-
1
-
-
0001561048
-
Nitrogen fixation in a coral reef community
-
COI: 1:STN:280:DC%2BC3cvht1GmsQ%3D%3D, PID: 17800402
-
Wiebe WJ, Johannes RE, Webb KL (1975) Nitrogen fixation in a coral reef community. Science 188:257–259. doi:10.1126/science.188.4185.257
-
(1975)
Science
, vol.188
, pp. 257-259
-
-
Wiebe, W.J.1
Johannes, R.E.2
Webb, K.L.3
-
2
-
-
4043135983
-
Discovery of symbiotic nitrogen-fixing cyanobacteria in corals
-
COI: 1:CAS:528:DC%2BD2cXmsVGmt74%3D, PID: 15310901
-
Lesser MP, Mazel CH, Gorbunov MY, Falkowski PG (2004) Discovery of symbiotic nitrogen-fixing cyanobacteria in corals. Science 305:997–1000. doi:10.1126/science.1099128305/5686/997
-
(2004)
Science
, vol.305
, pp. 997-1000
-
-
Lesser, M.P.1
Mazel, C.H.2
Gorbunov, M.Y.3
Falkowski, P.G.4
-
3
-
-
66249145391
-
Coral-associated bacteria and their role in the biogeochemical cycling of sulfur
-
COI: 1:CAS:528:DC%2BD1MXntlShu74%3D, PID: 19346350
-
Raina JB, Tapiolas D, Willis BL, Bourne DG (2009) Coral-associated bacteria and their role in the biogeochemical cycling of sulfur. Appl Environ Microbiol 75:3492–3501. doi:10.1128/AEM.02567-08
-
(2009)
Appl Environ Microbiol
, vol.75
, pp. 3492-3501
-
-
Raina, J.B.1
Tapiolas, D.2
Willis, B.L.3
Bourne, D.G.4
-
4
-
-
33750201132
-
Regulation of microbial populations by coral surface mucus and mucus-associated bacteria
-
COI: 1:CAS:528:DC%2BD28XhtlCisLfO
-
Ritchie KB (2006) Regulation of microbial populations by coral surface mucus and mucus-associated bacteria. Mar Ecol Prog Ser 322:1–14
-
(2006)
Mar Ecol Prog Ser
, vol.322
, pp. 1-14
-
-
Ritchie, K.B.1
-
5
-
-
60349103417
-
Antimicrobial properties of resident coral mucus bacteria of Oculina patagonica
-
COI: 1:CAS:528:DC%2BD1MXjt12jsLk%3D, PID: 19191871
-
Nissimov J, Rosenberg E, Munn CB (2009) Antimicrobial properties of resident coral mucus bacteria of Oculina patagonica. FEMS Microbiol Lett 292:210–215. doi:10.1111/j.1574-6968.2009.01490.x
-
(2009)
FEMS Microbiol Lett
, vol.292
, pp. 210-215
-
-
Nissimov, J.1
Rosenberg, E.2
Munn, C.B.3
-
6
-
-
77950548829
-
How microbial community composition regulates coral disease development
-
PID: 20361023
-
Mao-Jones J, Ritchie KB, Jones LE, Ellner SP (2010) How microbial community composition regulates coral disease development. PLoS Biol 8:e1000345. doi:10.1371/journal.pbio.1000345
-
(2010)
PLoS Biol
, vol.8
, pp. 1000345
-
-
Mao-Jones, J.1
Ritchie, K.B.2
Jones, L.E.3
Ellner, S.P.4
-
7
-
-
73349108433
-
Antagonistic interactions among coral-associated bacteria
-
COI: 1:CAS:528:DC%2BC3cXhvFais7o%3D, PID: 19691500
-
Rypien KL, Ward JR, Azam F (2010) Antagonistic interactions among coral-associated bacteria. Environ Microbiol 12:28–39. doi:10.1111/J.1462-2920.2009.02027.X
-
(2010)
Environ Microbiol
, vol.12
, pp. 28-39
-
-
Rypien, K.L.1
Ward, J.R.2
Azam, F.3
-
9
-
-
0036253488
-
Partitioning of bacterial communities between seawater and healthy, black band diseased, and dead coral surfaces
-
COI: 1:CAS:528:DC%2BD38XjsFGqtrw%3D, PID: 11976091
-
Frias-Lopez J, Zerkle AL, Bonheyo GT, Fouke BW (2002) Partitioning of bacterial communities between seawater and healthy, black band diseased, and dead coral surfaces. Appl Environ Microbiol 68:2214–2228
-
(2002)
Appl Environ Microbiol
, vol.68
, pp. 2214-2228
-
-
Frias-Lopez, J.1
Zerkle, A.L.2
Bonheyo, G.T.3
Fouke, B.W.4
-
10
-
-
8144221778
-
Bacterial community associated with black band disease in corals
-
COI: 1:CAS:528:DC%2BD2cXosl2iu78%3D, PID: 15466538
-
Frias-Lopez J, Klaus JS, Bonheyo GT, Fouke BW (2004) Bacterial community associated with black band disease in corals. Appl Environ Microbiol 70:5955–5962. doi:10.1128/AEM.70.10.5955-5962.2004
-
(2004)
Appl Environ Microbiol
, vol.70
, pp. 5955-5962
-
-
Frias-Lopez, J.1
Klaus, J.S.2
Bonheyo, G.T.3
Fouke, B.W.4
-
11
-
-
67349105701
-
Bacterial diversity and White Plague Disease-associated community changes in the Caribbean coral Montastraea faveolata
-
COI: 1:CAS:528:DC%2BD1MXms12iu7c%3D, PID: 19129866
-
Sunagawa S, Desantis TZ, Piceno YM, Brodie EL, Desalvo MK, Voolstra CR, Weil E, Andersen GL, Medina M (2009) Bacterial diversity and White Plague Disease-associated community changes in the Caribbean coral Montastraea faveolata. ISME J 3:512–521. doi:10.1038/ismej.2008.131
-
(2009)
ISME J
, vol.3
, pp. 512-521
-
-
