Differential mode of interaction of ThioflavinT with native β structural motif in human α 1-acid glycoprotein and cross beta sheet of its amyloid: Biophysical and molecular docking approach

Journal of Molecular Structure

Volumn 1117, Issue , 2016, Pages 208-217

  Ajmal, Mohammad Rehan ^a   Nusrat, Saima ^a   Alam, Parvez ^a   Zaidi, Nida ^a   Badr, Gamal ^b   Mahmoud, Mohamed H ^c,d   Rajpoot, Ravi Kant ^e   Khan, Rizwan Hasan ^a  

^a ALIGARH MUSLIM UNIVERSITY   (India)

^b Assiut University   (Egypt)

^c KING SAUD UNIVERSITY   (Saudi Arabia)

^d NATIONAL RESEARCH CENTRE   (Egypt)

^e INTERNATIONAL CENTRE FOR GENETIC ENGINEERING AND BIOTECHNOLOGY   (Italy)

Author keywords

Alpha 1 acid glycoprotein; Circular dichroism; Fluorescence spectroscopy; Isothermal titration calorimetry; Molecular docking

Indexed keywords

BINDING ENERGY; CALORIMETRY; CIRCULAR DICHROISM SPECTROSCOPY; DICHROISM; EXCITED STATES; FLUORESCENCE QUENCHING; FLUORESCENCE SPECTROSCOPY; FREE ENERGY; GIBBS FREE ENERGY; GLYCOPROTEINS; GROUND STATE; HYDROGEN BONDS; HYDROPHOBICITY; ISOTHERMS; MOLECULAR MODELING; THORIUM COMPOUNDS; TITRATION;

ALPHA-1-ACID GLYCOPROTEIN; DIFFERENTIAL INTERACTION; FLUORESCENCE EMISSION; GIBBS FREE ENERGY CHANGES; HYDROPHOBIC INTERACTIONS; INTERACTION MECHANISMS; ISOTHERMAL TITRATION CALORIMETRY; MOLECULAR DOCKING;

PROTEINS;

EID: 84961992349     PISSN: 00222860     EISSN: None     Source Type: Journal    
DOI: 10.1016/j.molstruc.2016.03.081     Document Type: Article

References (35)

