2015, ch. Big Data Driven Natural Language Processing Research and Applications, pp. 203-238.
3. V. Gudivada, R. Baeza-Yates, and V. Raghavan, "Big data: Promises and problems," IEEE Computer, vol. 48, no. 3, pp. 20-23, Mar. 2015.
4. X. Li, X. L. Dong et al., "Truth finding on the deep web: is the problem solved?" in Proceedings of the 39th international conference on Very Large Data Bases, ser. PVLDB'13. VLDB Endowment, 2013, pp. 97-108.
5. R. Wang, V. Storey, and C. Firth, "A framework for analysis of data quality research," IEEE Transactions on Knowledge and Data Engineering, vol. 7, no. 4, pp. 623-640, 1995.
6. S. Sadiq, N. K. Yeganeh, and M. Indulska, "20 years of data quality research: Themes, trends and synergies," in Proceedings of the Twenty-Second Australasian Database Conference-Volume 115. Darlinghurst, Australia, Australia: Australian Computer Society, Inc., 2011, pp. 153-162.
7. L. F. R. Lima, A. C. G. Macada, and L. M. Vargas, "Research into information quality: A study of the state of the art in IQ and its consolidation," in Proceedings of the 11th International Conference on Information Quality, MIT, Cambridge, MA, USA, November 10-12, 2006, 2006, pp. 146-158.
8. S. E. Madnick, R. Y. Wang et al., "Overview and framework for data and information quality research," J. Data and Information Quality, vol. 1, no. 1, pp. 2:1-2:22, Jun. 2009.
9. A. Klein, "Incorporating quality aspects in sensor data streams," in Proceedings of the ACM First Ph.D. Workshop in CIKM. New York, NY, USA: ACM, 2007, pp. 77-84.
10. S. M. Embury, P. Missier et al., "Incorporating domainspecific information quality constraints into database queries," J. Data and Information Quality, vol. 1, no. 2, pp. 11:1-11:31, Sep. 2009.
11. A. Chalamalla, I. F. Ilyas et al., "Descriptive and prescriptive data cleaning," in Proceedings of the 2014 ACM SIGMOD International Conference on Management of Data, ser. SIGMOD '14. New York, NY, USA: ACM, 2014, pp. 445-456.
12. A. Even and G. Shankaranarayanan, "Utility-driven assessment of data quality," SIGMIS Database, vol. 38, no. 2, pp. 75-93, May 2007.
13. -, "Dual assessment of data quality in customer databases," J. Data and Information Quality, vol. 1, no. 3, pp. 15:1-15:29, Dec. 2009.
14. P. Glowalla and A. Sunyaev, "Process-driven data quality management: A critical review on the application of process modeling languages," J. Data and Information Quality, vol. 5, no. 1-2, pp. 7:1-7:30, Sep. 2014.
15. H. M. Sneed and R. Majnar, "A process for assessing data quality," in Proceedings of the 8th International Workshop on Software Quality. New York, NY, USA: ACM, 2011, pp. 50-57.
16. S. E. Celniker, L. A. L. Dillon et al., "Unlocking the secrets of the genome," Nature, vol. 459, no. 7249, pp. 927-930, 06 2009.
17. K. Karasavvas, R. Baldock, and A. Burger, "Bioinformatics integration and agent technology," Journal of Biomedical Informatics, vol. 37, no. 3, pp. 205-219, 2004.
18. Z. Zhang, V. B. Bajic et al., "Data integration in bioinformatics: Current efforts and challenges," in Bioinformatics-Trends and Methodologies, M. A. Mahdavi, Ed. InTech, 2011.
19. V. Lapatas, M. Stefanidakis et al., "Data integration in biological research: an overview," Journal of Biological Research-Thessaloniki, vol. 22, no. 1, 2015.
20. X. M. FernAandez-Suarez, D. J. Rigden, and M. Y. Galperin, "The 2014 nucleic acids research database issue and an updated nar online molecular biology database collection," Nucleic Acids Research, vol. 42, no. D1, pp. D1-D6, 2014.
