메뉴 건너뛰기




Volumn 28, Issue 2, 2016, Pages 1387-1390

Development of Saccharina japonica genomic SSR markers using next-generation sequencing

Author keywords

Microsatellite; Phaeophyta; Saccharina japonica; Simple sequence repeats

Indexed keywords


EID: 84961127511     PISSN: 09218971     EISSN: 15735176     Source Type: Journal    
DOI: 10.1007/s10811-015-0643-0     Document Type: Article
Times cited : (18)

References (23)
  • 1
    • 80755129047 scopus 로고    scopus 로고
    • Development of novel microsatellites in Lagerstroemia indica and DNA fingerprinting in Chinese Lagerstroemia cultivars
    • Cai M, Pan HT, Wang XF, He D, Wang XY, Wang XJ, Zhang QX (2011) Development of novel microsatellites in Lagerstroemia indica and DNA fingerprinting in Chinese Lagerstroemia cultivars. Sci Hortic 131:88–94
    • (2011) Sci Hortic , vol.131 , pp. 88-94
    • Cai, M.1    Pan, H.T.2    Wang, X.F.3    He, D.4    Wang, X.Y.5    Wang, X.J.6    Zhang, Q.X.7
  • 2
    • 82955195441 scopus 로고    scopus 로고
    • Microsatellite development in Rhodophyta using high-throughput sequence data
    • Couceiro L, Maneiro I, Mauger S, Valero M, Ruiz JM, Barreiro R (2011) Microsatellite development in Rhodophyta using high-throughput sequence data. J Phycol 47:1258–1265
    • (2011) J Phycol , vol.47 , pp. 1258-1265
    • Couceiro, L.1    Maneiro, I.2    Mauger, S.3    Valero, M.4    Ruiz, J.M.5    Barreiro, R.6
  • 3
    • 85031874251 scopus 로고    scopus 로고
    • FAO (2012) Fisheries and aquaculture information and statistics service
    • FAO (2012) Fisheries and aquaculture information and statistics service http://faostat3.fao.org/home/index.html
  • 4
    • 22744439827 scopus 로고    scopus 로고
    • Assessing the germplasm of Laminaria (Phaeophyceae) with random amplified polymorphic DNA (RAPD) method
    • He Y, Zou Y, Wang X, Zheng Z, Zhang D, Duan D (2003) Assessing the germplasm of Laminaria (Phaeophyceae) with random amplified polymorphic DNA (RAPD) method. Chin J Oceanol Limnol 21:141–148
    • (2003) Chin J Oceanol Limnol , vol.21 , pp. 141-148
    • He, Y.1    Zou, Y.2    Wang, X.3    Zheng, Z.4    Zhang, D.5    Duan, D.6
  • 5
    • 84861337742 scopus 로고    scopus 로고
    • Development of simple sequence repeat (SSR) markers from a genome survey of Chinese bayberry (Myrica rubra)
    • COI: 1:CAS:528:DC%2BC3sXht1yrtb0%3D, PID: 22621340
    • Jiao Y, Jia HM, Li XW, Chai ML, Jia HJ, Chen Z, Wang GY, Chai CY, van de Weg E, Gao ZS (2012) Development of simple sequence repeat (SSR) markers from a genome survey of Chinese bayberry (Myrica rubra). BMC Genomics 13:201
    • (2012) BMC Genomics , vol.13 , pp. 201
    • Jiao, Y.1    Jia, H.M.2    Li, X.W.3    Chai, M.L.4    Jia, H.J.5    Chen, Z.6    Wang, G.Y.7    Chai, C.Y.8    van de Weg, E.9    Gao, Z.S.10
  • 6
    • 78650518016 scopus 로고    scopus 로고
    • Microsatellite markers: an overview of the recent progress in plants
    • COI: 1:CAS:528:DC%2BC3cXhs1WmsL7O
    • Kalia RK, Rai MK, Kalia S, Singh R, Dhawan AK (2011) Microsatellite markers: an overview of the recent progress in plants. Euphytica 177:309–334
    • (2011) Euphytica , vol.177 , pp. 309-334
    • Kalia, R.K.1    Rai, M.K.2    Kalia, S.3    Singh, R.4    Dhawan, A.K.5
  • 7
    • 0000635633 scopus 로고
    • Quantification of nuclear-DNA and G-C content in marine macroalgae by flow-cytometry of isolated-nuclei
    • Le Gall Y, Brown S, Marie D, Mejjad M, Kloareg B (1993) Quantification of nuclear-DNA and G-C content in marine macroalgae by flow-cytometry of isolated-nuclei. Protoplasma 173:123–132