Sunagawa, S.1
Desantis, T.Z.2
Piceno, Y.M.3
Brodie, E.L.4
Desalvo, M.K.5
Voolstra, C.R.6
Weil, E.7
Andersen, G.L.8
Medina, M.9
-
12
-
-
34248233548
-
Are infectious diseases really killing corals? Alternative interpretations of the experimental and ecological data
-
Lesser MP, Bythell JC, Gates RD, Johnstone RW, Hoegh-Guldberg O (2007) Are infectious diseases really killing corals? Alternative interpretations of the experimental and ecological data. J Exp Mar Biol Ecol 346:36–44
-
(2007)
J Exp Mar Biol Ecol
, vol.346
, pp. 36-44
-
-
Lesser, M.P.1
Bythell, J.C.2
Gates, R.D.3
Johnstone, R.W.4
Hoegh-Guldberg, O.5
-
13
-
-
34247218626
-
The role of microorganisms in coral health, disease and evolution
-
COI: 1:CAS:528:DC%2BD2sXkt1Chsb4%3D, PID: 17384666
-
Rosenberg E, Koren O, Reshef L, Efrony R, Zilber-Rosenberg I (2007) The role of microorganisms in coral health, disease and evolution. Nat Rev Microbiol 5:355–362. doi:10.1038/nrmicro1635
-
(2007)
Nat Rev Microbiol
, vol.5
, pp. 355-362
-
-
Rosenberg, E.1
Koren, O.2
Reshef, L.3
Efrony, R.4
Zilber-Rosenberg, I.5
-
14
-
-
70449704556
-
Microbial disease and the coral holobiont
-
COI: 1:CAS:528:DC%2BD1MXhsV2gsrnN
-
Bourne DG, Garren M, Work TM, Rosenberg E, Smith GW, Harvell CD (2009) Microbial disease and the coral holobiont. Trends in Microbiol 17:554–562
-
(2009)
Trends in Microbiol
, vol.17
, pp. 554-562
-
-
Bourne, D.G.1
Garren, M.2
Work, T.M.3
Rosenberg, E.4
Smith, G.W.5
Harvell, C.D.6
-
15
-
-
77957812944
-
Coral-associated bacterial assemblages: current knowledge and the potential for climate-driven impacts
-
PID: 21558231, 1–13
-
Mouchka ME, Hewson I, Harvell CD (2010) Coral-associated bacterial assemblages: current knowledge and the potential for climate-driven impacts. Integrative and Comparative Biology. doi:10.1093/icb/icq061, 1–13
-
(2010)
Integrative and Comparative Biology
-
-
Mouchka, M.E.1
Hewson, I.2
Harvell, C.D.3
-
16
-
-
43049170465
-
Diseases leading to accelerated decline of reef corals in the largest South Atlantic reef complex (Abrolhos Bank, eastern Brazil)
-
Francini RB, Moura RL, Thompson FL, Reis RM, Kaufman L, Kikuchi RKP, Leao ZM (2008) Diseases leading to accelerated decline of reef corals in the largest South Atlantic reef complex (Abrolhos Bank, eastern Brazil). Mar Pollut Bull 56:1008–1014
-
(2008)
Mar Pollut Bull
, vol.56
, pp. 1008-1014
-
-
Francini, R.B.1
Moura, R.L.2
Thompson, F.L.3
Reis, R.M.4
Kaufman, L.5
Kikuchi, R.K.P.6
Leao, Z.M.7
-
18
-
-
42549097101
-
Re-evaluation of the systematics of the endemic corals of Brazil by molecular data
-
Nunes F, Fukami H, Vollmer SV, Norris RD, Knowlton N (2008) Re-evaluation of the systematics of the endemic corals of Brazil by molecular data. Coral Reefs 27:423–432
-
(2008)
Coral Reefs
, vol.27
, pp. 423-432
-
-
Nunes, F.1
Fukami, H.2
Vollmer, S.V.3
Norris, R.D.4
Knowlton, N.5
-
19
-
-
27744601229
-
A relic coral fauna threatened by global changes and human activities, Eastern Brazil
-
COI: 1:CAS:528:DC%2BD2MXht1SjsL7J, PID: 15913660
-
Leao ZMAN, Kikuchi RKP (2005) A relic coral fauna threatened by global changes and human activities, Eastern Brazil. Mar Pollut Bull 51:599–611
-
(2005)
Mar Pollut Bull
, vol.51
, pp. 599-611
-
-
Leao, Z.M.A.N.1
Kikuchi, R.K.P.2
-
20
-
-
62149110330
-
Bacterial diversity associated with the Brazilian endemic reef coral Mussismilia braziliensis
-
COI: 1:CAS:528:DC%2BD1MXkvFCksbs%3D, PID: 19187136
-
Reis AM, Araujo SD Jr, Moura RL, Francini-Filho RB, Pappas G Jr, Coelho AM, Kruger RH, Thompson FL (2009) Bacterial diversity associated with the Brazilian endemic reef coral Mussismilia braziliensis. J Appl Microbiol 106:1378–1387. doi:10.1111/j.1365-2672.2008.04106.x
-
(2009)
J Appl Microbiol
, vol.106
, pp. 1378-1387
-
-
Reis, A.M.1
Araujo, S.D.2
Moura, R.L.3
Francini-Filho, R.B.4
Pappas, G.5
Coelho, A.M.6
Kruger, R.H.7
Thompson, F.L.8
-
21
-
-
77953324613
-
Bacterial community associated with healthy and diseased reef coral Mussismilia hispida from eastern Brazil
-
PID: 20352207
-
de Castro AP, Araujo SD Jr, Reis AM, Moura RL, Francini-Filho RB, Pappas G Jr, Rodrigues TB, Thompson FL, Kruger RH (2010) Bacterial community associated with healthy and diseased reef coral Mussismilia hispida from eastern Brazil. Microb Ecol 59:658–667. doi:10.1007/s00248-010-9646-1
-
(2010)
