-
4
-
-
0027563464
-
-
(c) Yang, A.S.; Gunner, M.R.; Sampogna, R.; Sharp, K.; Honig, B. Proteins 1993, 15, 252.
-
(1993)
Proteins
, vol.15
, pp. 252
-
-
Yang, A.S.1
Gunner, M.R.2
Sampogna, R.3
Sharp, K.4
Honig, B.5
-
5
-
-
0028305457
-
-
(d) Antosiewicz, J.; McCammon, J.A.; Gilson, M.K. J. Mol. Biol. 1994, 238, 415.
-
(1994)
J. Mol. Biol.
, vol.238
, pp. 415
-
-
Antosiewicz, J.1
McCammon, J.A.2
Gilson, M.K.3
-
6
-
-
0029665693
-
-
(e) Antosiewicz, J.; McCammon, J.A.; Gilson, M.K. Biochemistry 1996, 35, 7819.
-
(1996)
Biochemistry
, vol.35
, pp. 7819
-
-
Antosiewicz, J.1
McCammon, J.A.2
Gilson, M.K.3
-
8
-
-
0000945505
-
-
(a) Antosiewicz, J.; Briggs, J.M.; Elcock, A.H.; Gilson, M.K.; McCammon, J.A. J. Comput. Chem. 1996, 17, 1633.
-
(1996)
J. Comput. Chem.
, vol.17
, pp. 1633
-
-
Antosiewicz, J.1
Briggs, J.M.2
Elcock, A.H.3
Gilson, M.K.4
McCammon, J.A.5
-
12
-
-
0026095641
-
-
(b) Beroza, P.; Fredkin, D.R.; Okamura, M.Y.; Feher, G. Proc. Natl. Acad. Sci. U.S.A. 1991, 88, 5804.
-
(1991)
Proc. Natl. Acad. Sci. U.S.A.
, vol.88
, pp. 5804
-
-
Beroza, P.1
Fredkin, D.R.2
Okamura, M.Y.3
Feher, G.4
-
13
-
-
33751500123
-
-
Lim, C.; Bashford, D.; Karplus, M. J. Phys. Chem. 1991, 95, 5610.
-
(1991)
J. Phys. Chem.
, vol.95
, pp. 5610
-
-
Lim, C.1
Bashford, D.2
Karplus, M.3
-
14
-
-
33751159055
-
-
Chen, J.L.; Noodleman, L.; Case, D.A.; Bashford, D. J. Phys. Chem. 1994, 98, 11059.
-
(1994)
J. Phys. Chem.
, vol.98
, pp. 11059
-
-
Chen, J.L.1
Noodleman, L.2
Case, D.A.3
Bashford, D.4
-
15
-
-
84962440579
-
-
Richardson, W.H.; Peng, C.; Bashford, D.; Noodleman, L.; Case, D.A. Int. J. Quantum Chem. 1997, 61, 207.
-
(1997)
Int. J. Quantum Chem.
, vol.61
, pp. 207
-
-
Richardson, W.H.1
Peng, C.2
Bashford, D.3
Noodleman, L.4
Case, D.A.5
-
16
-
-
0031358013
-
-
(a) Topol, I.A.; Tawa, G.J.; Burt, S.K.; Rashin, A.A. J. Phys. Chem. A 1997, 101, 10075.
-
(1997)
J. Phys. Chem. A
, vol.101
, pp. 10075
-
-
Topol, I.A.1
Tawa, G.J.2
Burt, S.K.3
Rashin, A.A.4
-
17
-
-
0001591264
-
-
(b) Topol, I.A.; Burt, S.K.; Rashin A.A.; Erickson, J.W. J. Phys. Chem. A 2000, 104, 866.
-
(2000)
J. Phys. Chem. A
, vol.104
, pp. 866
-
-
Topol, I.A.1
Burt, S.K.2
Rashin, A.A.3
Erickson, J.W.4
-
18
-
-
0034287468
-
-
(c) Topol, I.A.; Tawa, G.J.; Caldwell, R.A.; Eissenstat, M.A.; Burt, S.K. J. Phys. Chem. A 2000, 104, 9619.
-
(2000)
J. Phys. Chem. A
, vol.104
, pp. 9619
-
-
Topol, I.A.1
Tawa, G.J.2
Caldwell, R.A.3
Eissenstat, M.A.4
Burt, S.K.5
-
19
-
-
0035892148
-
-
(d) Topol, I.A.; Nemukhin, A.V.; Dobrogorskaya, Y.A.; Burt, S.K. J. Phys. Chem. B 2001, 105, 11341.
