-
1
-
-
79960919886
-
Source verification of mis-identified Arabidopsis thaliana accessions
-
Anastasio AE, Platt A, Horton M, et al,. (2011) Source verification of mis-identified Arabidopsis thaliana accessions. Plant Journal, 67, 554-566.
-
(2011)
Plant Journal
, vol.67
, pp. 554-566
-
-
Anastasio, A.E.1
Platt, A.2
Horton, M.3
-
2
-
-
80054718602
-
Spontaneous epigenetic variation in the Arabidopsis thaliana methylome
-
Becker C, Hagmann J, Muller J, et al,. (2011) Spontaneous epigenetic variation in the Arabidopsis thaliana methylome. Nature, 480, 245-249.
-
(2011)
Nature
, vol.480
, pp. 245-249
-
-
Becker, C.1
Hagmann, J.2
Muller, J.3
-
4
-
-
0035733108
-
The control of the false discovery rate in multiple testing under dependency
-
Benjamini Y, Yekutieli D, (2001) The control of the false discovery rate in multiple testing under dependency. Annals of Statistics, 29, 1165-1188.
-
(2001)
Annals of Statistics
, vol.29
, pp. 1165-1188
-
-
Benjamini, Y.1
Yekutieli, D.2
-
5
-
-
0037099954
-
All-scale spatial analysis of ecological data by means of principal coordinates of neighbour matrices
-
Borcard D, Legendre P, (2002) All-scale spatial analysis of ecological data by means of principal coordinates of neighbour matrices. Ecological Modelling, 153, 51-68.
-
(2002)
Ecological Modelling
, vol.153
, pp. 51-68
-
-
Borcard, D.1
Legendre, P.2
-
6
-
-
84867053720
-
Reprogramming of DNA methylation in pollen guides epigenetic inheritance via small RNA
-
Calarco JP, Borges F, Donoghue MT, et al,. (2012) Reprogramming of DNA methylation in pollen guides epigenetic inheritance via small RNA. Cell, 151, 194-205.
-
(2012)
Cell
, vol.151
, pp. 194-205
-
-
Calarco, J.P.1
Borges, F.2
Donoghue, M.T.3
-
7
-
-
84896689071
-
Mapping the epigenetic basis of complex traits
-
Cortijo S, Wardenaar R, Colomé-Tatché M, et al,. (2014) Mapping the epigenetic basis of complex traits. Science, 343, 1145-1148.
-
(2014)
Science
, vol.343
, pp. 1145-1148
-
-
Cortijo, S.1
Wardenaar, R.2
Colomé-Tatché, M.3
-
8
-
-
84860212089
-
Physiological Genomics of Response to Soil Drying in Diverse Arabidopsis Accessions
-
Des Marais DL, McKay JK, Richards JH, Richards JH, Sen S, Wayne T, Juenger TE, (2012) Physiological Genomics of Response to Soil Drying in Diverse Arabidopsis Accessions. The Plant Cell, 24, 893-914.
-
(2012)
The Plant Cell
, vol.24
, pp. 893-914
-
-
Des Marais, D.L.1
McKay, J.K.2
Richards, J.H.3
Richards, J.H.4
Sen, S.5
Wayne, T.6
Juenger, T.E.7
-
9
-
-
77954299992
-
AgriGO: A GO analysis toolkit for the agricultural community
-
Du Z, Zhou X, Ling Y, Zhang Z, Su Z, (2010) agriGO: a GO analysis toolkit for the agricultural community. Nucleic Acids Research, 38, W64-W70.
-
(2010)
Nucleic Acids Research
, vol.38
, pp. W64-W70
-
-
Du, Z.1
Zhou, X.2
Ling, Y.3
Zhang, Z.4
Su, Z.5
-
10
-
-
84930663528
-
DNA methylation in Arabidopsis has a genetic basis and shows evidence of local adaptation
-
Dubin MJ, Zhang P, Meng D, et al,. (2015) DNA methylation in Arabidopsis has a genetic basis and shows evidence of local adaptation. ELife, 4, e5025.