Microb Ecol
, vol.59
, pp. 658-667
-
-
de Castro, A.P.1
Araujo, S.D.2
Reis, A.M.3
Moura, R.L.4
Francini-Filho, R.B.5
Pappas, G.6
Rodrigues, T.B.7
Thompson, F.L.8
Kruger, R.H.9
-
22
-
-
35348968286
-
The human microbiome project
-
COI: 1:CAS:528:DC%2BD2sXhtFOjt7nP, PID: 17943116
-
Turnbaugh PJ, Ley RE, Hamady M, Fraser-Liggett CM, Knight R, Gordon JI (2007) The human microbiome project. Nature 449:804–810. doi:10.1038/nature06244
-
(2007)
Nature
, vol.449
, pp. 804-810
-
-
Turnbaugh, P.J.1
Ley, R.E.2
Hamady, M.3
Fraser-Liggett, C.M.4
Knight, R.5
Gordon, J.I.6
-
23
-
-
77950251400
-
A human gut microbial gene catalogue established by metagenomic sequencing
-
COI: 1:CAS:528:DC%2BC3cXislahsLc%3D, PID: 20203603
-
Qin J, Li R, Raes J, Arumugam M, Burgdorf KS, Manichanh C, Nielsen T, Pons N, Levenez F, Yamada T, Mende DR, Li J, Xu J, Li S, Li D, Cao J, Wang B, Liang H, Zheng H, Xie Y, Tap J, Lepage P, Bertalan M, Batto JM, Hansen T, Le Paslier D, Linneberg A, Nielsen HB, Pelletier E, Renault P, Sicheritz-Ponten T, Turner K, Zhu H, Yu C, Jian M, Zhou Y, Li Y, Zhang X, Qin N, Yang H, Wang J, Brunak S, Dore J, Guarner F, Kristiansen K, Pedersen O, Parkhill J, Weissenbach J, Bork P, Ehrlich SD (2010) A human gut microbial gene catalogue established by metagenomic sequencing. Nature 464:59–65. doi:10.1038/nature08821
-
(2010)
Nature
, vol.464
, pp. 59-65
-
-
Qin, J.1
Li, R.2
Raes, J.3
Arumugam, M.4
Burgdorf, K.S.5
Manichanh, C.6
Nielsen, T.7
Pons, N.8
Levenez, F.9
Yamada, T.10
Mende, D.R.11
Li, J.12
Xu, J.13
Li, S.14
Li, D.15
Cao, J.16
Wang, B.17
Liang, H.18
Zheng, H.19
Xie, Y.20
Tap, J.21
Lepage, P.22
Bertalan, M.23
Batto, J.M.24
Hansen, T.25
Le Paslier, D.26
Linneberg, A.27
Nielsen, H.B.28
Pelletier, E.29
Renault, P.30
Sicheritz-Ponten, T.31
Turner, K.32
Zhu, H.33
Yu, C.34
Jian, M.35
Zhou, Y.36
Li, Y.37
Zhang, X.38
Qin, N.39
Yang, H.40
Wang, J.41
Brunak, S.42
Dore, J.43
Guarner, F.44
Kristiansen, K.45
Pedersen, O.46
Parkhill, J.47
Weissenbach, J.48
Bork, P.49
Ehrlich, S.D.50
more..
-
24
-
-
80052970180
-
Evidence for a core gut microbiota in the zebrafish
-
COI: 1:CAS:528:DC%2BC3MXht1WmsLnF, PID: 21472014
-
Roeselers G, Mittge EK, Stephens WZ, Parichy DM, Cavanaugh CM, Guillemin K, Rawls JF (2011) Evidence for a core gut microbiota in the zebrafish. ISME J 5:1595–1608. doi:10.1038/ismej.2011.38
-
(2011)
ISME J
, vol.5
, pp. 1595-1608
-
-
Roeselers, G.1
Mittge, E.K.2
Stephens, W.Z.3
Parichy, D.M.4
Cavanaugh, C.M.5
Guillemin, K.6
Rawls, J.F.7
-
25
-
-
64149087454
-
Diversities of coral-associated bacteria differ with location, but not species, for three acroporid corals on the Great Barrier Reef
-
COI: 1:CAS:528:DC%2BD1MXlsVWgt7Y%3D, PID: 19302548
-
Littman RA, Willis BL, Pfeffer C, Bourne DG (2009) Diversities of coral-associated bacteria differ with location, but not species, for three acroporid corals on the Great Barrier Reef. Fems Microbiol Ecol 68:152–163. doi:10.1111/J.1574-6941.2009.00666.X
-
(2009)
Fems Microbiol Ecol
, vol.68
, pp. 152-163
-
-
Littman, R.A.1
Willis, B.L.2
Pfeffer, C.3
Bourne, D.G.4
-
28
-
-
0001857117
-
16S/23S rRNA sequencing
-
Stackebrandt E, Goodfellow M, (eds), Wiley, New York:
-
Lane DJ (1991) 16S/23S rRNA sequencing. In: Stackebrandt E, Goodfellow M (eds) Nucleic acid techniques in bacterial systematics. Wiley, New York, pp 115–147
-
(1991)
Nucleic acid techniques in bacterial systematics
, pp. 115-147
-
-
Lane, D.J.1
-
29
-
-
0000665623
-
Nucleic acids and classification
-
Goodfellow M, O'Donnell AG, (eds), Academic, London, England:
-
Stackebrandt E, Liesack W (1993) Nucleic acids and classification. In: Goodfellow M, O'Donnell AG (eds) Handbook of new bacterial systematics. Academic, London, England, pp 152–189
-
(1993)
Handbook of new bacterial systematics
, pp. 152-189
-
-
Stackebrandt, E.1
Liesack, W.2
-
30
-
-
0035795219
-
Design and evaluation of PCR primers to amplify bacterial 16S ribosomal DNA fragments used for community fingerprinting
-
COI: 1:CAS:528:DC%2BD3MXhs1eisb0%3D
-
Watanabe K, Kodama Y, Harayama S (2001) Design and evaluation of PCR primers to amplify bacterial 16S ribosomal DNA fragments used for community fingerprinting. J Microbiological Methods 44:253–262. doi:10.1016/S0167-7012(01)00220-2
-
(2001)
J Microbiological Methods
, vol.44
, pp. 253-262
-
-
Watanabe, K.1