1. H.B. Halsall, R.C. Austin, J.L. Dage, H. Sun, and K.T. Schlueter Structural aspects of alpha1-acid glycoprotein and its interaction International Symposium on Serum Albumin & Alpha1- Acid Glycoprotein from Basic Sciences to Clinical Applications: 2000 2000 45 54
2. K. Schmid, R.B. Nimberg, A. Kimura, H. Yamaguchi, and J.P. Binette The carbohydrate units of human plasma alpha-1-acid glycoprotein Biochimica Biophysica Acta BBA Protein Struct. 492 2 1977 291 302
3. T. Fournier, N.N. Medjoubi, and D. Porquet Alpha-1-acid glycoprotein Biochimica Biophysica Acta BBA Protein Struct. Mol. Enzym. 1482 1 2000 157 171
4. J.M. Kremer, J. Wilting, and L.H. Janssen Drug binding to human alpha-1-acid glycoprotein in health and disease Pharmacol. Rev. 40 1 1988 1 47
5. L. Dente, G. Ciliberto, and R. Cortese Structure of the human alpha-1-acid glycoprotein gene: sequence homology with other human acute phase protein genes Nucleic Acids Res. 13 11 1985 3941 3952
6. L. Dente, M.G. Pizza, A. Metspalu, and R. Cortese Structure and expression of the genes coding for human alpha 1-acid glycoprotein EMBO J. 6 8 1987 2289
7. Z.H. Israili, and P.G. Dayton Human alpha-1-glycoprotein and its interactions with drugs 1 2 Drug Metab. Rev. 33 2 2001 161 235
8. 0 crystal structure of alpha-1-acid glycoprotein (orosomucoid) solved by UV RIP reveals the broad drug-binding activity of this human plasma lipocalin J. Mol. Biol. 384 2 2008 393 405
9. W. Van Dijk, O. Pos, M.E. Van der Stelt, H.J. Moshage, S.H. Yap, L. Dente, P. Baumann, and C.B. Eap Inflammation-induced changes in expression and glycosylation of genetic variants of alpha 1-acid glycoprotein. Studies with human sera, primary cultures of human hepatocytes and transgenic mice Biochem. J. 276 1991 343 347
10. T. Ban, D. Hamada, K. Hasegawa, H. Naiki, and Y. Goto Direct observation of amyloid fibril growth monitored by thioflavin T fluorescence J. Biol. Chem. 278 19 2003 16462 16465
11. R. Ali, and N. Siddiqui Biological aspects of emerging benzothiazoles: a short review J. Chem. 2013 2013 12 Article ID 345198, http://dx.doi.org/10.1155/2013/345198
12. M.T. Gabr, N.S. El-Gohary, E.R. El-Bendary, and M.M. El-Kerdawy EGFR tyrosine kinase targeted compounds: in vitro antitumor activity and molecular modeling studies of new benzothiazole and pyrimido [2, 1-b] benzothiazole derivatives ECXLI 13 2014 573 585
13. J.K. Malik, F.V. Manvi, B.K. Nanjwade, S. Singh, and P. Purohit Review of the 2-amino substituted benzothiazoles: different methods of the synthesis Der Pharm. Lett. 2 1 2010 347 359
14. 2-amyloid protofilaments J. Mol. Biol. 353 4 2005 804 821
15. F. Zsila, and Y. Iwao The drug binding site of human α 1-acid glycoprotein: insight from induced circular dichroism and electronic absorption spectra Biochimica Biophysica Acta BBA Gen. Subj. 1770 5 2007 797 809
16. Y.-J. Hu, Y. Liu, J.-B. Wang, X.-H. Xiao, and S.-S. Qu Study of the interaction between monoammonium glycyrrhizinate and bovine serum albumin J. Pharm. Biomed. Anal. 36 4 2004 915 919
17. J.R. Albani Relation between the secondary structure of carbohydrate residues of α 1-acid glycoprotein (orosomucoid) and the fluorescence of the protein Carbohydr. Res. 338 10 2003 1097 1101
18. E. Ahmad, P. Sen, and R.H. Khan Structural stability as a probe for molecular evolution of homologous albumins studied by spectroscopy and bioinformatics Cell Biochem. Biophy. 61 2 2011 313 325
19. A. ScirÃ, M. Baldassarre, R. Galeazzi, and F. Tanfani Fibrillation properties of human α 1-acid glycoprotein Biochimie 95 2 2013 158 166
20. E. Ahmad, G. Rabbani, N. Zaidi, S. Singh, M. Rehan, M.M. Khan, S.K. Rahman, Z. Quadri, M. Shadab, and M.T. Ashraf Stereo-selectivity of human serum albumin to enantiomeric and isoelectronic pollutants dissected by spectroscopy, calorimetry and bioinformatics PLoS One 6 11 2011
21. U. Anand, C. Jash, R.K. Boddepalli, A. Shrivastava, and S. Mukherjee Exploring the mechanism of fluorescence quenching in proteins induced by tetracycline J. Phys. Chem. B 115 19 2011 6312 6320
22. N. Zaidi, M.R. Ajmal, G. Rabbani, E. Ahmad, and R.H. Khan A comprehensive insight into binding of hippuric acid to human serum albumin: a study to uncover its impaired elimination through hemodialysis PLoS One 8 8 2013 e71422
23. T. Peters Jr. All about Albumin: Biochemistry, Genetics, and Medical Applications 1995 Academic press
24. N. Zaidi, E. Ahmad, M. Rehan, G. Rabbani, M.R. Ajmal, Y. Zaidi, N. Subbarao, and R.H. Khan Biophysical insight into furosemide binding to human serum albumin: a study to unveil its impaired albumin binding in uremia J. Phys. Chem. B 117 9 2013 2595 2604
25. P. Rajdev, T. Mondol, A. Makhal, and S.K. Pal Simultaneous binding of anti-tuberculosis and anti-thrombosis drugs to a human transporter protein: a FRET study J. Photochem. Photobiol. B Biol. 103 2 2011 153 158
26. A. Bhogale, N. Patel, J. Mariam, P.M. Dongre, A. Miotello, and D.C. Kothari Comprehensive studies on the interaction of copper nanoparticles with bovine serum albumin using various spectroscopies Colloids Surf. B Biointerfaces 113 2014 276 284
27. 2-D arabinofuranoside with human serum albumin J. Lumin. 164 2015 123 130
28. M.R. Ajmal, N. Zaidi, P. Alam, S. Nusrat, M.K. Siddiqi, G. Badr, M.H. Mahmoud, and R.H. Khan Insight into the interaction of antitubercular and anticancer compound clofazimine with human serum albumin: spectroscopy and molecular modelling J. Biomol. Struct. Dyn. 2015 1 42 (just-accepted)
29. 2-cyclodextrin: a spectroscopic study J. Colloid Interface Sci. 439 2015 170 176
30. S. Fatima, R. Ajmal, G. Badr, and R.H. Khan Harmful effect of detergents on lipase Cell Biochem. Biophy. 70 2 2014 759 763
31. C.W. Ryan, N.J. Vogelzang, E.E. Vokes, H.L. Kindler, S.D. Undevia, R. Humerickhouse, A.K. André, Q. Wang, R.A. Carr, and M.J. Ratain Dose-ranging study of the safety and pharmacokinetics of atrasentan in patients with refractory malignancies Clin. Cancer Res. 10 13 2004 4406 4411
32. B. Ahmad, S. Parveen, and R.H. Khan Effect of albumin conformation on the binding of ciprofloxacin to human serum albumin: a novel approach directly assigning binding site Biomacromolecules 7 4 2006 1350 1356
33. M.R. Ajmal, A.S. Abdelhameed, P. Alam, and R.H. Khan Interaction of new kinase inhibitors cabozantinib and tofacitinib with human serum alpha-1 acid glycoprotein. A comprehensive spectroscopic and molecular docking approach Spectrochimica Acta Part A Mol. Biomol. Spectrosc. 159 2016 199 208
34. J. Ãstergaard, and H. Jensen Simultaneous evaluation of ligand binding properties and protein size by electrophoresis and Taylor dispersion in capillaries Anal. Chem. 81 20 2009 8644 8648
35. Z. Chi, and R. Liu Phenotypic characterization of the binding of tetracycline to human serum albumin Biomacromolecules 12 1 2010 203 209