메뉴 건너뛰기




Volumn 584, Issue 1, 2016, Pages 1-6

Synonymous codon usage pattern in glycoprotein gene of rabies virus

Author keywords

Aliphaticity; Aromaticity; Evolution; Mutational pressure; Rabies virus

Indexed keywords

ALANINE; GLYCOPROTEIN; ISOLEUCINE; LEUCINE; VALINE; CODON; VIRUS PROTEIN;

EID: 84961958204     PISSN: 03781119     EISSN: 18790038     Source Type: Journal    
DOI: 10.1016/j.gene.2016.02.047     Document Type: Article
Times cited : (73)

References (39)
  • 1
    • 0036254991 scopus 로고    scopus 로고
    • Estimating human rabies mortality in the United Republic of Tanzania from dog bite injuries
    • Cleaveland S., Fevre E.M., Kaare M., Coleman P.G. Estimating human rabies mortality in the United Republic of Tanzania from dog bite injuries. Bull. World Health Organ. 2002, 80:304-310.
    • (2002) Bull. World Health Organ. , vol.80 , pp. 304-310
    • Cleaveland, S.1    Fevre, E.M.2    Kaare, M.3    Coleman, P.G.4
  • 2
    • 0025276395 scopus 로고
    • Molecular cloning and complete nucleotide sequence of the attenuated rabies virus SAD B19
    • Conzelmann K.K., Cox J.H., Schneider L.G., Thiel H.J. Molecular cloning and complete nucleotide sequence of the attenuated rabies virus SAD B19. Virology 1990, 175:485-499.
    • (1990) Virology , vol.175 , pp. 485-499
    • Conzelmann, K.K.1    Cox, J.H.2    Schneider, L.G.3    Thiel, H.J.4
  • 3
    • 0017683346 scopus 로고
    • Rabies virus glycoprotein. II. Biological and serological characterization
    • Cox J.H., Dietzschold B., Schneider L.G. Rabies virus glycoprotein. II. Biological and serological characterization. Infect. Immun. 1977, 16:754-759.
    • (1977) Infect. Immun. , vol.16 , pp. 754-759
    • Cox, J.H.1    Dietzschold, B.2    Schneider, L.G.3
  • 4
    • 0020356761 scopus 로고
    • Antigenic structure of rabies virus glycoprotein: ordering and immunological characterization of the large CNBr cleavage fragments
    • Dietzschold B., Wiktor T.J., Macfarlan R., Varrichio A. Antigenic structure of rabies virus glycoprotein: ordering and immunological characterization of the large CNBr cleavage fragments. J. Virol. 1982, 44:595-602.
    • (1982) J. Virol. , vol.44 , pp. 595-602
    • Dietzschold, B.1    Wiktor, T.J.2    Macfarlan, R.3    Varrichio, A.4
  • 10
    • 0021958933 scopus 로고
    • Codon usage and tRNA content in unicellular and multicellular organisms
    • Ikemura T. Codon usage and tRNA content in unicellular and multicellular organisms. Mol. Biol. Evol. 1985, 2:13-34.
    • (1985) Mol. Biol. Evol. , vol.2 , pp. 13-34
    • Ikemura, T.1
  • 11
    • 0037372775 scopus 로고    scopus 로고
    • The extent of codon usage bias in human RNA viruses and its evolutionary origin
    • Jenkins G.M., Holmes E.C. The extent of codon usage bias in human RNA viruses and its evolutionary origin. Virus Res. 2003, 92:1-7.
    • (2003) Virus Res. , vol.92 , pp. 1-7
    • Jenkins, G.M.1    Holmes, E.C.2
  • 12
    • 0030569016 scopus 로고    scopus 로고
    • What drives codon choices in human genes?
    • Karlin S., Mrazek J. What drives codon choices in human genes?. J. Mol. Biol. 1996, 262:459-472.
    • (1996) J. Mol. Biol. , vol.262 , pp. 459-472
    • Karlin, S.1    Mrazek, J.2
  • 13
    • 84918572852 scopus 로고    scopus 로고
    • Species based synonymous codon usage in fusion protein gene of Newcastle disease virus
    • Kumar C.S., Kumar S. Species based synonymous codon usage in fusion protein gene of Newcastle disease virus. PLoS One 2014, 9.