-
(2015)
ELife
, vol.4
, pp. e5025
-
-
Dubin, M.J.1
Zhang, P.2
Meng, D.3
-
11
-
-
84923345958
-
Intermediate DNA methylation is a conserved signature of genome regulation
-
Elliott G, Hong C, Xing X, et al,. (2015) Intermediate DNA methylation is a conserved signature of genome regulation. Nature Communications, 6, 6363.
-
(2015)
Nature Communications
, vol.6
, pp. 6363
-
-
Elliott, G.1
Hong, C.2
Xing, X.3
-
12
-
-
80053612343
-
A map of local adaptation in Arabidopsis thaliana
-
Fournier-Level A, Korte A, Cooper MD, Nordborg M, Schmitt J, Wilczek AM, (2011) A map of local adaptation in Arabidopsis thaliana. Science, 334, 86-89.
-
(2011)
Science
, vol.334
, pp. 86-89
-
-
Fournier-Level, A.1
Korte, A.2
Cooper, M.D.3
Nordborg, M.4
Schmitt, J.5
Wilczek, A.M.6
-
13
-
-
84880076219
-
Gene expression drives local adaptation in humans
-
Fraser HB, (2013) Gene expression drives local adaptation in humans. Genome Research, 23, 1089-1096.
-
(2013)
Genome Research
, vol.23
, pp. 1089-1096
-
-
Fraser, H.B.1
-
14
-
-
84922377811
-
Century-scale methylome stability in a recently diverged Arabidopsis thaliana lineage
-
Hagmann J, Becker C, Müller J, et al,. (2015) Century-scale methylome stability in a recently diverged Arabidopsis thaliana lineage. PLoS Genetics, 11, e1004920.
-
(2015)
PLoS Genetics
, vol.11
, pp. e1004920
-
-
Hagmann, J.1
Becker, C.2
Müller, J.3
-
15
-
-
33748778753
-
Natural Genetic Variation of Freezing Tolerance in Arabidopsis
-
Hannah MA, Wiese D, Freund S, et al., (2006) Natural Genetic Variation of Freezing Tolerance in Arabidopsis. Plant Physiol, 142, 98-112.
-
(2006)
Plant Physiol
, vol.142
, pp. 98-112
-
-
Hannah, M.A.1
Wiese, D.2
Freund, S.3
-
16
-
-
80053587873
-
Adaptation to climate across the Arabidopsis thaliana genome
-
Hancock AM, Brachi B, Faure N, et al,. (2011) Adaptation to climate across the Arabidopsis thaliana genome. Science, 334, 83-86.
-
(2011)
Science
, vol.334
, pp. 83-86
-
-
Hancock, A.M.1
Brachi, B.2
Faure, N.3
-
17
-
-
84896736377
-
How stable 'should' epigenetic modifications be? Insights from adaptive plasticity and bet hedging
-
Herman JJ, Spencer HG, Donohue K, Sultan SE, (2014) How stable 'should' epigenetic modifications be? Insights from adaptive plasticity and bet hedging. Evolution, 68, 632-643.
-
(2014)
Evolution
, vol.68
, pp. 632-643
-
-
Herman, J.J.1
Spencer, H.G.2
Donohue, K.3
Sultan, S.E.4
-
18
-
-
84883703352
-
DNA methylation contributes to natural human variation
-
Heyn H, Moran S, Hernando-Herraez I, et al,. (2013) DNA methylation contributes to natural human variation. Genome Research, 23, 1363-1372.
-
(2013)
Genome Research
, vol.23
, pp. 1363-1372
-
-
Heyn, H.1
Moran, S.2
Hernando-Herraez, I.3
-
19
-
-
29544443445
-
Very high resolution interpolated climate surfaces for global land areas
-
Hijmans RJ, Cameron SE, Parra JL, Jones PG, Jarvis A, (2005) Very high resolution interpolated climate surfaces for global land areas. International Journal of Climatology, 25, 1965-1978.
-
(2005)
International Journal of Climatology
, vol.25
, pp. 1965-1978
-
-
Hijmans, R.J.1
Cameron, S.E.2
Parra, J.L.3
Jones, P.G.4
Jarvis, A.5
-
20
-
-
84856270364
-
Genome-wide patterns of genetic variation in worldwide Arabidopsis thaliana accessions from the RegMap panel
-
Horton MW, Hancock AM, Huang YS, et al,. (2012) Genome-wide patterns of genetic variation in worldwide Arabidopsis thaliana accessions from the RegMap panel. Nature Genetics, 44, 212-216.