Kodama, Y.2
Harayama, S.3
-
31
-
-
5044240973
-
Bellerophon: a program to detect chimeric sequences in multiple sequence alignments
-
COI: 1:CAS:528:DC%2BD2cXnvVOrsbk%3D, PID: 15073015
-
Huber T, Faulkner G, Hugenholtz P (2004) Bellerophon: a program to detect chimeric sequences in multiple sequence alignments. Bioinformatics 20:2317–2319. doi:10.1093/bioinformatics/bth226
-
(2004)
Bioinformatics
, vol.20
, pp. 2317-2319
-
-
Huber, T.1
Faulkner, G.2
Hugenholtz, P.3
-
32
-
-
65549111754
-
Infernal 1.0: inference of RNA alignments
-
COI: 1:CAS:528:DC%2BD1MXlslGgt7w%3D, PID: 19307242
-
Nawrocki EP, Kolbe DL, Eddy SR (2009) Infernal 1.0: inference of RNA alignments. Bioinformatics 25:1335–1337. doi:10.1093/bioinformatics/btp157
-
(2009)
Bioinformatics
, vol.25
, pp. 1335-1337
-
-
Nawrocki, E.P.1
Kolbe, D.L.2
Eddy, S.R.3
-
33
-
-
0242578620
-
A simple, fast, and accurate algorithm to estimate large phylogenies by maximum likelihood
-
PID: 14530136
-
Guindon S, Gascuel O (2003) A simple, fast, and accurate algorithm to estimate large phylogenies by maximum likelihood. Syst Biol 52:696–704
-
(2003)
Syst Biol
, vol.52
, pp. 696-704
-
-
Guindon, S.1
Gascuel, O.2
-
34
-
-
33845873289
-
Interactive Tree Of Life (iTOL): an online tool for phylogenetic tree display and annotation
-
COI: 1:CAS:528:DC%2BD28XhtlGktLzN, PID: 17050570
-
Letunic I, Bork P (2007) Interactive Tree Of Life (iTOL): an online tool for phylogenetic tree display and annotation. Bioinformatics 23:127–128
-
(2007)
Bioinformatics
, vol.23
, pp. 127-128
-
-
Letunic, I.1
Bork, P.2
-
35
-
-
33747073504
-
Microbial diversity in the deep sea and the underexplored “rare biosphere
-
COI: 1:CAS:528:DC%2BD28Xotlyisb4%3D, PID: 16880384
-
Sogin ML, Morrison HG, Huber JA, Welch DM, Huse SM, Neal PR, Arrieta JM, Herndl GJ (2006) Microbial diversity in the deep sea and the underexplored “rare biosphere”. Proc Natl Acad Sci U S A 103:12115–12120. doi:10.1073/pnas.0605127103
-
(2006)
Proc Natl Acad Sci U S A
, vol.103
, pp. 12115-12120
-
-
Sogin, M.L.1
Morrison, H.G.2
Huber, J.A.3
Welch, D.M.4
Huse, S.M.5
Neal, P.R.6
Arrieta, J.M.7
Herndl, G.J.8
-
36
-
-
14344266416
-
Serial analysis of V6 ribosomal sequence tags (SARST-V6): a method for efficient, high-throughput analysis of microbial community composition
-
COI: 1:CAS:528:DC%2BD2MXisV2qur8%3D, PID: 15683396
-
Kysela DT, Palacios C, Sogin ML (2005) Serial analysis of V6 ribosomal sequence tags (SARST-V6): a method for efficient, high-throughput analysis of microbial community composition. Environ Microbiol 7:356–364. doi:10.1111/J.1462-2920.2004.00712.X
-
(2005)
Environ Microbiol
, vol.7
, pp. 356-364
-
-
Kysela, D.T.1
Palacios, C.2
Sogin, M.L.3
-
37
-
-
79961181125
-
UCHIME improves sensitivity and speed of chimera detection
-
COI: 1:CAS:528:DC%2BC3MXhtVSiurvL, PID: 21700674
-
Edgar RC, Haas BJ, Clemente JC, Quince C, Knight R (2011) UCHIME improves sensitivity and speed of chimera detection. Bioinformatics 27:2194–2200. doi:10.1093/bioinformatics/btr381
-
(2011)
Bioinformatics
, vol.27
, pp. 2194-2200
-
-
Edgar, R.C.1
Haas, B.J.2
Clemente, J.C.3
Quince, C.4
Knight, R.5
-
38
-
-
77955251092
-
Ironing out the wrinkles in the rare biosphere through improved OTU clustering
-
COI: 1:CAS:528:DC%2BC3cXhtVegsLnO, PID: 20236171
-
Huse SM, Welch DM, Morrison HG, Sogin ML (2010) Ironing out the wrinkles in the rare biosphere through improved OTU clustering. Environ Microbiol 12:1889–1898. doi:10.1111/j.1462-2920.2010.02193.x
-
(2010)
Environ Microbiol
, vol.12
, pp. 1889-1898
-
-
Huse, S.M.1
Welch, D.M.2
Morrison, H.G.3
Sogin, M.L.4
-
39
-
-
34548293679
-
Naive Bayesian classifier for rapid assignment of rRNA sequences into the new bacterial taxonomy
-
COI: 1:CAS:528:DC%2BD2sXpsleqtrc%3D, PID: 17586664
-
Wang Q, Garrity GM, Tiedje JM, Cole JR (2007) Naive Bayesian classifier for rapid assignment of rRNA sequences into the new bacterial taxonomy. Appl Environ Microbiol 73:5261–5267. doi:10.1128/AEM.00062-07
-
(2007)
Appl Environ Microbiol
, vol.73
, pp. 5261-5267
-
-
Wang, Q.1
Garrity, G.M.2
Tiedje, J.M.3
Cole, J.R.4
-
40
-
-
69249109724
-
Comparative analysis of pyrosequencing and a phylogenetic microarray for exploring microbial community structures in the human distal intestine
-
PID: 19693277
-
