Methanol production by a broad phylogenetic array of marine phytoplankton

PLoS ONE

Volumn 11, Issue 3, 2016, Pages

  Mincer, Tracy J ^a   Aicher, Athena C ^a  

^a WOODS HOLE OCEANOGRAPHIC INSTITUTION   (United States)

Author keywords

[No Author keywords available]

Indexed keywords

METHANOL;

ARTICLE; CONTROLLED STUDY; CRYPTOPHYTA; CYANOBACTERIUM; EMILIANIA HUXLEYI; HAPTOPHYTA; MASS FRAGMENTOGRAPHY; MOLECULAR PHYLOGENY; NANNOCHLOROPSIS OCULATA; NONHUMAN; PHAEODACTYLUM TRICORNUTUM; PHYTOPLANKTON; PROCHLOROCOCCUS MARINUS; RHODOMONAS SALINA; SYNECHOCOCCUS; TRICHODESMIUM ERYTHRAEUM; BIOMASS; DIATOM; METABOLISM;

BIOMASS; CRYPTOPHYTA; CYANOBACTERIA; DIATOMS; HAPTOPHYTA; METHANOL; PHYTOPLANKTON;

EID: 84962584341     PISSN: None     EISSN: 19326203     Source Type: Journal    
DOI: 10.1371/journal.pone.0150820     Document Type: Article

References (41)

