Description of Luteimonas pelagia sp. Nov., isolated from marine sediment, and emended descriptions of luteimonas aquatica, Luteimonas composti, Luteimonas mephitis, Lysobacter enzymogenes and Lysobacter panaciterrae

International Journal of Systematic and Evolutionary Microbiology

Volumn 66, Issue 2, 2016, Pages 645-651

  Lin, Shih Yao ^a   Hameed, Asif ^a   Shahina, Mariyam ^a   Liu, You Cheng ^a   Hsu, Yi Han ^a   Wen, Cheng Zhe ^a   Young, Chiu Chung ^a  

^a NATIONAL CHUNG HSING UNIVERSITY   (Taiwan)

Author keywords

[No Author keywords available]

Indexed keywords

ARTICLE; BACTERIUM ISOLATION; CARBON SOURCE; GENE SEQUENCE; GRAM NEGATIVE BACTERIUM; LUTEIMONAS AQUATICA; LUTEIMONAS COMPOSTI; LUTEIMONAS MEPHITIS; LUTEIMONAS PELAGIA; LYSOBACTER; LYSOBACTER ENZYMOGENES; LYSOBACTER PANACITERRAE; MAXIMUM LIKELIHOOD METHOD; NONHUMAN; NUCLEOTIDE SEQUENCE; PHYLOGENETIC TREE; PRIORITY JOURNAL; TYPE STRAIN; XANTHOMONADACEAE;

EID: 84960415761     PISSN: 14665026     EISSN: None     Source Type: Journal    
DOI: 10.1099/ijsem.0.000769     Document Type: Article

References (25)