    • (2014) PLoS One , vol.9
    • Kumar, C.S.1    Kumar, S.2
  • 14
    • 84940461726 scopus 로고    scopus 로고
    • Analysis of synonymous codon usage in the VP2 protein gene of infectious bursal disease virus
    • Kumar C.S., Hazarika N.M., Kumar S. Analysis of synonymous codon usage in the VP2 protein gene of infectious bursal disease virus. Arch. Virol. 2015, 160:2359-2366.
    • (2015) Arch. Virol. , vol.160 , pp. 2359-2366
    • Kumar, C.S.1    Hazarika, N.M.2    Kumar, S.3
  • 15
    • 0020475449 scopus 로고
    • A simple method for displaying the hydropathic character of a protein
    • Kyte J., Doolittle R.F. A simple method for displaying the hydropathic character of a protein. J. Mol. Biol. 1982, 157:105-132.
    • (1982) J. Mol. Biol. , vol.157 , pp. 105-132
    • Kyte, J.1    Doolittle, R.F.2
  • 16
    • 0345345078 scopus 로고
    • "Two out of three": an alternative method for codon reading
    • Lagerkvist U. "Two out of three": an alternative method for codon reading. Proc. Natl. Acad. Sci. U. S. A. 1978, 75:1759-1762.
    • (1978) Proc. Natl. Acad. Sci. U. S. A. , vol.75 , pp. 1759-1762
    • Lagerkvist, U.1
  • 19
    • 0028088517 scopus 로고
    • Hydrophobicity, expressivity and aromaticity are the major trends of amino-acid usage in 999 Escherichia coli chromosome-encoded genes
    • Lobry J.R., Gautier C. Hydrophobicity, expressivity and aromaticity are the major trends of amino-acid usage in 999 Escherichia coli chromosome-encoded genes. Nucleic Acids Res. 1994, 22:3174-3180.
    • (1994) Nucleic Acids Res. , vol.22 , pp. 3174-3180
    • Lobry, J.R.1    Gautier, C.2
  • 21
    • 84948756955 scopus 로고    scopus 로고
    • Analysis of synonymous codon usage in spike protein gene of infectious bronchitis virus
    • Makhija A., Kumar S. Analysis of synonymous codon usage in spike protein gene of infectious bronchitis virus. Can. J. Microbiol. 2015, 1-7.
    • (2015) Can. J. Microbiol. , pp. 1-7
    • Makhija, A.1    Kumar, S.2
  • 22
    • 0033844505 scopus 로고    scopus 로고
    • The evolution of base composition and phylogenetic inference
    • Mooers A.O., Holmes E.C. The evolution of base composition and phylogenetic inference. Trends Ecol. Evol. 2000, 15:365-369.
    • (2000) Trends Ecol. Evol. , vol.15 , pp. 365-369
    • Mooers, A.O.1    Holmes, E.C.2
  • 23
    • 17344368263 scopus 로고    scopus 로고
    • Pathogenicity of different rabies virus variants inversely correlates with apoptosis and rabies virus glycoprotein expression in infected primary neuron cultures
    • Morimoto K., Hooper D.C., Spitsin S., Koprowski H., Dietzschold B. Pathogenicity of different rabies virus variants inversely correlates with apoptosis and rabies virus glycoprotein expression in infected primary neuron cultures. J. Virol. 1999, 73:510-518.
    • (1999) J. Virol. , vol.73 , pp. 510-518
    • Morimoto, K.1    Hooper, D.C.2    Spitsin, S.3    Koprowski, H.4    Dietzschold, B.5
  • 24
    • 0033822780 scopus 로고    scopus 로고
    • Reinvestigation of the role of the rabies virus glycoprotein in viral pathogenesis using a reverse genetics approach
    • Morimoto K., Foley H.D., McGettigan J.P., Schnell M.J., Dietzschold B. Reinvestigation of the role of the rabies virus glycoprotein in viral pathogenesis using a reverse genetics approach. J. Neurovirol 2000, 6:373-381.
    • (2000) J. Neurovirol , vol.6 , pp. 373-381
    • Morimoto, K.1    Foley, H.D.2    McGettigan, J.P.3    Schnell, M.J.4    Dietzschold, B.5