Claesson MJ, O'Sullivan O, Wang Q, Nikkila J, Marchesi JR, Smidt H, de Vos WM, Ross RP, O'Toole PW (2009) Comparative analysis of pyrosequencing and a phylogenetic microarray for exploring microbial community structures in the human distal intestine. PLoS ONE 4:e6669. doi:10.1371/journal.pone.0006669
-
(2009)
PLoS ONE
, vol.4
, pp. 6669
-
-
Claesson, M.J.1
O'Sullivan, O.2
Wang, Q.3
Nikkila, J.4
Marchesi, J.R.5
Smidt, H.6
de Vos, W.M.7
Ross, R.P.8
O'Toole, P.W.9
-
41
-
-
72949107142
-
Introducing mothur: open-source, platform-independent, community-supported software for describing and comparing microbial communities
-
COI: 1:CAS:528:DC%2BC3cXis1yltw%3D%3D, PID: 19801464
-
Schloss PD, Westcott SL, Ryabin T, Hall JR, Hartmann M, Hollister EB, Lesniewski RA, Oakley BB, Parks DH, Robinson CJ, Sahl JW, Stres B, Thallinger GG, Van Horn DJ, Weber CF (2009) Introducing mothur: open-source, platform-independent, community-supported software for describing and comparing microbial communities. Appl Environ Microbiol 75:7537–7541. doi:10.1128/AEM.01541-09
-
(2009)
Appl Environ Microbiol
, vol.75
, pp. 7537-7541
-
-
Schloss, P.D.1
Westcott, S.L.2
Ryabin, T.3
Hall, J.R.4
Hartmann, M.5
Hollister, E.B.6
Lesniewski, R.A.7
Oakley, B.B.8
Parks, D.H.9
Robinson, C.J.10
Sahl, J.W.11
Stres, B.12
Thallinger, G.G.13
Van Horn, D.J.14
Weber, C.F.15
-
42
-
-
33644843833
-
Quantifying the roles of immigration and chance in shaping prokaryote community structure
-
PID: 16584484
-
Sloan WT, Lunn M, Woodcock S, Head IM, Nee S, Curtis TP (2006) Quantifying the roles of immigration and chance in shaping prokaryote community structure. Environ Microbiol 8:732–740
-
(2006)
Environ Microbiol
, vol.8
, pp. 732-740
-
-
Sloan, W.T.1
Lunn, M.2
Woodcock, S.3
Head, I.M.4
Nee, S.5
Curtis, T.P.6
-
43
-
-
84961342727
-
-
Friedman J (2012) PySurvey 0.1.2: Interactive analysis of survey data, Cambridge
-
Friedman J (2012) PySurvey 0.1.2: Interactive analysis of survey data. URL http://yonatanfriedman.com/docs/survey/index.html. Cambridge.
-
-
-
-
44
-
-
33646827806
-
Multivariate dispersion as a measure of beta diversity
-
PID: 16706913
-
Anderson MJ, Ellingsen KE, McArdle BH (2006) Multivariate dispersion as a measure of beta diversity. Ecol Lett 9:683–693
-
(2006)
Ecol Lett
, vol.9
, pp. 683-693
-
-
Anderson, M.J.1
Ellingsen, K.E.2
McArdle, B.H.3
-
46
-
-
0027804103
-
Non-parametric multivariate analyses of changes in community structure
-
Clarke KR (1993) Non-parametric multivariate analyses of changes in community structure. Aust Ecol 18:117–143
-
(1993)
Aust Ecol
, vol.18
, pp. 117-143
-
-
Clarke, K.R.1
-
48
-
-
34247846283
-
Coral microbial communities, zooxanthellae and mucus along gradients of seawater depth and coastal pollution
-
COI: 1:CAS:528:DC%2BD2sXlsFWnurk%3D, PID: 17472641
-
Klaus JS, Janse I, Heikoop JM, Sanford RA, Fouke BW (2007) Coral microbial communities, zooxanthellae and mucus along gradients of seawater depth and coastal pollution. Environ Microbiol 9:1291–1305. doi:10.1111/J.1462-2920.2007.01249.X
-
(2007)
Environ Microbiol
, vol.9
, pp. 1291-1305
-
-
Klaus, J.S.1
Janse, I.2
Heikoop, J.M.3
Sanford, R.A.4
Fouke, B.W.5
-
49
-
-
77949674527
-
Threatened corals provide underexplored microbial habitats
-
Sunagawa S, Woodley CM, Medina M (2010) Threatened corals provide underexplored microbial habitats. PLoS ONE 5:1–7. doi:10.1371/journal.pone.0009554
-
(2010)
PLoS ONE
, vol.5
, pp. 1-7
-
-
Sunagawa, S.1
Woodley, C.M.2
Medina, M.3
-
50
-
-
0001463548
-
Non-parametric estimation of the number of classes in a population
-
Chao A (1984) Non-parametric estimation of the number of classes in a population. Scand J Stat 11:265–270
-
(1984)
Scand J Stat
, vol.11
, pp. 265-270
-
-
Chao, A.1
-
51
-
-
84945495487
-
Estimating the number of classes via sample coverage
-
Chao A, Lee SM (1992) Estimating the number of classes via sample coverage. J Am Stat Assoc 87:210–217
-
(1992)
J Am Stat Assoc
, vol.87
, pp. 210-217
-
-
Chao, A.1
Lee, S.M.2
-
52
-
-
77957888370
-
Stopping rules and estimation for recapture debugging with unequal failure rates
-
Chao A, Ma MC, Yang MCK (1993) Stopping rules and estimation for recapture debugging with unequal failure rates. Biometrika 80:193–201
-
(1993)
Biometrika
, vol.80
, pp. 193-201
-
-
Chao, A.1
Ma, M.C.2
Yang, M.C.K.3
-
54
-
-
43449117763
-