    • (1993) Protoplasma , vol.173 , pp. 123-132
    • Le Gall, Y.1    Brown, S.2    Marie, D.3    Mejjad, M.4    Kloareg, B.5
  • 8
    • 70350144791 scopus 로고    scopus 로고
    • Genetic mapping of the Laminaria japonica (Laminarales, Phaeophyta) using amplified fragment length polymorphism markers
    • COI: 1:CAS:528:DC%2BD1MXhsVyhs7zL
    • Liu FL, Wang XL, Liu JD, Fu WD, Duan DL, Yang YX (2009) Genetic mapping of the Laminaria japonica (Laminarales, Phaeophyta) using amplified fragment length polymorphism markers. J Phycol 45:1228–1233
    • (2009) J Phycol , vol.45 , pp. 1228-1233
    • Liu, F.L.1    Wang, X.L.2    Liu, J.D.3    Fu, W.D.4    Duan, D.L.5    Yang, Y.X.6
  • 9
    • 77954957711 scopus 로고    scopus 로고
    • QTL mapping for frond length and width in Laminaria japonica aresch (Laminarales, Phaeophyta) using AFLP and SSR markers
    • COI: 1:CAS:528:DC%2BC3cXpt1Ojsb4%3D, PID: 19768507
    • Liu FL, Shao ZR, Zhang HN, Liu JD, Wang XL, Duan DL (2010a) QTL mapping for frond length and width in Laminaria japonica aresch (Laminarales, Phaeophyta) using AFLP and SSR markers. Mar Biotechnol 12:386–394
    • (2010) Mar Biotechnol , vol.12 , pp. 386-394
    • Liu, F.L.1    Shao, Z.R.2    Zhang, H.N.3    Liu, J.D.4    Wang, X.L.5    Duan, D.L.6
  • 10
    • 77349106683 scopus 로고    scopus 로고
    • Development of expressed sequence tag-derived microsatellite markers for Saccharina (Laminaria) japonica
    • COI: 1:CAS:528:DC%2BC3cXhslKks78%3D
    • Liu FL, Wang XL, Yao JT, Fu WD, Duan DL (2010b) Development of expressed sequence tag-derived microsatellite markers for Saccharina (Laminaria) japonica. J Appl Phycol 22:109–111
    • (2010) J Appl Phycol , vol.22 , pp. 109-111
    • Liu, F.L.1    Wang, X.L.2    Yao, J.T.3    Fu, W.D.4    Duan, D.L.5
  • 11
    • 84864047188 scopus 로고    scopus 로고
    • Genetic diversity and structure within and between wild and cultivated Saccharina japonica (Laminariales, Phaeophyta) revealed by SSR markers
    • Liu FL, Yao JT, Wang XL, Repnikova A, Galanin DA, Duan DL (2012) Genetic diversity and structure within and between wild and cultivated Saccharina japonica (Laminariales, Phaeophyta) revealed by SSR markers. Aquaculture 358:139–145
    • (2012) Aquaculture , vol.358 , pp. 139-145
    • Liu, F.L.1    Yao, J.T.2    Wang, X.L.3    Repnikova, A.4    Galanin, D.A.5    Duan, D.L.6
  • 12
    • 84942887758 scopus 로고    scopus 로고
    • SOAPdenovo2: an empirically improved memory-efficient short-read de novo assembler
    • PID: 23587118
    • Luo R, Liu B, Xie Y et al (2012) SOAPdenovo2: an empirically improved memory-efficient short-read de novo assembler. GigaScience 1:18
    • (2012) GigaScience , vol.1 , pp. 18
    • Luo, R.1    Liu, B.2    Xie, Y.3
  • 13
    • 0032077236 scopus 로고    scopus 로고
    • Statistical confidence for likelihood-based paternity inference in natural populations
    • Marshall TC, Slate J, Kruuk LEB, Pemberton JM (1998) Statistical confidence for likelihood-based paternity inference in natural populations. Mol Ecol l7:639–655
    • (1998) Mol Ecol , vol.l7 , pp. 639-655
    • Marshall, T.C.1    Slate, J.2    Kruuk, L.E.B.3    Pemberton, J.M.4
  • 14
    • 0032063424 scopus 로고    scopus 로고
    • A threshold size for microsatellite expansion
    • COI: 1:CAS:528:DyaK1cXislensLk%3D, PID: 9580993
    • Rose O, Falush D (1998) A threshold size for microsatellite expansion. Mol Biol Evol 15:613–615
    • (1998) Mol Biol Evol , vol.15 , pp. 613-615
    • Rose, O.1    Falush, D.2
  • 15
    • 34447125737 scopus 로고    scopus 로고
    • Development of 18 polymorphic microsatellite DNA markers of Laminaria japonica (Phaeophyceae)
