메뉴 건너뛰기




Volumn 32, Issue 6, 2016, Pages 943-945

WormExp: A web-based application for a Caenorhabditis elegans-specific gene expression enrichment analysis

Author keywords

[No Author keywords available]

Indexed keywords

ANIMAL; CAENORHABDITIS ELEGANS; FACTUAL DATABASE; GENE EXPRESSION PROFILING; INTERNET; SOFTWARE;

EID: 84962166688     PISSN: 13674803     EISSN: 14602059     Source Type: Journal    
DOI: 10.1093/bioinformatics/btv667     Document Type: Article
Times cited : (69)

References (16)
  • 1
    • 0034069495 scopus 로고    scopus 로고
    • Gene Ontology: Tool for the unification of biology
    • Ashburner,M. et al. (2000) Gene Ontology: tool for the unification of biology. Nat. Genet., 25, 25-29.
    • (2000) Nat. Genet. , vol.25 , pp. 25-29
    • Ashburner, M.1
  • 2
    • 58149182724 scopus 로고    scopus 로고
    • NCBI GEO: Archive for high-throughput functional genomic data
    • Barrett,T. et al. (2009) NCBI GEO: archive for high-throughput functional genomic data. Nucleic Acids Res., 37, D885-D890.
    • (2009) Nucleic Acids Res. , vol.37 , pp. D885-D890
    • Barrett, T.1
  • 3
    • 84930815231 scopus 로고    scopus 로고
    • The developmental intestinal regulator ELT-2 controls p38-dependent immune responses in adult C. Elegans
    • Block,D.H. et al. (2015) The developmental intestinal regulator ELT-2 controls p38-dependent immune responses in adult C. elegans, PLoS Genet., 11, e1005265.
    • (2015) PLoS Genet. , vol.11 , pp. e1005265
    • Block, D.H.1
  • 4
    • 0037246058 scopus 로고    scopus 로고
    • ArrayExpress-A public repository for microarray gene expression data at the EBI
    • Brazma,A. et al. (2003) ArrayExpress-A public repository for microarray gene expression data at the EBI. Nucleic Acids Res., 31, 68-71.
    • (2003) Nucleic Acids Res. , vol.31 , pp. 68-71
    • Brazma, A.1
  • 5
    • 79955934878 scopus 로고    scopus 로고
    • A comprehensive analysis of gene expression changes provoked by bacterial and fungal infection in C. Elegans
    • Engelmann,I. et al. (2011) A comprehensive analysis of gene expression changes provoked by bacterial and fungal infection in C. elegans. PloS One, 6, e19055.
    • (2011) PloS One , vol.6 , pp. e19055
    • Engelmann, I.1
  • 6
    • 75549084124 scopus 로고    scopus 로고
    • WormBase: A comprehensive resource for nematode research
    • Harris,T.W. et al. (2010) WormBase: A comprehensive resource for nematode research. Nucleic Acids Res., 38, D463-D467.
    • (2010) Nucleic Acids Res. , vol.38 , pp. D463-D467
    • Harris, T.W.1
  • 7
    • 0344319833 scopus 로고    scopus 로고
    • Identifying biological themes within lists of genes with EASE
    • Hosack,D.A. et al. (2003) Identifying biological themes within lists of genes with EASE. Genome Biol., 4, R70.
    • (2003) Genome Biol. , vol.4 , pp. R70
    • Hosack, D.A.1
  • 8
    • 0033982936 scopus 로고    scopus 로고
    • KEGG: Kyoto encyclopedia of genes and genomes
    • Kanehisa,M. and Goto,S. (2000) KEGG: kyoto encyclopedia of genes and genomes. Nucleic Acids Res., 28, 27-30.
    • (2000) Nucleic Acids Res. , vol.28 , pp. 27-30
    • Kanehisa, M.1    Goto, S.2
  • 9
    • 24644470505 scopus 로고    scopus 로고
    • Ontological analysis of gene expression data: Current tools, limitations, and open problems
    • Khatri,P. and DrǍghici,S. (2005) Ontological analysis of gene expression data: current tools, limitations, and open problems. Bioinformatics, 21, 3587-3595.
    • (2005) Bioinformatics , vol.21 , pp. 3587-3595
    • Khatri, P.1    DrǍghici, S.2
  • 10
    • 0035860551 scopus 로고    scopus 로고
    • A gene expression map for Caenorhabditis elegans
    • Kim,S.K. et al. (2001) A gene expression map for Caenorhabditis elegans. Science, 293, 2087-2092.
    • (2001) Science , vol.293 , pp. 2087-2092
    • Kim, S.K.1
  • 11
    • 0037767293 scopus 로고    scopus 로고
    • Predicting gene function from patterns of annotation
    • King,O.D. et al. (2003) Predicting gene function from patterns of annotation. Genome Res., 13, 896-904.
    • (2003) Genome Res. , vol.13 , pp. 896-904
    • King, O.D.1
  • 12
    • 84923556425 scopus 로고    scopus 로고
    • Why we need more ecology for genetic models such as C. Elegans
    • Petersen,C. et al. (2015) Why we need more ecology for genetic models such as C. elegans. Trends Genet., 31, 120-127.
    • (2015) Trends Genet. , vol.31 , pp. 120-127
    • Petersen, C.1
  • 13
    • 0035175010 scopus 로고    scopus 로고
    • The stanford microarray database
    • Sherlock,G. et al. (2001) The stanford microarray database. Nucleic Acids Res., 29, 152-155.
    • (2001) Nucleic Acids Res. , vol.29 , pp. 152-155
    • Sherlock, G.1
  • 14
    • 84870461332 scopus 로고    scopus 로고
    • InterMine: A flexible data warehouse system for the integration and analysis of heterogeneous biological data
    • Smith,R.N. et al. (2012) InterMine: A flexible data warehouse system for the integration and analysis of heterogeneous biological data. Bioinformatics, 28, 3163-3165.
    • (2012) Bioinformatics , vol.28 , pp. 3163-3165
    • Smith, R.N.1
  • 15
    • 27344435774 scopus 로고    scopus 로고
    • Gene set enrichment analysis: A knowledgebased approach for interpreting genome-wide expression profiles
    • Subramanian,A. et al. (2005) Gene set enrichment analysis: A knowledgebased approach for interpreting genome-wide expression profiles. Proc. Natl. Acad. Sci. USA., 102, 15545-15550.
    • (2005) Proc. Natl. Acad. Sci. USA. , vol.102 , pp. 15545-15550
    • Subramanian, A.1
  • 16
    • 84924237678 scopus 로고    scopus 로고
    • Overlapping and unique signatures in the proteomic and transcriptomic responses of the nematode Caenorhabditis elegans toward pathogenic Bacillus thuringiensis
    • Yang,W. et al. (2015) Overlapping and unique signatures in the proteomic and transcriptomic responses of the nematode Caenorhabditis elegans toward pathogenic Bacillus thuringiensis. Dev. Comp. Immunol., 51, 1-9.
    • (2015) Dev. Comp. Immunol. , vol.51 , pp. 1-9
    • Yang, W.1


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.