-
(2012)
Nature Genetics
, vol.44
, pp. 212-216
-
-
Horton, M.W.1
Hancock, A.M.2
Huang, Y.S.3
-
21
-
-
84924405710
-
Environmentally responsive genome-wide accumulation of de novo Arabidopsis thaliana mutations and epimutations
-
Jiang C, Mithani A, Belfield EJ, Mott R, Hurst LD, Harberd NP, (2014) Environmentally responsive genome-wide accumulation of de novo Arabidopsis thaliana mutations and epimutations. Genome Research, 24, 1821-1829.
-
(2014)
Genome Research
, vol.24
, pp. 1821-1829
-
-
Jiang, C.1
Mithani, A.2
Belfield, E.J.3
Mott, R.4
Hurst, L.D.5
Harberd, N.P.6
-
22
-
-
67651227407
-
Assessing the impact of transgenerational epigenetic variation on complex traits
-
Johannes F, Porcher E, Teixeira FK, et al,. (2009) Assessing the impact of transgenerational epigenetic variation on complex traits. PLoS Genetics, 5, e1000530.
-
(2009)
PLoS Genetics
, vol.5
, pp. e1000530
-
-
Johannes, F.1
Porcher, E.2
Teixeira, F.K.3
-
23
-
-
2942598781
-
Epialleles via DNA methylation: Consequences for plant evolution
-
Kalisz S, Purugganan MD, (2004) Epialleles via DNA methylation: consequences for plant evolution. Trends in Ecology & Evolution, 19, 309-314.
-
(2004)
Trends in Ecology & Evolution
, vol.19
, pp. 309-314
-
-
Kalisz, S.1
Purugganan, M.D.2
-
25
-
-
84862234802
-
The Arabidopsis Information Resource (TAIR): Improved gene annotation and new tools
-
Lamesch P, Berardini TZ, Li D, et al,. (2011) The Arabidopsis Information Resource (TAIR): improved gene annotation and new tools. Nucleic Acids Research, 40, D1202-D1210.
-
(2011)
Nucleic Acids Research
, vol.40
, pp. D1202-D1210
-
-
Lamesch, P.1
Berardini, T.Z.2
Li, D.3
-
26
-
-
84868207604
-
Characterizing genomic variation of Arabidopsis thaliana: The roles of geography and climate
-
Lasky JR, Des Marais DL, McKay JK, Richards JH, Juenger TE, Keitt TH, (2012) Characterizing genomic variation of Arabidopsis thaliana: the roles of geography and climate. Molecular Ecology, 21, 5512-5529.
-
(2012)
Molecular Ecology
, vol.21
, pp. 5512-5529
-
-
Lasky, J.R.1
Des Marais, D.L.2
McKay, J.K.3
Richards, J.H.4
Juenger, T.E.5
Keitt, T.H.6
-
27
-
-
84906751680
-
Natural variation in abiotic stress responsive gene expression and local adaptation to climate in Arabidopsis thaliana
-
Lasky JR, Des Marais DL, Lowry DB, et al,. (2014) Natural variation in abiotic stress responsive gene expression and local adaptation to climate in Arabidopsis thaliana. Molecular Biology and Evolution, 31, 2283-2296.
-
(2014)
Molecular Biology and Evolution
, vol.31
, pp. 2283-2296
-
-
Lasky, J.R.1
Des Marais, D.L.2
Lowry, D.B.3
-
28
-
-
85026988855
-
-
Genome-environment associations in sorghum landraces predict adaptive traits
-
Lasky JR, Upadhyaya HD, Ramu P, et al,. (2015) Genome-environment associations in sorghum landraces predict adaptive traits. Science Advances, 6, e1400218.
-
(2015)
Science Advances
, vol.6
, pp. e1400218
-
-
Lasky, J.R.1
Upadhyaya, H.D.2
Ramu, P.3
-
29
-
-
42749087226
-
Highly integrated single-base resolution maps of the epigenome in Arabidopsis
-
Lister R, O'Malley RC, Tonti-Filippini J, et al,. (2008) Highly integrated single-base resolution maps of the epigenome in Arabidopsis. Cell, 133, 523-536.
