Exploring plant growth-promotion actinomycetes from vermicompost and rhizosphere soil for yield enhancement in chickpea

Brazilian Journal of Microbiology

Volumn 47, Issue 1, 2016, Pages 85-95

  Sreevidya, M ^a,b   Gopalakrishnan, S ^b   Kudapa, H ^b   Varshney, R K ^b  

^a JAWAHARLAL NEHRU TECHNOLOGICAL UNIVERSITY   (India)

^b INTERNATIONAL CROPS RESEARCH INSTITUTE FOR THE SEMI ARID TROPICS ICRISAT   (India)

Author keywords

Actinomycetes; Biocontrol; Chickpea; Gene expression; PGP; Streptomyces

Indexed keywords

BACTERIAL DNA; PHYTOHORMONE; RIBOSOME DNA; RNA 16S; SODIUM CHLORIDE; SOIL;

ACTINOBACTERIA; CHEMISTRY; CICER; CLUSTER ANALYSIS; DNA SEQUENCE; GENETICS; GROWTH, DEVELOPMENT AND AGING; METABOLISM; MICROBIOLOGY; MOLECULAR GENETICS; PH; PHYLOGENY; RHIZOSPHERE; SOIL; TEMPERATURE;

ACTINOBACTERIA; CICER; CLUSTER ANALYSIS; DNA, BACTERIAL; DNA, RIBOSOMAL; HYDROGEN-ION CONCENTRATION; MOLECULAR SEQUENCE DATA; PHYLOGENY; PLANT GROWTH REGULATORS; RHIZOSPHERE; RNA, RIBOSOMAL, 16S; SEQUENCE ANALYSIS, DNA; SODIUM CHLORIDE; SOIL; SOIL MICROBIOLOGY; TEMPERATURE;

EID: 84960089578     PISSN: 15178382     EISSN: 16784405     Source Type: Journal    
DOI: 10.1016/j.bjm.2015.11.030     Document Type: Article

References (56)