1. Chou, J.-H., Cho, N.-T., Arun, A. B., Young, C.-C. & Chen, W.-M. (2008). Luteimonas aquatica sp. nov., isolated from fresh water from southern Taiwan. Int J Syst Evol Microbiol 58, 2051–2055.
2. Christensen, P. & Cook, F. D. (1978). Lysobacter, a new genus of nonfruiting, gliding bacteria with a high base ratio. Int J Syst Bacteriol 28, 367–393.
3. Collins, M. D. (1985). Isoprenoid quinone analysis in classification and identification. In Chemical Methods in Bacterial Systematics, pp. 267–287. Edited by M. Goodfellow & D. E. Minnikin. London: Academic Press.
4. Edwards, U., Rogall, T., Blöcker, H., Emde, M. & Böttger, E. C. (1989). Isolation and direct complete nucleotide determination of entire genes. Characterization of a gene coding for 16S ribosomal RNA. Nucleic Acids Res 17, 7843–7853.
5. Fan, X., Yu, T., Li, Z. & Zhang, X.-H. (2014). Luteimonas abyssi sp. nov., isolated from deep-sea sediment. Int J Syst Evol Microbiol 64, 668–674.
6. Felsenstein, J. (1981). Evolutionary trees from DNA sequences: a maximum likelihood approach. J Mol Evol 17, 368–376.
7. Felsenstein, J. (1985). Confidence limits on phylogenies: an approach using the bootstrap. Evolution 39, 783–791.
8. Finkmann, W., Altendorf, K., Stackebrandt, E. & Lipski, A. (2000). Characterization of N2O-producing Xanthomonas-like isolates from biofilters as Stenotrophomonas nitritireducens sp. nov., Luteimonas mephitis gen. nov., sp. nov. and Pseudoxanthomonas broegbernensis gen. nov., sp. nov. Int J Syst Evol Microbiol 50, 273–282.
9. Fitch, W. M. (1971). Toward defining the course of evolution: minimum change for a specific tree topology. Syst Zool 20, 406–416.
10. Kim, O. S., Cho, Y. J., Lee, K., Yoon, S. H., Kim, M., Na, H., Park, S. C., Jeon, Y. S., Lee, J. H. & other authors (2012). Introducing EzTaxone: a prokaryotic 16S rRNA gene sequence database with phylotypes that represent uncultured species. Int J Syst Evol Microbiol 62, 716–721.
11. Mesbah, M., Premachandran, U. & Whitman, W. B. (1989). Precise measurement of the G+C content of deoxyribonucleic acid by highperformance liquid chromatography. Int J Syst Bacteriol 39, 159–167.
12. Miller, L. T. (1982). Single derivatization method for routine analysis of bacterial whole-cell fatty acid methyl esters, including hydroxyl acids. J Clin Microbiol 16, 584–586.
13. Minnikin, D. E., O’Donnell, A. G., Goodfellow, M., Alderson, G., Athalye, M., Schaal, K. & Parlett, J. H. (1984). An integrated procedure for the extraction of bacterial isoprenoid quinones and polar lipids. J Microbiol Methods 2, 233–241.
14. Murray, R. G. E., Doetsch, R. N. & Robinow, C. F. (1994). Determination and cytological light microscopy. In Methods for General and Molecular Bacteriology, pp. 32–34. Edited by P. Gerhardt, R. G. E. Murray, W. A. Wood & N. R. Krieg. Washington, DC: American Society for Microbiology.
15. Paisley, R. (1996). MIS Whole Cell Fatty Acid Analysis by Gas Chromatography Training Manual., Newark, DE: MIDI Inc.
16. Saitou, N. & Nei, M. (1987). The neighbor-joining method: a new method for reconstructing phylogenetic trees. Mol Biol Evol 4, 406–425.
17. Sasser, M. (1990). Identification of bacteria by gas chromatography of cellular fatty acids, MIDI Technical Note 101. Newark, DE: MIDI Inc.
18. Tamura, K., Stecher, G., Peterson, D., Filipski, A. & Kumar, S. (2013). MEGA6: molecular evolutionary genetics analysis version 6.0. Mol Biol Evol 30, 2725–2729.
19. Ten, L. N., Jung, H.-M., Im, W.-T., Yoo, S.-A., Oh, H. M. & Lee, S.-T. (2009). Lysobacter panaciterrae sp. nov., isolated from soil of a ginseng field. Int J Syst Evol Microbiol 59, 958–963.
20. Thompson, J. D., Gibson, T. J., Plewniak, F., Jeanmougin, F. & Higgins, D. G. (1997). The CLUSTAL_X windows interface: flexible strategies for multiple sequence alignment aided by quality analysis tools. Nucleic Acids Res 25, 4876–4882.
21. Tindall, B. J. (2014). The family name Solimonadaceae Losey et al. 2013 is illegitimate, proposals to create the names ‘Sinobacter soli’ comb. nov. and ‘Sinobacter variicoloris’ contravene the Code, the family name Xanthomonadaceae Saddler and Bradbury 2005 and the order name Xanthomonadales Saddler and Bradbury 2005 are illegitimate and notes on the application of the family names
22. Solibacteraceae Zhou et al. 2008, Nevskiaceae Henrici and Johnson 1935 (Approved Lists 1980) and Lysobacteraceae Christensen and Cook 1978 (Approved Lists 1980) and order name Lysobacteriales Christensen and Cook 1978 (Approved Lists 1980) with respect to the classification of the corresponding type genera Solibacter Zhou et al. 2008, Nevskia Famintzin 1892 (Approved Lists 1980) and Lysobacter Christensen and Cook 1978 (Approved Lists 1980) and importance of accurately expressing the link between a taxonomic name, its authors and the corresponding description/circumscription/emendation. Int J Syst Evol Microbiol 64, 293–297.
23. Wu, G., Liu, Y., Li, Q., Du, H., You, J., Li, H., Ke, C., Zhang, X., Yu, J. & Zhao, T. (2013). Luteimonas huabeiensis sp. nov., isolated from stratum water. Int J Syst Evol Microbiol 63, 3352–3357.
24. Yassin, A. F., Chen, W.-M., Hupfer, H., Siering, C., Kroppenstedt, R. M., Arun, A. B., Lai, W.-A., Shen, F.-T., Rekha, P. D. & Young, C. -C. (2007). Lysobacter defluvii sp. nov., isolated from municipal solid waste. Int J Syst Evol Microbiol 57, 1131–1136.
25. Young, C.-C., Kämpfer, P., Chen, W.-M., Yen, W.-S., Arun, A. B., Lai, W.-A., Shen, F.-T., Rekha, P. D., Lin, K.-Y. & Chou, J.-H. (2007). Luteimonas composti sp. nov., a moderately thermophilic bacterium isolated from food waste. Int J Syst Evol Microbiol 57, 741–744.