-
1
-
-
38449088143
-
Comparative metagenomics revealed commonly enriched gene sets in human gut microbiomes
-
doi:10.1093/dnares/dsm018
-
Kurokawa K, Itoh T, Kuwahara T, Oshima K, Toh H, et al. (2007) Comparative metagenomics revealed commonly enriched gene sets in human gut microbiomes. DNA Research : an international journal for rapid publication of reports on genes and genomes 14: 169-181. doi:10.1093/dnares/dsm018.
-
(2007)
DNA Research: An International Journal for Rapid Publication of Reports on Genes and Genomes
, vol.14
, pp. 169-181
-
-
Kurokawa, K.1
Itoh, T.2
Kuwahara, T.3
Oshima, K.4
Toh, H.5
-
2
-
-
33845874101
-
An obesity-associated gut microbiome with increased capacity for energy harvest
-
Available: Accessed 1 November 2012
-
Turnbaugh PJ, Ley RE, Mahowald M a, Magrini V, Mardis ER, et al. (2006) An obesity-associated gut microbiome with increased capacity for energy harvest. Nature 444: 1027-1031. Available: http://www.ncbi.nlm.nih.gov/pubmed/17183312. Accessed 1 November 2012.
-
(2006)
Nature
, vol.444
, pp. 1027-1031
-
-
Turnbaugh, P.J.1
Ley, R.E.2
Mahowald, M.A.3
Magrini, V.4
Mardis, E.R.5
-
3
-
-
0025183708
-
Basic local alignment search tool
-
Available: Accessed 24 May 2013
-
Altschul SF, Gish W, Miller W, Myers EW, Lipman DJ (1990) Basic local alignment search tool. Journal of Molecular Biology 215: 403-410. Available: http://linkinghub.elsevier.com/retrieve/pii/S0022283605803602. Accessed 24 May 2013.
-
(1990)
Journal of Molecular Biology
, vol.215
, pp. 403-410
-
-
Altschul, S.F.1
Gish, W.2
Miller, W.3
Myers, E.W.4
Lipman, D.J.5
-
4
-
-
0030801002
-
Gapped BLAST and PSI-BLAST: A new generation of protein database search programs
-
Available: Accessed 19 February 2014
-
Altschul SF, Madden TL, Schäffer AA, Zhang J, Zhang Z, et al. (1997) Gapped BLAST and PSI-BLAST: a new generation of protein database search programs. Nucleic Acids Research 25: 3389-3402. Available: http://www. pubmedcentral.nih.gov/articlerender.fcgi?artid=146917&tool= pmcentrez&rendertype=abstract. Accessed 19 February 2014.
-
(1997)
Nucleic Acids Research
, vol.25
, pp. 3389-3402
-
-
Altschul, S.F.1
Madden, T.L.2
Schäffer, A.A.3
Zhang, J.4
Zhang, Z.5
-
5
-
-
0036226603
-
BLAT - The BLAST-Like Alignment Tool
-
doi:10.1101/gr.229202
-
Kent WJ (2002) BLAT - The BLAST-Like Alignment Tool. Genome Research 12: 656-664. doi:10.1101/gr.229202.
-
(2002)
Genome Research
, vol.12
, pp. 656-664
-
-
Kent, W.J.1
-
6
-
-
79955877212
-
RAPSearch: A fast protein similarity search tool for short reads
-
Available: Accessed 7 September 2011
-
Ye Y, Choi J-H, Tang H (2011) RAPSearch: a fast protein similarity search tool for short reads. BMC Bioinformatics 12: 159. Available: http://www.pubmedcentral.nih.gov/articlerender.fcgi?artid=3113943&tool= pmcentrez&rendertype=abstract. Accessed 7 September 2011.
-
(2011)
BMC Bioinformatics
, vol.12
, pp. 159
-
-
Ye, Y.1
Choi, J.-H.2
Tang, H.3
-
7
-
-
84855167751
-
RAPSearch2: A fast and memory-efficient protein similarity search tool for next-generation sequencing data
-
Available: Accessed 25 May 2013
-
Zhao Y, Tang H, Ye Y (2012) RAPSearch2: a fast and memory-efficient protein similarity search tool for next-generation sequencing data. Bioinformatics 28: 125-126. Available: http://bioinformatics.oxfordjournals.org/ content/28/1/125. Accessed 25 May 2013.
-
(2012)
Bioinformatics
, vol.28
, pp. 125-126
-
-
Zhao, Y.1
Tang, H.2
Ye, Y.3
-
8
-
-
85028161017
-
Suffix arrays: A new method for on-line string searches
-
Society for Industrial and Applied Mathematics. Available: Accessed 2010 November 8
-
Manber U, Myers G (1990) Suffix arrays: a new method for on-line string searches. Proceedings of the first annual ACM-SIAM symposium on Discrete algorithms. Society for Industrial and Applied Mathematics. 319-327. Available: http://portal.acm.org/citation.cfm?id=320176.320218&coll=portal&dl= ACM&type=series&idx=SERIES422&part=series&WantType= Proceedings&title=Symposium. Accessed 2010 November 8.