1. FAOSTAT. Food and Agriculture Organization Statistical Databases. Rome: Food and Agriculture Organization; 2014.
2. Rao PP, Birthal PS, Bhagavatula S, Bantilan MCS. Chickpea and Pigeonpea Economies in Asia: Facts, Trends and Outlook. Patancheru, Andhra Pradesh, India: International CropsResearch Institute for the Semi-Arid Tropics; 2010:76.
3. Akhtar MS, Siddiqui ZA. Effect of AM fungi on plant growthand root-rot diseases of chickpea. Am Eurasian J Agric Environ Sci. 2010;8:544–549.
4. Sharma M, Mangla UN, Krishnamurthy M, Vedez V, Pande S. Drought and Dry Root Rot of Chickpea. Paper presented in 5thInternational Food Legumes Research Conference (IFLRCV)and European conference on Grain Legumes; 2010:26–30.
5. Halder AK, Mishra AK, Chakarbarty PK. Solubilization of inorganic phosphates by Bradyrhizobium. Indian J Exp Biol.1991;29:28–31.
6. Elliot LF, Lynch JM. The international workshop onestablishment of microbial inocula in soils: cooperativeresearch project on biological resource management of theorganization for economic cooperation and development(OECD). Am J Altern Agric. 1995;10:50–73.
7. Merzaeva OV, Shirokikh IG. Colonization of plant rhizosphereby actinomycetes of different genera. Mikrobiologiia.2006;75:271–276.
8. Cattelan AJ, Hartel PG. Traits associated with plant growth-promoting rhizobacteria (PGPR). In: Socieda deBrasileira de Ciência do Solo. Tópicos em ciência do solo. Viçosa:Socieda de Brasileira de Ciência do Solo; 2000:213–234.
9. Petrosyan P, García-Varela M, Luz-Madrigal A, Huitrón C, Flores ME. Streptomyces mexicanus sp. nov., a xylanolyticmicro-organism isolated from soil. Int J Syst Evol Microbiol.2003;53(Pt 1):269–273.
10. Ding CH, Jiang ZQ, Li XT, Li LT, Kusakabe I. High activityxilanase production by Streptomyces olivaceoviridis E-86. World J Microbiol Biotechnol. 2004;20:7–10.
11. Nassar AH, El-Tarabily KA, Sivasithamparam K. Growth promotion of bean (Phaseolus vulgaris L.) by apolyamine-producing isolate of Streptomyces griseoluteus. Plant Growth Regul. 2003;40:97–106.
12. Gopalakrishnan S, Suresh P, Mamta S, et al. Evaluation ofactinomycete isolates obtained from herbal vermicompostfor the biological control of Fusarium wilt of chickpea. CropProt. 2011;30:1070–1078.
13. Aneja KR. Staining methods: Gram staining of bacteria. In: New Age. Experiments in Microbiology Plant Pathology and Biotechnology. New Age International Limited Publishers;2003:102–106.
14. Altschul SF, Gish W, Miller W, Myers EW, Lipman DJ. Basiclocal alignment search tool. J Mol Biol. 1990;215:403–410.
15. Thompson JD, Gibson TJ, Plewniak F, Jeanmougin F, Higgins DG. The CLUSTAL X windows interface: flexible strategies formultiple sequence alignment aided by quality analysis tools. Nucleic Acids Res. 1997;25:4876–4882.
16. Saitou N, Nei M. The neighbor-joining method: a newmethod for reconstructing phylogenetic trees. Mol Biol Evol.1987;4:406–425.
17. Gopalakrishnan S, Upadhyaya H, Vadlamudi S, et al. Plant growth-promoting traits of biocontrol potential bacteriaisolated from rice rhizosphere. Springerplus. 2012;1(1):71.
18. Schwyn B, Neilands JB. Universal chemical assay for thedetection and determination of siderophores. Anal Biochem.1987;160:47–56.
19. Hsu SC, Lockwood JL. Powdered chitin agar as a selectivemedium for enumeration of actinomycetes in water and soil. Appl Microbiol. 1975;29:422–426.
20. Hendricks CW, Doyle JD, Hugley B. A new solid medium forenumerating cellulose-utilizing bacteria in soil. Appl Environ Microbiol. 1995;61:2016–2019.
21. Bhattacharya A, Chandra S, Barik S. Lipase and proteaseproducing microbes from the environment of sugar beetfield. Ind J Agric Biochem. 2009;22:26–30.
22. Lorck H. Production of hydrocyanic acid by bacteria. Plant Physiol. 1948;1:142–146.
23. Patten CL, Glick BR. Role of Pseudomonas putida indoleaceticacid in development of the host plant root system. Appl Environ Microbiol. 2002;68:3795–3801.
24. Chamblee DS, Green JT. Production and utilization ofpastures and forages in North Carolina. N C Agric Res ServTech Bull. 1995;305:153.
25. Novozamsky I, Houba VJG, van Eck R, van Vark W. A noveldigestion technique for multiple element analysis. CommunSoil Sci Plant Anal. 1983;14:239–248.
26. Olsen SR, Sommers LE. Phosphorus. In: Methods of Soil Analysis, Part 2, Chemical and Microbial Properties. Agronomy Monograph No. 9, 2nd ed. Madison, WI, USA: AL Page,American Society of Agronomy; 1982:403–430.
27. Nelson DW, Sommers LE. Total organic carbon and organicmatter. In: Page AL, Miller RH, Keeney DR, eds. Methods of SoilAnalysis. Part 3: Chemical and Microbiological Properties. Madison, WI: Soil Science of America, Inc.; 1982:539–579.
28. Anderson TH, Domsch KH. Ratios of microbial biomasscarbon to total organic carbon in arable soils. Soil Biol Biochem. 1989;21:471–479.
29. Brooks PC, Landman A, Pruden G, Jenkinson DS. Chloroformfumigation and the release of soil nitrogen; a rapid directextraction method to measure microbial biomass nitrogen insoil. Soil Biol Biochem. 1985;17:837–842.