Temporal scaling of bacterial taxa is influenced by both stochastic and deterministic ecological factors
-
PID: 18205822
-
van der Gast CJ, Ager D, Lilley AK (2008) Temporal scaling of bacterial taxa is influenced by both stochastic and deterministic ecological factors. Environ Microbiol 10:1411–1418
-
(2008)
Environ Microbiol
, vol.10
, pp. 1411-1418
-
-
van der Gast, C.J.1
Ager, D.2
Lilley, A.K.3
-
55
-
-
84889597437
-
Bacterial communities associated with three Brazilian endemic reef corals (Mussismilia spp.) in a coastal reef of the Abrolhos shelf
-
de Castro AP, Araujo SD, Reis AMM, Pompeu M, Hatay M, de Moura RL, Francini-Filho RB, Thompson FL, Kruger RH (2013) Bacterial communities associated with three Brazilian endemic reef corals (Mussismilia spp.) in a coastal reef of the Abrolhos shelf. Cont Shelf Res 70:135–139
-
(2013)
Cont Shelf Res
, vol.70
, pp. 135-139
-
-
de Castro, A.P.1
Araujo, S.D.2
Reis, A.M.M.3
Pompeu, M.4
Hatay, M.5
de Moura, R.L.6
Francini-Filho, R.B.7
Thompson, F.L.8
Kruger, R.H.9
-
56
-
-
33750971130
-
Phototrophic microendoliths bloom during coral “white syndrome
-
Fine M, Roff G, Ainsworth TD, Hoegh-Guldberg O (2006) Phototrophic microendoliths bloom during coral “white syndrome”. Coral Reefs 25:577–581. doi:10.1007/S00338-006-0143-4
-
(2006)
Coral Reefs
, vol.25
, pp. 577-581
-
-
Fine, M.1
Roff, G.2
Ainsworth, T.D.3
Hoegh-Guldberg, O.4
-
57
-
-
77954930649
-
Periodic endolithic algal blooms in Montastraea faveolata corals may represent periods of low-level stress
-
Carilli JE, Godfrey J, Norris RD, Sandin SA, Smith JE (2010) Periodic endolithic algal blooms in Montastraea faveolata corals may represent periods of low-level stress. Bull Mar Sci 86:709–718
-
(2010)
Bull Mar Sci
, vol.86
, pp. 709-718
-
-
Carilli, J.E.1
Godfrey, J.2
Norris, R.D.3
Sandin, S.A.4
Smith, J.E.5
-
58
-
-
84980225963
-
2 species of chlorophyte genus Ostreobium from skeletons of Atlantic and Caribbean reef corals
-
Lukas KJ (1974) 2 species of chlorophyte genus Ostreobium from skeletons of Atlantic and Caribbean reef corals. J Phycol 10:331–335. doi:10.1111/J.0022-3646.1974.00331.X
-
(1974)
J Phycol
, vol.10
, pp. 331-335
-
-
Lukas, K.J.1
-
59
-
-
85027955178
-
Genotypic diversity and distribution of Ostreobium quekettii within scleractinian corals
-
Gutner-Hoch E, Fine M (2011) Genotypic diversity and distribution of Ostreobium quekettii within scleractinian corals. Coral Reefs 30(Gutner-Hoch E, Fine M):643–650. doi:10.1007/S00338-011-0750-6
-
(2011)
Coral Reefs
, vol.30
, Issue.Gutner-Hoch E, Fine M
, pp. 643-650
-
-
Gutner-Hoch, E.1
Fine, M.2
-
60
-
-
79951814095
-
Changes in sulfate-reducing bacterial populations during the onset of black band disease
-
COI: 1:CAS:528:DC%2BC3MXhvFWhsL4%3D, PID: 20811471
-
Bourne DG, Muirhead A, Sato Y (2011) Changes in sulfate-reducing bacterial populations during the onset of black band disease. ISME J 5:559–564. doi:10.1038/ismej.2010.143
-
(2011)
ISME J
, vol.5
, pp. 559-564
-
-
Bourne, D.G.1
Muirhead, A.2
Sato, Y.3
-
61
-
-
33244497150
-
Thalassomonas loyana sp nov, a causative agent of the white plague-like disease of corals on the Eilat coral reef
-
COI: 1:CAS:528:DC%2BD28XislKhtLo%3D
-
Thompson FL, Barash Y, Sawabe T, Sharon G, Swings J, Rosenberg E (2006) Thalassomonas loyana sp nov, a causative agent of the white plague-like disease of corals on the Eilat coral reef. Int J Syst and Evol Microbiol 56:365–368. doi:10.1099/Ijs.0.63800-0
-
(2006)
Int J Syst and Evol Microbiol
, vol.56
, pp. 365-368
-
-
Thompson, F.L.1
Barash, Y.2
Sawabe, T.3
Sharon, G.4
Swings, J.5
Rosenberg, E.6
-
62
-
-
0346106077
-
Vibrio coralliilyticus sp nov, a temperature-dependent pathogen of the coral Pocillopora damicornis
-
COI: 1:CAS:528:DC%2BD3sXitVSnurw%3D
-
Ben-Haim Y, Thompson FL, Thompson CC, Cnockaert MC, Hoste B, Swings J, Rosenberg E (2003) Vibrio coralliilyticus sp nov., a temperature-dependent pathogen of the coral Pocillopora damicornis. Int J of Syst Evol Microbiol 53:309–315
-
(2003)
Int J of Syst Evol Microbiol
, vol.53
, pp. 309-315
-
-
Ben-Haim, Y.1
Thompson, F.L.2
Thompson, C.C.3
Cnockaert, M.C.4
Hoste, B.5
Swings, J.6
Rosenberg, E.7
-
63
-
-
8744276542
-
Relationship of Vibrio species infection and elevated temperatures to yellow blotch/band disease in Caribbean corals
-