-
(1990)
Proceedings of the First Annual ACM-SIAM Symposium on Discrete Algorithms
, pp. 319-327
-
-
Manber, U.1
Myers, G.2
-
9
-
-
78651415181
-
GPU-BLAST: Using graphics processors to accelerate protein sequence alignment
-
Available: Accessed 013 November 8
-
Vouzis PD, Sahinidis NV (2011) GPU-BLAST: using graphics processors to accelerate protein sequence alignment. Bioinformatics 27: 182-188. Available: http://www.pubmedcentral.nih.gov/articlerender.fcgi?artid=3018811&tool= pmcentrez&rendertype=abstract. Accessed 013 November 8.
-
(2011)
Bioinformatics
, vol.27
, pp. 182-188
-
-
Vouzis, P.D.1
Sahinidis, N.V.2
-
10
-
-
74549131031
-
Inexact Local Alignment Search over Suffix Arrays
-
Available: Accessed 2013 July 12
-
Ghodsi M, Pop M (2009) Inexact Local Alignment Search over Suffix Arrays. Proceedings IEEE International Conference on Bioinformatics and Biomedicine 2009: 83-97. Available: http://www.pubmedcentral.nih.gov/articlerender.fcgi? artid=3029072&tool=pmcentrez&rendertype=abstract. Accessed 2013 July 12.
-
(2009)
Proceedings IEEE International Conference on Bioinformatics and Biomedicine 2009
, pp. 83-97
-
-
Ghodsi, M.1
Pop, M.2
-
11
-
-
0033982936
-
KEGG: Kyoto Encyclopedia of Genes and Genomes
-
Available: Accessed 2013 May 27
-
Kanehisa M (2000) KEGG: Kyoto Encyclopedia of Genes and Genomes. Nucleic Acids Research 28: 27-30. Available: http://www.nar.oupjournals.org/cgi/doi/10. 1093/nar/27.1.29. Accessed 2013 May 27.
-
(2000)
Nucleic Acids Research
, vol.28
, pp. 27-30
-
-
Kanehisa, M.1
-
12
-
-
84858983547
-
KEGG for integration and interpretation of large-scale molecular data sets
-
Available: Accessed 2013 May 22
-
Kanehisa M, Goto S, Sato Y, Furumichi M, Tanabe M (2012) KEGG for integration and interpretation of large-scale molecular data sets. Nucleic Acids Research 40: D109-14. Available: http://www.pubmedcentral.nih.gov/ articlerender.fcgi?artid=3245020&tool=pmcentrez&rendertype=abstract. Accessed 2013 May 22.
-
(2012)
Nucleic Acids Research
, vol.40
-
-
Kanehisa, M.1
Goto, S.2
Sato, Y.3
Furumichi, M.4
Tanabe, M.5
-
13
-
-
84862276328
-
Structure, function and diversity of the healthy human microbiome
-
The Human Microbiome Project Consortium Available: Accessed 2014 January 20
-
The Human Microbiome Project Consortium (2012) Structure, function and diversity of the healthy human microbiome. Nature 486: 207-214. Available: http://www.pubmedcentral.nih.gov/articlerender.fcgi?artid=3564958&tool= pmcentrez&rendertype=abstract. Accessed 2014 January 20.
-
(2012)
Nature
, vol.486
, pp. 207-214
-
-
-
14
-
-
0025950944
-
Searching protein sequence libraries: Comparison of the sensitivity and selectivity of the Smith-Waterman and FASTA algorithms
-
doi:10.1016/0888-7543(91)90071-L
-
Pearson WR (1991) Searching protein sequence libraries: Comparison of the sensitivity and selectivity of the Smith-Waterman and FASTA algorithms. Genomics 11: 635-650. doi:10.1016/0888-7543(91)90071-L.
-
(1991)
Genomics
, vol.11
, pp. 635-650
-
-
Pearson, W.R.1
-
15
-
-
27144489108
-
Protein database searches using compositionally adjusted substitution matrices
-
Available: Accessed 2011 August 3
-
Altschul SF, Wootton JC, Gertz EM, Agarwala R, Morgulis A, et al. (2005) Protein database searches using compositionally adjusted substitution matrices. The FEBS journal 272: 5101-5109. Available: http://www.pubmedcentral.nih.gov/ articlerender.fcgi?artid=1343503&tool=pmcentrez&rendertype=abstract. Accessed 2011 August 3.
-
(2005)
The FEBS Journal
, vol.272
, pp. 5101-5109
-
-
Altschul, S.F.1
Wootton, J.C.2
Gertz, E.M.3
Agarwala, R.4
Morgulis, A.5
|