-
(2008)
Cell
, vol.133
, pp. 523-536
-
-
Lister, R.1
O'Malley, R.C.2
Tonti-Filippini, J.3
-
30
-
-
84882629332
-
The impact of climate change on plant epigenomes
-
Liu QA, (2013) The impact of climate change on plant epigenomes. Trends in Genetics, 29, 503-505.
-
(2013)
Trends in Genetics
, vol.29
, pp. 503-505
-
-
Liu, Q.A.1
-
31
-
-
44449134663
-
Gene-environment interactions and epigenetic basis of human diseases
-
Liu L, Li Y, Tollefsbol TO, (2008) Gene-environment interactions and epigenetic basis of human diseases. Current Issues in Molecular Biology, 10, 25-36.
-
(2008)
Current Issues in Molecular Biology
, vol.10
, pp. 25-36
-
-
Liu, L.1
Li, Y.2
Tollefsbol, T.O.3
-
32
-
-
84881026985
-
Massive genomic variation and strong selection in Arabidopsis thaliana lines from Sweden
-
Long Q, Rabanal FA, Meng D, et al,. (2013) Massive genomic variation and strong selection in Arabidopsis thaliana lines from Sweden. Nature Genetics, 45, 884-890.
-
(2013)
Nature Genetics
, vol.45
, pp. 884-890
-
-
Long, Q.1
Rabanal, F.A.2
Meng, D.3
-
33
-
-
77956087880
-
Perspectives on the use of landscape genetics to detect genetic adaptive variation in the field
-
Manel S, Joost S, Epperson BK, et al,. (2010) Perspectives on the use of landscape genetics to detect genetic adaptive variation in the field. Molecular Ecology, 19, 3760-3772.
-
(2010)
Molecular Ecology
, vol.19
, pp. 3760-3772
-
-
Manel, S.1
Joost, S.2
Epperson, B.K.3
-
34
-
-
50649089207
-
RNA-seq: An assessment of technical reproducibility and comparison with gene expression arrays
-
Marioni JC, Mason CE, Mane SM, Stephens M, Gilad Y, (2008) RNA-seq: An assessment of technical reproducibility and comparison with gene expression arrays. Genome Research, 18, 1509-1517.
-
(2008)
Genome Research
, vol.18
, pp. 1509-1517
-
-
Marioni, J.C.1
Mason, C.E.2
Mane, S.M.3
Stephens, M.4
Gilad, Y.5
-
35
-
-
84881083007
-
Genome-wide variation of cytosine modifications between European and African populations and the implications for complex traits
-
Moen EL, Zhang X, Mu W, et al,. (2013) Genome-wide variation of cytosine modifications between European and African populations and the implications for complex traits. Genetics, 194, 987-996.
-
(2013)
Genetics
, vol.194
, pp. 987-996
-
-
Moen, E.L.1
Zhang, X.2
Mu, W.3
-
36
-
-
22744434580
-
The pattern of polymorphism in Arabidopsis thaliana
-
Nordborg M, Hu TT, Ishino Y, et al,. (2005) The pattern of polymorphism in Arabidopsis thaliana. PLoS Biology, 3, e196.
-
(2005)
PLoS Biology
, vol.3
, pp. e196
-
-
Nordborg, M.1
Hu, T.T.2
Ishino, Y.3
-
37
-
-
84982128306
-
Rare variation facilitates inferences of fine-scale population structure in humans
-
Project NGES et al
-
O'Connor TD, Fu W, Project NGES et al. (2015) Rare variation facilitates inferences of fine-scale population structure in humans. Molecular Biology and Evolution 32, 653-660.
-
(2015)
Molecular Biology and Evolution
, vol.32
, pp. 653-660
-
-
O'Connor, T.D.1
Fu, W.2
-
39
-
-
84866933213
-
A critical assessment of storytelling: Gene ontology categories and the importance of validating genomic scans
-
Pavlidis P, Jensen JD, Stephan W, Stamatakis A, (2012) A critical assessment of storytelling: gene ontology categories and the importance of validating genomic scans. Molecular Biology and Evolution, 29, 3237-3248.