-
(2001)
J. Phys. Chem. B
, vol.105
, pp. 11341
-
-
Topol, I.A.1
Nemukhin, A.V.2
Dobrogorskaya, Y.A.3
Burt, S.K.4
-
20
-
-
0035127984
-
-
Jang, Y.H.; Sowers, L.C.; Cagin, R.; Goddard, W.A., III. J. Phys. Chem. A 2001, 105, 274.
-
(2001)
J. Phys. Chem. A
, vol.105
, pp. 274
-
-
Jang, Y.H.1
Sowers, L.C.2
Cagin, R.3
Goddard W.A. III4
-
21
-
-
84961981283
-
-
Schüürmann, G.; Cossi, M.; Barone, V.; Tomasi, J. J. Phys. Chem. A 1998, 102, 6706.
-
(1998)
J. Phys. Chem. A
, vol.102
, pp. 6706
-
-
Schüürmann, G.1
Cossi, M.2
Barone, V.3
Tomasi, J.4
-
22
-
-
84946893847
-
-
(a) Miertus, S.; Scrocco, E.; Tomasi, J. J. Chem. Phys. 1981, 55, 117.
-
(1981)
J. Chem. Phys.
, vol.55
, pp. 117
-
-
Miertus, S.1
Scrocco, E.2
Tomasi, J.3
-
23
-
-
84962359221
-
-
(b) Cossi, M.; Barone, V.; Cammi, R.; Tomasi. J. Chem. Phys. Lett. 1996, 225, 327.
-
(1996)
Chem. Phys. Lett.
, vol.225
, pp. 327
-
-
Cossi, M.1
Barone, V.2
Cammi, R.3
Tomasi, J.4
-
24
-
-
0031209054
-
-
(c) Cances, E.; Mennucci, B.; Tomasi, J. J. Chem. Phys. 1997, 107, 3032.
-
(1997)
J. Chem. Phys.
, vol.107
, pp. 3032
-
-
Cances, E.1
Mennucci, B.2
Tomasi, J.3
-
25
-
-
84962425656
-
-
(a) da Silva, C.O.; da Silva, E.C.; Nascimento, M.A.C. J. Phys. Chem. A 1999, 103, 11194.
-
(1999)
J. Phys. Chem. A
, vol.103
, pp. 11194
-
-
Da Silva, C.O.1
Da Silva, E.C.2
Nascimento, M.A.C.3
-
26
-
-
0034704774
-
-
(b) da Silva, C.O.; da Silva, E.C.; Nascimento, M.A.C. J. Phys. Chem. A 2000, 104, 2402.
-
(2000)
J. Phys. Chem. A
, vol.104
, pp. 2402
-
-
Da Silva, C.O.1
Da Silva, E.C.2
Nascimento, M.A.C.3
-
28
-
-
84961978266
-
-
(b) Toth, A.M.; Liptak, M.D.; Phillips, D.L.; Shields, G.C. J. Chem. Phys. 2001, 114, 4595.
-
(2001)
J. Chem. Phys.
, vol.114
, pp. 4595
-
-
Toth, A.M.1
Liptak, M.D.2
Phillips, D.L.3
Shields, G.C.4
-
30
-
-
84962385867
-
-
Bash, P.A.; Field, M.J.; Davenport, R.C.; Petsko, G.A.; Ringe, D.; Karplus, M. Biochemistry 1991, 30, 5827.
-
(1991)
Biochemistry
, vol.30
, pp. 5827
-
-
Bash, P.A.1
Field, M.J.2
Davenport, R.C.3
Petsko, G.A.4
Ringe, D.5
Karplus, M.6
-
31
-
-
0000846380
-
-
See "methods sections" of the following recent papers: (a) Alhambra, C.; Gao, J. J. Comput. Chem. 2000, 13, 1192.
-
(2000)
J. Comput. Chem.
, vol.13
, pp. 1192
-
-
Alhambra, C.1
Gao, J.2
-
32
-
-
0001664118
-
-
(b) Murphy, R.B.; Philipp, D.M.; Friesner, R.A. J. COMPUT. Chem. 2000, 21, 1442.
-
(2000)
J. Comput. Chem.
, vol.21
, pp. 1442
-
-
Murphy, R.B.1
Philipp, D.M.2
Friesner, R.A.3
-
33
-
-
0034686678
-
-
(c) Liu, H.; Zhang, Y.; Yang, W. J. Am. Chem. Soc. 2000, 122, 6560.
-
(2000)
J. Am. Chem. Soc.
, vol.122
, pp. 6560
-
-
Liu, H.1
Zhang, Y.2
Yang, W.3
-
35
-
-
0035111171
-
-
(e) Billeter, S.R.; Hanser, C.F.W.; Mordasini, T.Z.; Scholten, M.; Thiel, W.; van Gunsteren, W.F. Phys. Chem. Chem. Phys. 2001, 3, 688.