21. D. Zou, L. Ma et al., "Biological databases for human research," Genomics, Proteomics & Bioinformatics, vol. 13, no. 1, pp. 55-63, 2015.
22. E. Demir, M. P. Cary et al., "The biopax community standard for pathway data sharing," Nat Biotech, vol. 28, no. 9, pp. 935-942, 09 2010.
23. T. Katayama, K. Arakawa et al., "The dbcls biohackathon: standardization and interoperability for bioinformatics web services and workflows," Journal of Biomedical Semantics, vol. 1, no. 1, p. 8, 2010.
24. D. L. Rubin, N. H. Shah, and N. F. Noy, "Biomedical ontologies: a functional perspective," Briefings in Bioinformatics, vol. 9, no. 1, pp. 75-90, 2008.
25. N. F. Noy, N. H. Shah et al., "Bioportal: ontologies and integrated data resources at the click of a mouse," Nucleic Acids Research, vol. 37, no. suppl 2, pp. W170-W173, 2009.
26. M. Ashburner, C. A. Ball et al., "Gene ontology: tool for the unification of biology," Nat Genet, vol. 25, no. 1, pp. 25-29, 05 2000.
27. S. Shah, Y. Huang et al., "Atlas-A data warehouse for integrative bioinformatics," BMC Bioinformatics, vol. 6, no. 1, p. 34, 2005.
28. T. Lee, Y. Pouliot et al., "Biowarehouse: a bioinformatics database warehouse toolkit," BMC Bioinformatics, vol. 7, no. 1, p. 170, 2006.
29. M. Wilkinson, M. Senger et al., "Interoperability with moby 1.0-it is better than sharing your toothbrush!" Brief Bioinform, vol. 9, pp. 220-231, 2008.
30. P. Neerincx and J. Leunissen, "Evolution of web services in bioinformatics," Briefings in Bioinformatics, vol. 6, no. 2, pp. 178-188, 2005. [Online]. Available: http://bib.oxfordjournals.org/content/6/2/178.abstract
31. E. Antezana, M. Kuiper, and V. Mironov, "Biological knowledge management: the emerging role of the semantic web technologies," Briefings in Bioinformatics, vol. 10, no. 4, pp. 392-407, 2009.
32. M. DiBernardo, R. Pottinger, and M. Wilkinson, "Semiautomatic web service composition for the life sciences using the biomoby semantic web framework," Journal of Biomedical Informatics, vol. 41, no. 5, pp. 837-847, 2008.
33. F. Belleau, M.-A. Nolin et al., "Bio2rdf: Towards a mashup to build bioinformatics knowledge systems," J. of Biomedical Informatics, vol. 41, no. 5, pp. 706-716, Oct. 2008.
34. K.-H. Cheung, K. Y. Yip et al., "Hcls 2.0/3.0: Health care and life sciences data mashup using web 2.0/3.0," Journal of biomedical informatics, vol. 41, no. 5, pp. 694-705, 10 2008.
35. A. Ruttenberg, T. Clark et al., "Advancing translational research with the semantic web," BMC Bioinformatics, vol. 8, no. Suppl 3, p. S2, 2007.
36. J. Giles, "Key biology databases go wiki," Nature, vol. 445, no. 7129, pp. 691-691, 02 2007.
37. T.-L. Lee, "Big data: open-source format needed to aid wiki collaboration," Nature, vol. 455, no. 7212, pp. 461-461, 09 2008.
38. O. Cure, "Improving the data quality of drug databases using conditional dependencies and ontologies," J. Data and Information Quality, vol. 4, no. 1, pp. 3:1-3:21, Oct. 2012.
39. C. Collins and K. Janssens, "Creating a general (family) practice epidemiological database in ireland-data quality issue management," J. Data and Information Quality, vol. 4, no. 1, pp. 2:1-2:9, Oct. 2012.