    • COI: 1:CAS:528:DC%2BD2sXpslOhu7w%3D
    • Shi YY, Yang GP, Liu YJ, Liao MJ, Li XJ, Cong YZ (2007) Development of 18 polymorphic microsatellite DNA markers of Laminaria japonica (Phaeophyceae). Mol Ecol Notes 7:620–622
    • (2007) Mol Ecol Notes , vol.7 , pp. 620-622
    • Shi, Y.Y.1    Yang, G.P.2    Liu, Y.J.3    Liao, M.J.4    Li, X.J.5    Cong, Y.Z.6
  • 16
  • 17
    • 0034826014 scopus 로고    scopus 로고
    • Algal biotechnology industries and research activities in China
    • Tseng CK (2001) Algal biotechnology industries and research activities in China. J Appl Phycol 13:375–380
    • (2001) J Appl Phycol , vol.13 , pp. 375-380
    • Tseng, C.K.1
  • 18
    • 4344648324 scopus 로고    scopus 로고
    • DNA fingerprinting of selected Laminaria (Phaeophyta) gametophytes by RAPD markers
    • COI: 1:CAS:528:DC%2BD2cXntVartr0%3D
    • Wang XL, Yang YX, Cong YZ, Duan DL (2004) DNA fingerprinting of selected Laminaria (Phaeophyta) gametophytes by RAPD markers. Aquaculture 238:143–153
    • (2004) Aquaculture , vol.238 , pp. 143-153
    • Wang, X.L.1    Yang, Y.X.2    Cong, Y.Z.3    Duan, D.L.4
  • 19
    • 84897923456 scopus 로고    scopus 로고
    • Plastid genome sequence of a wild woody oil species, Prinsepia utilis, provides insights into evolutionary and mutational patterns of Rosaceae chloroplast genomes
    • COI: 1:CAS:528:DC%2BC3sXhsVChsbnI, PID: 24023915
    • Wang S, Shi C, Gao LZ (2013) Plastid genome sequence of a wild woody oil species, Prinsepia utilis, provides insights into evolutionary and mutational patterns of Rosaceae chloroplast genomes. PLoS ONE 8, e73946
    • (2013) PLoS ONE , vol.8
    • Wang, S.1    Shi, C.2    Gao, L.Z.3
  • 20
    • 84863393816 scopus 로고    scopus 로고
    • Using next-generation sequencing approaches to isolate simple sequence repeat (SSR) loci in the plant sciences
    • COI: 1:CAS:528:DC%2BC38XksValt74%3D, PID: 22186186
    • Zalapa JE, Cuevas H, Zhu HY, Steffan S, Senalik D, Zeldin E, McCown B, Harbut R, Simon P (2012) Using next-generation sequencing approaches to isolate simple sequence repeat (SSR) loci in the plant sciences. Am J Bot 99:193–208
    • (2012) Am J Bot , vol.99 , pp. 193-208
    • Zalapa, J.E.1    Cuevas, H.2    Zhu, H.Y.3    Steffan, S.4    Senalik, D.5    Zeldin, E.6    McCown, B.7    Harbut, R.8    Simon, P.9
  • 21
    • 84900834183 scopus 로고    scopus 로고
    • Development of 27 trinucleotide microsatellite markers for Saccharina japonica using next generation sequencing technology
    • COI: 1:CAS:528:DC%2BC2cXks1yh
    • Zhang LN, Peng J, Li XJ, Liu YL, Cui CJ, Wu H, Wu RN, Tian PP, Li Y (2014a) Development of 27 trinucleotide microsatellite markers for Saccharina japonica using next generation sequencing technology. Conserv Genet Resour 6:341–344
    • (2014) Conserv Genet Resour , vol.6 , pp. 341-344
    • Zhang, L.N.1    Peng, J.2    Li, X.J.3    Liu, Y.L.4    Cui, C.J.5    Wu, H.6    Wu, R.N.7    Tian, P.P.8    Li, Y.9
  • 23
    • 84897354570 scopus 로고    scopus 로고
    • Development and characterization of microsatellite markers from an enriched genomic library of Saccharina japonica
    • COI: 1:CAS:528:DC%2BC2MXhsFWku70%3D
    • Zhang J, Li W, Qu J, Wang X, Liu C, Liu T (2015) Development and characterization of microsatellite markers from an enriched genomic library of Saccharina japonica. J Appl Phycol 27:479–487
    • (2015) J Appl Phycol , vol.27 , pp. 479-487
    • Zhang, J.1    Li, W.2    Qu, J.3    Wang, X.4    Liu, C.5    Liu, T.6


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.