-
(2001)
Phys. Chem. Chem. Phys.
, vol.3
, pp. 688
-
-
Billeter, S.R.1
Hanser, C.F.W.2
Mordasini, T.Z.3
Scholten, M.4
Thiel, W.5
Van Gunsteren, W.F.6
-
37
-
-
0035625887
-
-
(g) Nicoll, R.M.; Hindle, S.A.; MacKenzie, G.; Burton, N.; Hiller, I.A. Theor. Chem. Acc. 2001, 106, 105.
-
(2001)
Theor. Chem. Acc.
, vol.106
, pp. 105
-
-
Nicoll, R.M.1
Hindle, S.A.2
Mackenzie, G.3
Burton, N.4
Hiller, I.A.5
-
38
-
-
0000264059
-
-
(h) Antonczak, S.; Monard, G.; Ruiz-Lopez, M.; Rivail, J.-L. J. Mol. Model. 2000, 6, 527.
-
(2000)
J. Mol. Model.
, vol.6
, pp. 527
-
-
Antonczak, S.1
Monard, G.2
Ruiz-Lopez, M.3
Rivail, J.-L.4
-
39
-
-
11644294259
-
-
(i) Bentzien, J.; Muller, R.P.; Florian, J.; Warshel, A. J. Phys. Chem. B 1998, 102, 2293.
-
(1998)
J. Phys. Chem. B
, vol.102
, pp. 2293
-
-
Bentzien, J.1
Muller, R.P.2
Florian, J.3
Warshel, A.4
-
41
-
-
84986492373
-
-
Thery, V.; Rinaldi, D.; J.-L.; Rivail, J.-L.; Maigret, B.; Ferenczy, G.G.J. Comput. Chem. 1994, 15, 269.
-
(1994)
Comput. Chem.
, vol.15
, pp. 269
-
-
Thery, V.1
Rinaldi, D.2
Rivail, J.-L.3
Maigret, B.4
Ferenczy, G.G.J.5
-
44
-
-
0024538543
-
-
(c) Warshel, A.; Narayszabo, G.; Sussman, F.; Hwang, J.K. Biochemistry 1989, 28, 3629.
-
(1989)
Biochemistry
, vol.28
, pp. 3629
-
-
Warshel, A.1
Narayszabo, G.2
Sussman, F.3
Hwang, J.K.4
-
45
-
-
0029864799
-
-
Bash, P.A.; Ho, L.L.; MacKerell, A.D., Jr.; Levine, D.; Hallstrom, P. Proc. Natl. Acad. Sci. U.S.A. 1996, 93, 3698.
-
(1996)
Proc. Natl. Acad. Sci. U.S.A.
, vol.93
, pp. 3698
-
-
Bash, P.A.1
Ho, L.L.2
MacKerell A.D., Jr.3
Levine, D.4
Hallstrom, P.5
-
46
-
-
0034798239
-
-
Byun, Y.; Mo, Y.R.; Gao, J.L. J. Am. Chem. Soc. 2001, 123, 3974.
-
(2001)
J. Am. Chem. Soc.
, vol.123
, pp. 3974
-
-
Byun, Y.1
Mo, Y.R.2
Gao, J.L.3
-
48
-
-
0032537485
-
-
Forsyth, W.R.; Gilson, W.R.; Antosiewicz, J.; Jaren, O.R.; Robertson, A.D. Biochemistry 1998, 37, 8643.
-
(1998)
Biochemistry
, vol.37
, pp. 8643
-
-
Forsyth, W.R.1
Gilson, W.R.2
Antosiewicz, J.3
Jaren, O.R.4
Robertson, A.D.5
-
49
-
-
0035138053
-
-
(a) Gordon, M.S.; Freitag, M.A.; Bandyopadhyay, P.; Jensen, J.H.; Kairys, V.; Stevens, W.J. J. Phys. Chem. A 2001, 105, 293.
-
(2001)
J. Phys. Chem. A
, vol.105
, pp. 293
-
-
Gordon, M.S.1
Freitag, M.A.2
Bandyopadhyay, P.3
Jensen, J.H.4
Kairys, V.5
Stevens, W.J.6
-
50
-
-
0000138517
-
-
(b) Day, P.N.; Jensen, J.H.; Gordon, M.S.; Webb, S.P.; Stevens, W.J.; Kraus, M.; Garmer, D.; Basch, H.; Cohen, D. J. Chem. Phys. 1996, 105, 1968.