COI: 1:CAS:528:DC%2BD2cXhtVSju7rI, PID: 15528553
-
Cervino JM, Hayes RL, Polson SW, Polson SC, Goreau TJ, Martinez RJ, Smith GW (2004) Relationship of Vibrio species infection and elevated temperatures to yellow blotch/band disease in Caribbean corals. Appl Environ Microbiol 70:6855–6864. doi:10.1128/AEM.70.11.6855-6864.2004
-
(2004)
Appl Environ Microbiol
, vol.70
, pp. 6855-6864
-
-
Cervino, J.M.1
Hayes, R.L.2
Polson, S.W.3
Polson, S.C.4
Goreau, T.J.5
Martinez, R.J.6
Smith, G.W.7
-
64
-
-
49149103522
-
Coral pathogens identified for White Syndrome (WS) epizootics in the Indo-Pacific
-
PID: 18560584
-
Sussman M, Willis BL, Victor S, Bourne DG (2008) Coral pathogens identified for White Syndrome (WS) epizootics in the Indo-Pacific. PLoS ONE 3:e2393. doi:10.1371/journal.pone.0002393
-
(2008)
PLoS ONE
, vol.3
, pp. 2393
-
-
Sussman, M.1
Willis, B.L.2
Victor, S.3
Bourne, D.G.4
-
65
-
-
80052069206
-
Genomic and proteomic analyses of the coral pathogen Vibrio coralliilyticus reveal a diverse virulence repertoire
-
PID: 21451583
-
Santos Ede O, Alves N Jr, Dias GM, Mazotto AM, Vermelho A, Vora GJ, Wilson B, Beltran VH, Bourne DG, Le Roux F, Thompson FL (2011) Genomic and proteomic analyses of the coral pathogen Vibrio coralliilyticus reveal a diverse virulence repertoire. ISME J 5:1471–1483. doi:10.1038/ismej.2011.19
-
(2011)
ISME J
, vol.5
, pp. 1471-1483
-
-
Santos Ede, O.1
Alves, N.2
Dias, G.M.3
Mazotto, A.M.4
Vermelho, A.5
Vora, G.J.6
Wilson, B.7
Beltran, V.H.8
Bourne, D.G.9
Le Roux, F.10
Thompson, F.L.11
-
66
-
-
33746021304
-
Coexistence of the niche and neutral perspectives in community ecology
-
PID: 16869414
-
Leibold MA, McPeek MA (2006) Coexistence of the niche and neutral perspectives in community ecology. Ecology 87:1399–1410
-
(2006)
Ecology
, vol.87
, pp. 1399-1410
-
-
Leibold, M.A.1
McPeek, M.A.2
-
67
-
-
77957270949
-
Combined niche and neutral effects in a microbial wastewater treatment community
-
COI: 1:CAS:528:DC%2BC3cXhtFaqurnE, PID: 20705897
-
Ofiteru ID, Lunn M, Curtis TP, Wells GF, Criddle CS, Francis CA, Sloan WT (2010) Combined niche and neutral effects in a microbial wastewater treatment community. Proc Natl Acad Sci U S A 107:15345–15350. doi:10.1073/pnas.1000604107
-
(2010)
Proc Natl Acad Sci U S A
, vol.107
, pp. 15345-15350
-
-
Ofiteru, I.D.1
Lunn, M.2
Curtis, T.P.3
Wells, G.F.4
Criddle, C.S.5
Francis, C.A.6
Sloan, W.T.7
-
68
-
-
77149148775
-
Relative roles of niche and neutral processes in structuring a soil microbial community
-
PID: 19924158
-
Dumbrell AJ, Nelson M, Helgason T, Dytham C, Fitter AH (2010) Relative roles of niche and neutral processes in structuring a soil microbial community. ISME J 4:337–345. doi:10.1038/ismej.2009.122
-
(2010)
ISME J
, vol.4
, pp. 337-345
-
-
Dumbrell, A.J.1
Nelson, M.2
Helgason, T.3
Dytham, C.4
Fitter, A.H.5
-
69
-
-
84862555494
-
Quantification of the relative roles of niche and neutral processes in structuring gastrointestinal microbiomes
-
COI: 1:CAS:528:DC%2BC38XhtVKksLrN, PID: 22615407
-
Jeraldo P, Sipos M, Chia N, Brulc JM, Dhillon AS, Konkel ME, Larson CL, Nelson KE, Qu A, Schook LB, Yang F, White BA, Goldenfeld N (2012) Quantification of the relative roles of niche and neutral processes in structuring gastrointestinal microbiomes. Proc Natl Acad Sci U S A 109:9692–9698. doi:10.1073/pnas.1206721109
-
(2012)
Proc Natl Acad Sci U S A
, vol.109
, pp. 9692-9698
-
-
Jeraldo, P.1
Sipos, M.2
Chia, N.3
Brulc, J.M.4
Dhillon, A.S.5
Konkel, M.E.6
Larson, C.L.7
Nelson, K.E.8
Qu, A.9
Schook, L.B.10
Yang, F.11
White, B.A.12
Goldenfeld, N.13
-
70
-
-
84863472497
-
A crypt-specific core microbiota resides in the mouse colon
-
Pedron T, Mulet C, Dauga C, Frangeul L, Chervaux C, Grompone G, Sansonetti PJ (2011) A crypt-specific core microbiota resides in the mouse colon. MBio 3:116–112. doi:10.1128/mBio.00116-12
-
(2011)
MBio
, vol.3
, pp. 112-116
-
-
Pedron, T.1
Mulet, C.2
Dauga, C.3
Frangeul, L.4
Chervaux, C.5
Grompone, G.6
Sansonetti, P.J.7
-
71
-
-
79951811014
-
Unveiling an abundant core microbiota in the human adult colon by a phylogroup-independent searching approach
-
PID: 20740026
-
Sekelja M, Berget I, Naes T, Rudi K (2011) Unveiling an abundant core microbiota in the human adult colon by a phylogroup-independent searching approach. ISME J 5:519–531. doi:10.1038/ismej.2010.129