1. Singh H, Chen Y, Staudt A, Jacob D, Blake D, Heikes B, et al. Evidence from the Pacific troposphere for large global sources of oxygenated organic compounds. Nature. 2001;410(6832):1078-81. ISI:000168285500043. PMID: 11323667
2. Lidstrom ME. Aerobic Methylotrophic Prokaryotes. The Prokaryotes. 2006;2:618-34.
3. Heikes BG, Chang WN, Pilson M E Q, Swift E, Singh HB, Guenther A, et al. Atmospheric methanol budget and ocean implication. Global Biogeochemical Cycles. 2002;16(4). ISI:000181208700002.
4. Dixon JL, Sargeant S, Nightingale PD, Murrell JC. Gradients in microbial methanol uptake: productive coastal upwelling waters to oligotrophic gyres in the Atlantic Ocean. Isme J. 2013;7(3):568-80. WOS:000316726400013. doi: 10.1038/ismej.2012.130 PMID: 23178665
5. Dixon JL, Beale R, Nightingale PD. Rapid biological oxidation of methanol in the tropical Atlantic: significance as a microbial carbon source. Biogeosciences. 2011;8(9):2707-16. WOS:000295375700021.
6. Giovannoni SJ, Hayakawa DH, Tripp HJ, Stingl U, Givan SA, Cho JC, et al. The small genome of an abundant coastal ocean methylotroph. Environmental Microbiology. 2008;10(7):1771-82. ISI:000256442700011. doi: 10.1111/j.1462-2920.2008.01598.x PMID: 18393994
7. Fall R, Benson AA. Leaf methanol-The simplest natural product from plants. Trends in Plant Science. 1996;1(9):296-301. ISI:A1996VE38800005.
8. Beale R, Dixon JL, Arnold SR, Liss PS, Nightingale PD. Methanol, acetaldehyde, and acetone in the surface waters of the Atlantic Ocean. Journal of Geophysical Research-Oceans. 2013;118(10):5412-25. WOS:000327380100042.
9. Millet DB, Jacob DJ, Custer TG, de Gouw JA, Goldstein AH, Karl T, et al. New constraints on terrestrial and oceanic sources of atmospheric methanol. Atmospheric Chemistry and Physics. 2008;8:6887-905.
10. Yang M, Nightingale PD, Beale R, Liss PS, Blomquist B, Fairall C. Atmospheric deposition of methanol over the Atlantic Ocean. Proc Natl Acad Sci USA. 2013;110(50):20034-9. doi: 10.1073/pnas. 1317840110 PMID: 24277830; PubMed Central PMCID: PMCPMC3864313.
11. Riemer D. Marine and terrestrial sources of reactive volatile compounds and their impact on the tropospheric ozone chemistry of the earth. PhD Dissertation Univ of Miami, Miami, Fla. 1998.
12. Field CB, Behrenfeld MJ, Randerson JT, Falkowski P. Primary production of the biosphere: Integrating terrestrial and oceanic components. Science. 1998;281(5374):237-40. doi: 10.1126/science.281. 5374.237 WOS:000074714200042. PMID: 9657713
13. Waterbury J. The Cyanobacteria-Isolation, Purification and Identification. The Prokaryotes. 2006;4:1053-73.
14. Moore LR, Coe A, Zinser ER, Saito MA, Sullivan MB, Lindell D, et al. Culturing the marine cyanobacterium Prochlorococcus. Limnol Oceanogr-Meth. 2007;5:353-62. WOS:000251564500007.
15. Wuchter C, Banning E, Mincer TJ, Drenzek NJ, Coolen M J L. Microbial diversity and methanogenic activity of Antrim Shale formation waters from recently fractured wells. Front Microbiol. 2013;4. ARTN 367 doi: 10.3389/fmicb.2013.00367 WOS:000331544400001.
16. Wells G, Prest H, Russ CW. Signal, Noise, and Detection Limits in Mass Spectrometry. Technical Note for Agilent Technologies Inc. 2011; (Publication 5990-7651EN).
17. Rippka R, Coursin T, Hess W, Lichtle C, Scanlan DJ, Palinska KA, et al. Prochlorococcus marinus Chisholm et al.1992 subsp pastoris subsp nov strain PCC 9511, the first axenic chlorophyll a (2)/b (2) - containing cyanobacterium (Oxyphotobacteria). Int J Syst Evol Micr. 2000;50:1833-47. WOS:000089717800018.
18. Tripp HJ. Counting marine microbes with Guava Easy-Cyte 96 well plate reading flow cytometer Nature Protoc Exch 2008. doi: 10.1038/nprot.2008.29
19. Waterbury JB, Watson SW, Valois FW, Franks DG. Biological and ecological characterization of the marine unicellular cyanobacterium Synechococcus. Can Bull Fish Aquat Sci 1986;214 (no. 71).
20. Hama T, Miyazaki T, Ogawa Y, Iwakuma T, Takahashi M, Otsuki A, et al. Measurement of Photosynthetic Production of a Marine-Phytoplankton Population Using a Stable C-13 Isotope. Marine Biology. 1983;73(1):31-6. ISI:A1983QK35200004.
21. Sailer M, Helms GL, Henkel T, Niemczura WP, Stiles ME, Vederas JC. 15N- and 13C-labeled media from Anabaena sp. for universal isotopic labeling of bacteriocins: NMR resonance assignments of leucocin A from Leuconostocgelidumandnisin A from Lactococcus lactis. Biochemistry. 1993;32(1):310-8. PMID: 8418850.