30. Casida LE Jr. Microbial metabolic activity in soil as measuredby dehydrogenase determinations. Appl Environ Microbiol.1977;34:630–636.
31. Bozzola JJ, Russell LD. Electron Microscopy: Principals and Techniques for Biologists. 2nd ed. Sudbury, MA: Jones andBarlett Publishers; 1999:19–24, 54–55, 63–67.
32. Chomczynski P, Mackey K. Substitution of chloroform by bromo-chloropropane in the single-step method of RNA isolation. Anal Biochem. 1995;225:163–164.
33. Rosen S, Skaletsky HJ. Primer 3 on the WWW for generalusers and for biologist programmers. In: Krawetz S, MisenerS, eds. Bioinformatics Methods and Protocols: Methods inMolecular Biology. Totowa, NJ: Humana Press; 2000:365–386.
34. Gopalakrishnan S, Vadlamudi S, Bandikinda P, et al. Evaluation of Streptomyces strains isolated from herbalvermicompost for their plant growth-promotion traits inrice. Microbiol Res. 2014;169:40–48.
35. Phukan I, Madhab M, Bordoloi M, et al. Exploitation of PGPmicrobes of tea for improvement of plant growth and pestsuppression: a novel approach. Two Bud. 2012;59:69–74.
36. Hamdali H, Hafidi M, Virolle MJ, Ouhdouch Y. Rock phosphate-solubilizing Actinomycetes: screening for plant growth-promoting activities. World J Microbiol Biotechnol.2008;24:2565–2575.
37. El-Tarabily KA. Promotion of tomato (Lycopersi conesculentumMill.) plant growth by rhizosphere competent 1-aminocyclopropane-1-carboxylic acid deaminase-producing Streptomycete actinomycetes. Plant Soil. 2008;308:161–174.
38. Tokala RK, Strap JL, Jung CM, et al. Novel plant–microberhizosphere interaction involving Streptomyces lydicusWYEC108 and the pea plant (Pisum sativum). Appl Environ Microbiol. 2002;68:2161–2171.
39. Araújo JM. Strategies for selective isolation of actinomycetes. In: Melo IS, Azevedo JL, eds. Microbial Ecology. Jaguariuna:EMBRAPA – CNPMA; 1998:351–367.
40. Cross T. Growth and examination of actinomycetes: someguidelines. In: Williams ST, Sharpe ME, Holt JG, eds. Bergey’s Manual of Systematic Bacteriology. Baltimore: Williams andWilkins; 1989:2340–2343.
41. Habe MH, Uesughi CH. An in vitro method for evaluating theability of bacteria colonizing on tomato roots. Braz Phytopathol. 2000;25:657–660.
42. Drozdowicz AG. Microbiologia do solo. In: Roitman I,Travassos LR, Azevedo JL, eds. Tratado de microbiologia. SãoPaulo: Manole; 1987:17–28.
43. El-Tarabily KA, Nassar AH, Hardy GE, Sivasithamparam K. Plant growth promotion and biological control of Pythiumaphanidermatum, a pathogen of cucumber, by endophyticactinomycetes. J Appl Microbiol. 2009;106:13–26.
44. Wang Y, Brown HN, Crowley DE, Szaniszlo PJ. Evidence fordirect utilization of a siderophore, ferrioxamine B, inaxenically grown cucumber. Plant Cell Environ.1993;16:579–585.
45. Wei G, Kloepper JW, Sadik T. Induction of systemic resistanceof cucumber to Colletotrichum orbiculare by selected strains ofplant growth promoting rhizobacteria. Phytopathology.1991;81:1508–1512.
46. Bhosale HJ, Kadam TA. Generic diversity and a comparativeaccount on plant growth promoting characteristics ofactinomycetes in roots and rhizosphere of Saccharumofficinarum. Int J Curr Microbiol Appl Sci. 2015;4:230–244.
47. Joseph B, Patra RR, Lawrence R. Characterization of plantgrowth promoting rhizobacteria associated with chickpea(Cicer arietinum L). Int J Plant Prod. 2007;1:141–152.
48. Suwan N, Boonying W, Nalumpang S. Antifungal activity ofsoil actinomycetes to control chilli anthracnose caused by Colletotrichum gloeosporioides. J Agric Technol. 2012;8:725–737.
49. Rodríguez H, Fraga R. Phosphate solubilizing bacteria andtheir role in plant growth promotion. Biotechnol Adv.1999;17:319–339.
50. Kloepper J, Tuzun S, Kuc J. Proposed definitions related toinduced disease resistance. Biocontrol Sci Technol.1992;2:347–349.
51. van Overbeek LS, van Elsas JD. Root exudates-inducedpromoter activity in Pseudomonas fluorescens mutants in thewheat rhizosphere. Appl Environ Microbiol. 1995;61:890–898.
52. Weller DM. Biological control of soil-borne plant pathogensin the rhizosphere with bacteria. Annu Rev Phytopathol.1988;26:379–407.
53. Youssef YA, El-Tarabily KA, Hussein AM. Plectosporiumtabacinum root rot disease of white lupine (Lupinus termisForsk.) and its biological control by Streptomyces species. J Phytopathol. 2001;1490:29–33.
54. Franco-Correa M, Quintana A, Duque C, Suarez C, Rodriguez MX, Jose-Miguel B. Evaluation of actinomycete strains for keytraits related with plant growth promotion and my corrhizahelping activities. Appl Soil Ecol. 2010;45:209–217.
55. Bailey BA, Bae H, Strem MD, et al. Fungal and plant geneexpression during the colonization of cacao seedlings byendophytic isolates of four Trichoderma species. Planta.2006;224:1449–1464.
56. Muto H, Watahiki MK, Yamamoto KT. What makes eachaux/IAA gene unique in its gene family, expression patternor properties of the gene product? Plant Signal Behav.2007;2:390–392.