-
(1996)
J. Chem. Phys.
, vol.105
, pp. 1968
-
-
Day, P.N.1
Jensen, J.H.2
Gordon, M.S.3
Webb, S.P.4
Stevens, W.J.5
Kraus, M.6
Garmer, D.7
Basch, H.8
Cohen, D.9
-
52
-
-
0347170005
-
-
Hehre, W.J.; Ditchfield, R.; Pople, J.A. J. Chem. Phys. 1972, 56, 2257.
-
(1972)
J. Chem. Phys.
, vol.56
, pp. 2257
-
-
Hehre, W.J.1
Ditchfield, R.2
Pople, J.A.3
-
53
-
-
84961981991
-
-
Barone, V.; Cossi, M.; Tomasi, J. J. Chem. Phys. 1997, 107, 3210-3221.
-
(1997)
J. Chem. Phys.
, vol.107
, pp. 3210-3221
-
-
Barone, V.1
Cossi, M.2
Tomasi, J.3
-
55
-
-
84962431459
-
-
note
-
(b) The electronic charge density extends into the continuum. Thus, the induced PCM charges arise from a noninteger molecular charge. The ICOMP = 4 procedure scales each induced charge by a factor-related value of the electron density at each tesserae center.
-
-
-
-
56
-
-
84986533294
-
-
Floris, F.M.; Tomasi, J.; Pascual Ahuir, J.L. J. Comput. Chem. 1991, 12, 784-791. The necessary parameters are taken from: Caillet, J.; Claverie, P.; Acta Crystallogr. 1978, B34, 3266-3272.
-
(1991)
J. Comput. Chem.
, vol.12
, pp. 784-791
-
-
Floris, F.M.1
Tomasi, J.2
Pascual Ahuir, J.L.3
-
57
-
-
84986533294
-
-
Floris, F.M.; Tomasi, J.; Pascual Ahuir, J.L. J. Comput. Chem. 1991, 12, 784-791. The necessary parameters are taken from: Caillet, J.; Claverie, P.; Acta Crystallogr. 1978, B34, 3266-3272.
-
(1978)
Acta Crystallogr
, vol.B34
, pp. 3266-3272
-
-
Caillet, J.1
Claverie, P.2
-
59
-
-
0028863028
-
-
Hoogstraten, C.G.; Choe, S.; Westler, W.M.; Markley, J.L. Protein Sci. 1995, 4, 2289.
-
(1995)
Protein Sci.
, vol.4
, pp. 2289
-
-
Hoogstraten, C.G.1
Choe, S.2
Westler, W.M.3
Markley, J.L.4
-
60
-
-
0035912426
-
-
Minikis, R.M.; Kairys, V.; Jensen, J.H. J. Phys. Chem. A 2001, 105, 3829.
-
(2001)
J. Phys. Chem. A
, vol.105
, pp. 3829
-
-
Minikis, R.M.1
Kairys, V.2
Jensen, J.H.3
-
62
-
-
0001002538
-
-
King, H.F.; Stanton, R.E.; King, H.; Wyatt, R.E.; Parr R.G. J. Chem. Phys. 1967, 47, 1936.
-
(1967)
J. Chem. Phys.
, vol.47
, pp. 1936
-
-
King, H.F.1
Stanton, R.E.2
King, H.3
Wyatt, R.E.4
Parr, R.G.5
-
64
-
-
36549103649
-
-
Bagus, P.S.; Hermann, K.; Bauschlicher, C.W., Jr. J. Chem. Phys. 1984, 80, 4378.
-
(1984)
J. Chem. Phys.
, vol.80
, pp. 4378
-
-
Bagus, P.S.1
Hermann, K.2
Bauschlicher C.W., Jr.3
-
68
-
-
84962383337
-
-
Vreven, T.; Mennucci, B.; da Silva, C.O.; Morokuma, K.; Tomasi, J. J. Chem. Phys. 2001, 115, 62.
-
(2001)
J. Chem. Phys.
, vol.115
, pp. 62
-
-
Vreven, T.1
Mennucci, B.2
Da Silva, C.O.3
Morokuma, K.4
Tomasi, J.5
-
71
-
-
84893169025
-
-
Schmidt, M.W.; Baldridge, K.K.; Boatz, J.A.; Elbert, S.T.; Gordon, M.S.; Jensen, J.H.; Koseki, S.; Matsunaga, N.; Nguyen, K.A.; Su, S.; Windus, T.L.; Dupuis, M.; Montgomery, J.A. J. Comput. Chem. 1993, 14, 1347.