22. Andersen RA, Morton SL, Sexton JP. Provasoli-Guillard National Center for Culture of Marine Phytoplankton 1997 list of strains. J Phycol. 1997;33(6):1-75. doi: 10.1111/j.0022-3646.1997.00001.x WOS:000071587000001.
23. Hmelo LR, Van Mooy B A S, Mincer TJ. Characterization of bacterial epibionts on the cyanobacterium Trichodesmium. AquatMicrob Ecol. 2012;67(1):1-U119. doi: 10.3354/ame01571 WOS:000308651800001.
24. Hmelo LR. Microbial interactions associated with biofilms attached to Trichodesmium spp. and detrital articles in the ocean.: Massachusetts Institute of Technology/Woods Hole Oceanographic Institution; 2010.
25. McCarren J, Becker JW, Repeta DJ, Shi Y, Young CR, Malmstrom RR, et al. Microbial community transcriptomes reveal microbes and metabolic pathways associated with dissolved organic matter turnover in the sea. Proc Natl Acad Sci U SA. 2010;107(38):16420-7. doi: 10.1073/pnas.1010732107 PMID: 20807744; PubMed Central PMCID: PMCPMC2944720.
26. Chistoserdova L, Kalyuzhnaya MG, Lidstrom ME. The Expanding World of Methylotrophic Metabolism. Annual Review of Microbiology. 2009;63:477-99. ISI:000270910300023. doi: 10.1146/annurev. micro. 091208.073600 PMID: 19514844
27. Morris RM, Longnecker K, Giovannoni SJ. Pirellula and OM43 are among the dominant lineages identified in an Oregon coast diatom bloom. Environmental Microbiology. 2006;8(8):1361-70. ISI:000238885300006. PMID: 16872400
28. Sowell SM, Abraham PE, Shah M, Verberkmoes NC, Smith DP, Barofsky DP, et al. Environmental proteomics of microbial plankton in a highly productive coastal upwelling system. Isme J. 2010; Advance online publication: 1-10.
29. Williams TJ, Long E, Evans F, De Maere MZ, Lauro FM, Raftery MJ, et al. A metaproteomic assessment of winter and summer bacterioplankton from Antarctic Peninsula coastal surface waters. Isme J. 2012;6(10):1883-900. doi: 10.1038/ismej.2012.28 WOS:000309056300008. PMID: 22534610
30. Janvier M, Frehel C, Grimont F, Gasser F. Methylophaga-Marina Gen-Nov, Sp-Nov. and Methylophaga-Thalassica Sp-Nov, Marine Methylotrophs. International Journal of Systematic Bacteriology. 1985;35(2):131-9. ISI:A1985AFP1500002.
31. Omer ZS, Tombolini R, Broberg A, Gerhardson B. Indole-3-acetic acid production by pink-pigmented facultative methylotrophic bacteria. Plant Growth Regul. 2004;43(1):93-6. doi: 10.1023/B:GROW. 0000038360.09079.ad WOS:000223359000011.
32. Omer ZS, Tombolini R, Gerhardson B. Plant colonization by pink-pigmented facultative methylotrophic bacteria (PPFMs). Fems Microbiol Ecol. 2004;47(3):319-26. doi: 10.1016/S0168-6496 (04) 00003-0 WOS:000220264000006. PMID: 19712320
33. Harley P, Greenberg J, Niinemets U, Guenther A. Environmental controls over methanol emission from leaves. Biogeosciences. 2007;4:1083-99.
34. Flombaum P, Gallegos JL, Gordillo RA, Rincon J, Zabala LL, Jiao N A Z, et al. Present and future global distributions of the marine Cyanobacteria Prochlorococcus and Synechococcus. P Natl Acad Sci USA. 2013;110(24):9824-9. doi: 10.1073/pnas.1307701110 WOS:000320930100056.
35. Singh H, Chen Y, Tabazadeh A, Fukui Y, Bey I, Yantosca R, et al. Distribution and fate of selected oxygenated organic species in the troposphere and lower stratosphere over the Atlantic. Journal of Geophysical Research-Atmospheres. 2000;105(D3):3795-805. ISI:000085479000022.
36. Fawcett D W R. Liquids, Solution, and Interfaces: From Classical Macroscopic Descriptions to Modern Microscopic Details. USA: Oxford University Press; 2004 June 4, 2004. 638 p.
37. Zhuang GC, Lin YS, Elvert M, Heuer VB, Hinrichs KU. Gas chromatographic analysis of methanol and ethanol in marine sediment pore waters: Validation and implementation of three pretreatment techniques. MarChem. 2014;160:82-90. doi: 10.1016/j.marchem.2014.01.011 WOS:000333718400009.
38. Christian JR, Karl DM. Measuring Bacterial Ectoenzyme Activities in Marine Waters Using Mercuric-Chloride as a Preservative and aControl. Mar. Ecol Prog Ser. 1995;123(1-3):217-24. doi: 10.3354/meps123217 WOS:A1995RQ34100022.
39. Domozych DS, Sorensen I, Popper ZA, Ochs J, Andreas A, Fangel JU, et al. Pectin Metabolism and Assembly in the Cell Wall of the Charophyte Green Alga Penium margaritaceum. Plant Physiol. 2014;165(1):105-18. doi: 10.1104/pp. 114.236257 WOS:000335906300009. PMID: 24652345
40. Schafer SE, Stevens ES. A Reexamination of the Double-Helix Model for Agarose Gels Using Optical-Rotation. Biopolymers. 1995;36(1):103-8. ISI:A1995RE50500008.
41. Painter T. The polysaccharides. Academic, San Diego Calif. 1983;2:195-285.