-
(2012)
Molecular Biology and Evolution
, vol.29
, pp. 3237-3248
-
-
Pavlidis, P.1
Jensen, J.D.2
Stephan, W.3
Stamatakis, A.4
-
40
-
-
78049460068
-
Epigenetic regulation of repetitive elements is attenuated by prolonged heat stress in Arabidopsis
-
Pecinka A, Dinh HQ, Baubec T, Rosa M, Lettner N, Scheid OM, (2010) Epigenetic regulation of repetitive elements is attenuated by prolonged heat stress in Arabidopsis. The Plant Cell, 22, 3118-3129.
-
(2010)
The Plant Cell
, vol.22
, pp. 3118-3129
-
-
Pecinka, A.1
Dinh, H.Q.2
Baubec, T.3
Rosa, M.4
Lettner, N.5
Scheid, O.M.6
-
41
-
-
33845367389
-
Variation partitioning of species data matrices: Estimation and comparison of fractions
-
Peres-Neto PR, Legendre P, Dray S, Borcard D, (2006) Variation partitioning of species data matrices: estimation and comparison of fractions. Ecology, 87, 2614-2625.
-
(2006)
Ecology
, vol.87
, pp. 2614-2625
-
-
Peres-Neto, P.R.1
Legendre, P.2
Dray, S.3
Borcard, D.4
-
42
-
-
77649215261
-
The scale of population structure in Arabidopsis thaliana
-
Platt A, Horton M, Huang YS, et al,. (2010) The scale of population structure in Arabidopsis thaliana. PLoS Genetics, 6, e1000843.
-
(2010)
PLoS Genetics
, vol.6
, pp. e1000843
-
-
Platt, A.1
Horton, M.2
Huang, Y.S.3
-
43
-
-
84937731757
-
Genome-wide signature of local adaptation linked to variable CpG methylation in oak populations
-
Platt A, Gugger PF, Pellegrini M, Sork VL, (2015) Genome-wide signature of local adaptation linked to variable CpG methylation in oak populations. Molecular Ecology, 24, 3823-3830.
-
(2015)
Molecular Ecology
, vol.24
, pp. 3823-3830
-
-
Platt, A.1
Gugger, P.F.2
Pellegrini, M.3
Sork, V.L.4
-
44
-
-
34548292504
-
PLINK: A tool set for whole-genome association and population-based linkage analyses
-
Purcell S, Neale B, Todd-Brown K, et al,. (2007) PLINK: a tool set for whole-genome association and population-based linkage analyses. American Journal of Human Genetics, 81, 559-575.
-
(2007)
American Journal of Human Genetics
, vol.81
, pp. 559-575
-
-
Purcell, S.1
Neale, B.2
Todd-Brown, K.3
-
45
-
-
80054837794
-
Transgenerational epigenetic instability is a source of novel methylation variants
-
Schmitz RJ, Schultz MD, Lewsey MG, et al,. (2011) Transgenerational epigenetic instability is a source of novel methylation variants. Science, 334, 369-373.
-
(2011)
Science
, vol.334
, pp. 369-373
-
-
Schmitz, R.J.1
Schultz, M.D.2
Lewsey, M.G.3
-
46
-
-
84874991260
-
Patterns of population epigenomic diversity
-
Schmitz RJ, Schultz MD, Urich MA, et al,. (2013) Patterns of population epigenomic diversity. Nature, 495, 193-198.
-
(2013)
Nature
, vol.495
, pp. 193-198
-
-
Schmitz, R.J.1
Schultz, M.D.2
Urich, M.A.3
-
47
-
-
84922621952
-
Function and information content of DNA methylation
-
Schubeler D, (2015) Function and information content of DNA methylation. Nature, 517, 321-326.
-
(2015)
Nature
, vol.517
, pp. 321-326
-
-
Schubeler, D.1
-
48
-
-
84862991434
-
An efficient multi-locus mixed-model approach for genome-wide association studies in structured populations
-
Segura V, Vilhjalmsson BJ, Platt A, et al,. (2012) An efficient multi-locus mixed-model approach for genome-wide association studies in structured populations. Nature Genetics, 44, 825-830.