-
(2011)
ISME J
, vol.5
, pp. 519-531
-
-
Sekelja, M.1
Berget, I.2
Naes, T.3
Rudi, K.4
-
72
-
-
84857121586
-
Assessing the complex sponge microbiota: core, variable and species-specific bacterial communities in marine sponges
-
COI: 1:CAS:528:DC%2BC38XisVGgt7w%3D, PID: 21993395
-
Schmitt S, Tsai P, Bell J, Fromont J, Ilan M, Lindquist N, Perez T, Rodrigo A, Schupp PJ, Vacelet J, Webster N, Hentschel U, Taylor MW (2012) Assessing the complex sponge microbiota: core, variable and species-specific bacterial communities in marine sponges. ISME J 6:564–576. doi:10.1038/ismej.2011.116
-
(2012)
ISME J
, vol.6
, pp. 564-576
-
-
Schmitt, S.1
Tsai, P.2
Bell, J.3
Fromont, J.4
Ilan, M.5
Lindquist, N.6
Perez, T.7
Rodrigo, A.8
Schupp, P.J.9
Vacelet, J.10
Webster, N.11
Hentschel, U.12
Taylor, M.W.13
-
73
-
-
84881005763
-
Aquacultured rainbow trout (Oncorhynchus mykiss) possess a large core intestinal microbiota that is resistant to variation in diet and rearing density
-
COI: 1:CAS:528:DC%2BC3sXht1artbjK, PID: 23770898
-
Wong S, Waldrop T, Summerfelt S, Davidson J, Barrows F, Kenney PB, Welch T, Wiens GD, Snekvik K, Rawls JF, Good C (2013) Aquacultured rainbow trout (Oncorhynchus mykiss) possess a large core intestinal microbiota that is resistant to variation in diet and rearing density. Appl Environ Microbiol 79:4974–4984. doi:10.1128/AEM.00924-13
-
(2013)
Appl Environ Microbiol
, vol.79
, pp. 4974-4984
-
-
Wong, S.1
Waldrop, T.2
Summerfelt, S.3
Davidson, J.4
Barrows, F.5
Kenney, P.B.6
Welch, T.7
Wiens, G.D.8
Snekvik, K.9
Rawls, J.F.10
Good, C.11
-
74
-
-
84898879957
-
The gut of geographically disparate Ciona intestinalis harbors a core microbiota
-
PID: 24695540
-
Dishaw LJ, Flores-Torres J, Lax S, Gemayel K, Leigh B, Melillo D, Mueller MG, Natale L, Zucchetti I, De Santis R, Pinto MR, Litman GW, Gilbert JA (2014) The gut of geographically disparate Ciona intestinalis harbors a core microbiota. Plos One 9:e93386. doi:10.1371/journal.pone.0093386
-
(2014)
Plos One
, vol.9
, pp. 93386
-
-
Dishaw, L.J.1
Flores-Torres, J.2
Lax, S.3
Gemayel, K.4
Leigh, B.5
Melillo, D.6
Mueller, M.G.7
Natale, L.8
Zucchetti, I.9
De Santis, R.10
Pinto, M.R.11
Litman, G.W.12
Gilbert, J.A.13
-
75
-
-
79953029749
-
Composition, uniqueness and variability of the epiphytic bacterial community of the green alga Ulva australis
-
COI: 1:CAS:528:DC%2BC3MXjs1Cksr4%3D, PID: 21048801
-
Burke C, Thomas T, Lewis M, Steinberg P, Kjelleberg S (2011) Composition, uniqueness and variability of the epiphytic bacterial community of the green alga Ulva australis. ISME J 5:590–600. doi:10.1038/ismej.2010.164
-
(2011)
ISME J
, vol.5
, pp. 590-600
-
-
Burke, C.1
Thomas, T.2
Lewis, M.3
Steinberg, P.4
Kjelleberg, S.5
-
76
-
-
84884675234
-
The inconstant gut microbiota of Drosophila species revealed by 16S rRNA gene analysis
-
COI: 1:CAS:528:DC%2BC3sXhsFens7jO, PID: 23719154
-
Wong AC, Chaston JM, Douglas AE (2013) The inconstant gut microbiota of Drosophila species revealed by 16S rRNA gene analysis. ISME J 7:1922–1932. doi:10.1038/ismej.2013.86
-
(2013)
ISME J
, vol.7
, pp. 1922-1932
-
-
Wong, A.C.1
Chaston, J.M.2
Douglas, A.E.3
-
77
-
-
84855294263
-
Beyond the Venn diagram: the hunt for a core microbiome
-
COI: 1:CAS:528:DC%2BC38XislWntbk%3D, PID: 22004523
-
Shade A, Handelsman J (2012) Beyond the Venn diagram: the hunt for a core microbiome. Environ Microbiol 14:4–12. doi:10.1111/j.1462-2920.2011.02585.x
-
(2012)
Environ Microbiol
, vol.14
, pp. 4-12
-
-
Shade, A.1
Handelsman, J.2
-
78
-
-
10644246730
-
A taxa-area relationship for bacteria
-
COI: 1:CAS:528:DC%2BD2cXhtVGmtLnE, PID: 15592412
-
Horner-Devine MC, Lage M, Hughes JB, Bohannan BJ (2004) A taxa-area relationship for bacteria. Nature 432:750–753. doi:10.1038/nature03073
-
(2004)
Nature
, vol.432
, pp. 750-753
-
-
Horner-Devine, M.C.1
Lage, M.2
Hughes, J.B.3
Bohannan, B.J.4
-
79
-
-
22544432221
-
Larger islands house more bacterial taxa
-
COI: 1:CAS:528:DC%2BD2MXls1Sku7w%3D, PID: 15976296
-
Bell T, Ager D, Song JI, Newman JA, Thompson IP, Lilley AK, van der Gast CJ (2005) Larger islands house more bacterial taxa. Science 308:1884. doi:10.1126/science.1111318
-
(2005)
Science
, vol.308
, pp. 1884
-
-
Bell, T.1
Ager, D.2
Song, J.I.3
Newman, J.A.4
Thompson, I.P.5
Lilley, A.K.6
van der Gast, C.J.7
|