  • 25
    • 47149088683 scopus 로고    scopus 로고
    • Molecular signature of hypersaline adaptation: insights from genome and proteome composition of halophilic prokaryotes
    • Paul S., Bag S.K., Das S., Harvill E.T., Dutta C. Molecular signature of hypersaline adaptation: insights from genome and proteome composition of halophilic prokaryotes. Genome Biol. 2008, 9:R70.
    • (2008) Genome Biol. , vol.9 , pp. R70
    • Paul, S.1    Bag, S.K.2    Das, S.3    Harvill, E.T.4    Dutta, C.5
  • 26
    • 39749142655 scopus 로고    scopus 로고
    • The glycoprotein and the matrix protein of rabies virus affect pathogenicity by regulating viral replication and facilitating cell-to-cell spread
    • Pulmanausahakul R., Li J., Schnell M.J., Dietzschold B. The glycoprotein and the matrix protein of rabies virus affect pathogenicity by regulating viral replication and facilitating cell-to-cell spread. J. Virol. 2008, 82:2330-2338.
    • (2008) J. Virol. , vol.82 , pp. 2330-2338
    • Pulmanausahakul, R.1    Li, J.2    Schnell, M.J.3    Dietzschold, B.4
  • 27
    • 0022856787 scopus 로고
    • An evolutionary perspective on synonymous codon usage in unicellular organisms
    • Sharp P.M., Li W.H. An evolutionary perspective on synonymous codon usage in unicellular organisms. J. Mol. Evol. 1986, 24:28-38.
    • (1986) J. Mol. Evol. , vol.24 , pp. 28-38
    • Sharp, P.M.1    Li, W.H.2
  • 28
    • 0023650543 scopus 로고
    • The codon Adaptation Index-a measure of directional synonymous codon usage bias, and its potential applications
    • Sharp P.M., Li W.H. The codon Adaptation Index-a measure of directional synonymous codon usage bias, and its potential applications. Nucleic Acids Res. 1987, 15:1281-1295.
    • (1987) Nucleic Acids Res. , vol.15 , pp. 1281-1295
    • Sharp, P.M.1    Li, W.H.2
  • 35
    • 0021472127 scopus 로고
    • Use of monoclonal antibodies to confirm vaccine-induced rabies in ten dogs, two cats, and one fox
    • Whetstone C.A., Bunn T.O., Emmons R.W., Wiktor T.J. Use of monoclonal antibodies to confirm vaccine-induced rabies in ten dogs, two cats, and one fox. J. Am. Vet. Med. Assoc. 1984, 185:285-288.
    • (1984) J. Am. Vet. Med. Assoc. , vol.185 , pp. 285-288
    • Whetstone, C.A.1    Bunn, T.O.2    Emmons, R.W.3    Wiktor, T.J.4
  • 36
    • 78650659163 scopus 로고    scopus 로고
    • Rabies virus (RV) glycoprotein expression levels are not critical for pathogenicity of RV
    • Wirblich C., Schnell M.J. Rabies virus (RV) glycoprotein expression levels are not critical for pathogenicity of RV. J. Virol. 2011, 85:697-704.
    • (2011) J. Virol. , vol.85 , pp. 697-704
    • Wirblich, C.1    Schnell, M.J.2
  • 37
    • 77956395148 scopus 로고    scopus 로고
    • Codon usage bias and the evolution of influenza A viruses. Codon usage biases of influenza virus
    • Wong E.H., Smith D.K., Rabadan R., Peiris M., Poon L.L. Codon usage bias and the evolution of influenza A viruses. Codon usage biases of influenza virus. BMC Evol. Biol. 2010, 10:253.
    • (2010) BMC Evol. Biol. , vol.10 , pp. 253
    • Wong, E.H.1    Smith, D.K.2    Rabadan, R.3    Peiris, M.4    Poon, L.L.5
  • 38
    • 0025318864 scopus 로고
    • The 'effective number of codons' used in a gene
    • Wright F. The 'effective number of codons' used in a gene. Gene 1990, 87:23-29.
    • (1990) Gene , vol.87 , pp. 23-29
    • Wright, F.1


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.