-
(1993)
J. Comput. Chem.
, vol.14
, pp. 1347
-
-
Schmidt, M.W.1
Baldridge, K.K.2
Boatz, J.A.3
Elbert, S.T.4
Gordon, M.S.5
Jensen, J.H.6
Koseki, S.7
Matsunaga, N.8
Nguyen, K.A.9
Su, S.10
Windus, T.L.11
Dupuis, M.12
Montgomery, J.A.13
-
72
-
-
84881454506
-
-
Gaussian, Inc.: Pittsburgh, PA
-
Frisch, M.J.; Trucks, G.W.; Schlegel, H.B.; Scuseria, G.E.; Robb, M.A.; Cheeseman, J.R.; Zakrzewski, V.G.; Montgomery, J.A., Jr.; Stratmann, R.E.; Burant, J.C.; Dapprich, S.; Millam, J.M.; Daniels, A.D.; Kudin, K.N.; Strain, M.C.; Farkas, O.; Tomasi, J.; Barone, V.; Cossi, M.; Cammi, R.; Mennucci, B.; Pomelli, C.; Adamo, C.; Clifford, S.; Ochterski, J.; Petersson, G.A.; Ayala, P.Y.; Cui, Q.; Morokuma, K.; Malick, D.K.; Rabuck, A.D.; Raghavachari, K.; Foresman, J.B.; Cioslowski, J.; Ortiz, J.V.; Stefanov, B.B.; Liu, G.; Liashenko, A.; Piskorz, P.; Komaromi, I.; Gomperts, R.; Martin, R.L.; Fox, D.J.; Keith, T.; Al-Laham, M.A.; Peng, C.Y.; Nanayakkara, A.; Gonzalez, C.; Challacombe, M.; Gill, P.M.W.; Johnson, B.G.; Chen, W.; Wong, M.W.; Andres, J.L.; Head-Gordon, M.; Replogle, E.S.; Pople, J.A. Gaussian 98, revision A.6; Gaussian, Inc.: Pittsburgh, PA, 1998.
-
(1998)
Gaussian 98, revision A.6
-
-
Frisch, M.J.1
Trucks, G.W.2
Schlegel, H.B.3
Scuseria, G.E.4
Robb, M.A.5
Cheeseman, J.R.6
Zakrzewski, V.G.7
Montgomery J.A., Jr.8
Stratmann, R.E.9
Burant, J.C.10
Dapprich, S.11
Millam, J.M.12
Daniels, A.D.13
Kudin, K.N.14
Strain, M.C.15
Farkas, O.16
Tomasi, J.17
Barone, V.18
Cossi, M.19
Cammi, R.20
Mennucci, B.21
Pomelli, C.22
Adamo, C.23
Clifford, S.24
Ochterski, J.25
Petersson, G.A.26
Ayala, P.Y.27
Cui, Q.28
Morokuma, K.29
Malick, D.K.30
Rabuck, A.D.31
Raghavachari, K.32
Foresman, J.B.33
Cioslowski, J.34
Ortiz, J.V.35
Stefanov, B.B.36
Liu, G.37
Liashenko, A.38
Piskorz, P.39
Komaromi, I.40
Gomperts, R.41
Martin, R.L.42
Fox, D.J.43
Keith, T.44
Al-Laham, M.A.45
Peng, C.Y.46
Nanayakkara, A.47
Gonzalez, C.48
Challacombe, M.49
Gill, P.M.W.50
Johnson, B.G.51
Chen, W.52
Wong, M.W.53
Andres, J.L.54
Head-Gordon, M.55
Replogle, E.S.56
Pople, J.A.57
more..
-
74
-
-
0035957234
-
-
Onufriev, A.; Case, D.A.; Ullmann, G.M. Biochemistry 2001, 40, 3413.
-
(2001)
Biochemistry
, vol.40
, pp. 3413
-
-
Onufriev, A.1
Case, D.A.2
Ullmann, G.M.3
-
76
-
-
84962403229
-
-
note
-
+ would have to be repulsive.
-
-
-
-
77
-
-
84961976907
-
-
(a) Rega, N.; Cossi, M.; Barone, V. Chem. Phys. Lett. 1998, 293, 221.
-
(1998)
Chem. Phys. Lett.
, vol.293
, pp. 221
-
-
Rega, N.1
Cossi, M.2
Barone, V.3
-
79
-
-
0001246294
-
-
Gosh, A.; Rapp, C.S.; Friesner, R.A. J. Phys. Chem. B 1998, 102, 10983.
-
(1998)
J. Phys. Chem. B
, vol.102
, pp. 10983
-
-
Gosh, A.1
Rapp, C.S.2
Friesner, R.A.3
|