-
(2012)
Nature Genetics
, vol.44
, pp. 825-830
-
-
Segura, V.1
Vilhjalmsson, B.J.2
Platt, A.3
-
49
-
-
0034522525
-
Genetic isolation by distance in Arabidopsis thaliana: Biogeography and postglacial colonization of Europe
-
Sharbel TF, Haubold B, Mitchell-Olds T, (2000) Genetic isolation by distance in Arabidopsis thaliana: biogeography and postglacial colonization of Europe. Molecular Ecology, 9, 2109-2118.
-
(2000)
Molecular Ecology
, vol.9
, pp. 2109-2118
-
-
Sharbel, T.F.1
Haubold, B.2
Mitchell-Olds, T.3
-
50
-
-
84919682702
-
Natural CMT2 variation is associated with genome-wide methylation changes and temperature seasonality
-
Shen X, De Jonge J, Forsberg SKG, et al,. (2014) Natural CMT2 variation is associated with genome-wide methylation changes and temperature seasonality. PLoS Genetics, 10, e1004842.
-
(2014)
PLoS Genetics
, vol.10
, pp. e1004842
-
-
Shen, X.1
De Jonge, J.2
Forsberg, S.K.G.3
-
51
-
-
84893716683
-
Non-CG methylation patterns shape the epigenetic landscape in Arabidopsis
-
Stroud H, Do T, Du J, et al,. (2014) Non-CG methylation patterns shape the epigenetic landscape in Arabidopsis. Nature Structural & Molecular Biology, 21, 64-72.
-
(2014)
Nature Structural & Molecular Biology
, vol.21
, pp. 64-72
-
-
Stroud, H.1
Do, T.2
Du, J.3
-
52
-
-
34250300622
-
Redundancy analysis an alternative for canonical correlation analysis
-
Van Den Wollenberg AL, (1977) Redundancy analysis an alternative for canonical correlation analysis. Psychometrika, 42, 207-219.
-
(1977)
Psychometrika
, vol.42
, pp. 207-219
-
-
Van Den Wollenberg, A.L.1
-
54
-
-
84875741680
-
The Arabidopsis nucleosome remodeler DDM1 allows DNA methyltransferases to access H1-containing heterochromatin
-
Zemach A, Kim MY, Hsieh PH, et al,. (2013) The Arabidopsis nucleosome remodeler DDM1 allows DNA methyltransferases to access H1-containing heterochromatin. Cell, 153, 193-205.
-
(2013)
Cell
, vol.153
, pp. 193-205
-
-
Zemach, A.1
Kim, M.Y.2
Hsieh, P.H.3
-
55
-
-
84866081028
-
Divergent whole-genome methylation maps of human and chimpanzee brains reveal epigenetic basis of human regulatory evolution
-
Zeng J, Konopka G, Hunt BG, et al,. (2012) Divergent whole-genome methylation maps of human and chimpanzee brains reveal epigenetic basis of human regulatory evolution. American Journal of Human Genetics, 91, 455-465.
-
(2012)
American Journal of Human Genetics
, vol.91
, pp. 455-465
-
-
Zeng, J.1
Konopka, G.2
Hunt, B.G.3
-
56
-
-
33845880624
-
Genome-wide analysis of Arabidopsis thaliana DNA methylation uncovers an interdependence between methylation and transcription
-
Zilberman D, Gehring M, Tran RK, Ballinger T, Henikoff S, (2006) Genome-wide analysis of Arabidopsis thaliana DNA methylation uncovers an interdependence between methylation and transcription. Nature Genetics, 39, 61-69.
-
(2006)
Nature Genetics
, vol.39
, pp. 61-69
-
-
Zilberman, D.1
Gehring, M.2
Tran, R.K.3
Ballinger, T.4
Henikoff, S.5
-
57
-
-
41349109725
-
Climate change mitigation: A spatial analysis of global land suitability for clean development mechanism afforestation and reforestation
-
Zomer RJ, Trabucco A, Bossio DA, Verchot LV, (2008) Climate change mitigation: a spatial analysis of global land suitability for clean development mechanism afforestation and reforestation. Agriculture, Ecosystems & Environment, 126, 67-80.
-
(2008)
Agriculture, Ecosystems & Environment
, vol.126
, pp. 67-80
-
-
Zomer, R.J.1
Trabucco, A.2
Bossio, D.A.3
Verchot, L.V.4
|