An Efficient Independence Sampler for Updating Branches in Bayesian Markov chain Monte Carlo Sampling of Phylogenetic Trees

Systematic Biology

Volumn 65, Issue 1, 2016, Pages 161-176

  Aberer, Andre J ^a   Stamatakis, Alexandros ^a,b   Ronquist, Fredrik ^c  

^a HEIDELBERG INSTITUTE FOR THEORETICAL STUDIES   (Germany)

^b KARLSRUHE INSTITUTE OF TECHNOLOGY   (Germany)

^c SWEDISH MUSEUM OF NATURAL HISTORY   (Sweden)

Author keywords

Bayesian inference; independence sampling; Markov chain Monte Carlo; Newton Raphson optimization; phylogenetics; proposal efficiency; tree topology proposals

Indexed keywords

ALGORITHM; BAYES THEOREM; CLASSIFICATION; COMPUTER SIMULATION; MARKOV CHAIN; MONTE CARLO METHOD; PHYLOGENY; PROCEDURES; THEORETICAL MODEL;

ALGORITHMS; BAYES THEOREM; CLASSIFICATION; COMPUTER SIMULATION; MARKOV CHAINS; MODELS, THEORETICAL; MONTE CARLO METHOD; PHYLOGENY;

EID: 84960440029     PISSN: 10635157     EISSN: 1076836X     Source Type: Journal    
DOI: 10.1093/sysbio/syv051     Document Type: Article

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