메뉴 건너뛰기




Volumn 12, Issue 2, 2016, Pages

Ten Simple Rules for Selecting a Bio-ontology

Author keywords

[No Author keywords available]

Indexed keywords

BIO-ONTOLOGIES; SIMPLE++;

EID: 84959489622     PISSN: 1553734X     EISSN: 15537358     Source Type: Journal    
DOI: 10.1371/journal.pcbi.1004743     Document Type: Editorial
Times cited : (28)

References (17)
  • 1
    • 58549112996 scopus 로고    scopus 로고
    • Bioinformatics enrichment tools: paths toward the comprehensive functional analysis of large gene lists
    • 19033363, .;():–, 10.1093/nar/gkn923
    • Huang DW, Sherman BT, Lempicki RA, Bioinformatics enrichment tools: paths toward the comprehensive functional analysis of large gene lists. Nucleic Acids Research. 2009;37(1):1–13. http://nar.oxfordjournals.org/content/37/1/1.abstract. doi: 10.1093/nar/gkn92319033363
    • (2009) Nucleic Acids Research , vol.37 , Issue.1 , pp. 1-13
    • Huang, D.W.1    Sherman, B.T.2    Lempicki, R.A.3
  • 2
    • 35948989284 scopus 로고    scopus 로고
    • The OBO Foundry: coordinated evolution of ontologies to support biomedical data integration
    • 17989687, ..;():–
    • Smith B, Ashburner M, Rosse C, Bard J, Bug W, Ceusters W, et al. The OBO Foundry: coordinated evolution of ontologies to support biomedical data integration. Nature Biotechnology. 2007November;25(11):1251–1255. doi: 10.1038/nbt134617989687
    • (2007) Nature Biotechnology , vol.25 , Issue.11 , pp. 1251-1255
    • Smith, B.1    Ashburner, M.2    Rosse, C.3    Bard, J.4    Bug, W.5    Ceusters, W.6
  • 5
    • 67849128700 scopus 로고    scopus 로고
    • BioPortal: ontologies and integrated data resources at the click of a mouse
    • ..;():–
    • Noy NF, Shah NH, Whetzel PL, Dai B, Dorf M, Griffith N, et al. BioPortal: ontologies and integrated data resources at the click of a mouse. Nucleic Acids Research. 2009;37(suppl 2):W170–W173.
    • (2009) Nucleic Acids Research , vol.37 , pp. W170-W173
    • Noy, N.F.1    Shah, N.H.2    Whetzel, P.L.3    Dai, B.4    Dorf, M.5    Griffith, N.6
  • 6
    • 84859699832 scopus 로고    scopus 로고
    • Disease Ontology: a backbone for disease semantic integration
    • ..;():–
    • Schriml LM, Arze C, Nadendla S, Chang YWW, Mazaitis M, Felix V, et al. Disease Ontology: a backbone for disease semantic integration. Nucleic Acids Research. 2012;40(D1):D940–D946. http://nar.oxfordjournals.org/content/40/D1/D940.abstract.
    • (2012) Nucleic Acids Research , vol.40 , Issue.D1 , pp. D940-D946
    • Schriml, L.M.1    Arze, C.2    Nadendla, S.3    Chang, Y.W.W.4    Mazaitis, M.5    Felix, V.6
  • 7
    • 34250625734 scopus 로고    scopus 로고
    • Phenotype ontologies: the bridge between genomics and evolution
    • 17416439, ..;():–
    • Mabee PM, Ashburner M, Cronk Q, Gkoutos GV, Haendel M, Segerdell E, et al. Phenotype ontologies: the bridge between genomics and evolution. Trends in Ecology and Evolution. 2007;22(7):345–350. http://www.sciencedirect.com/science/article/pii/S0169534707001048. 17416439
    • (2007) Trends in Ecology and Evolution , vol.22 , Issue.7 , pp. 345-350
    • Mabee, P.M.1    Ashburner, M.2    Cronk, Q.3    Gkoutos, G.V.4    Haendel, M.5    Segerdell, E.6
  • 8
    • 84856316836 scopus 로고    scopus 로고
    • Uberon, an integrative multi-species anatomy ontology
    • 22293552, ..;():
    • Mungall CJ, Torniai C, Gkoutos GV, Lewis SE, Haendel MA, et al. Uberon, an integrative multi-species anatomy ontology. Genome Biol. 2012;13(1):R5. doi: 10.1186/gb-2012-13-1-r522293552
    • (2012) Genome Biol , vol.13 , Issue.1 , pp. R5
    • Mungall, C.J.1    Torniai, C.2    Gkoutos, G.V.3    Lewis, S.E.4    Haendel, M.A.5
  • 9
    • 77951973818 scopus 로고    scopus 로고
    • Modeling sample variables with an Experimental Factor Ontology
    • 20200009, ..;():–, 10.1093/bioinformatics/btq099
    • Malone J, Holloway E, Adamusiak T, Kapushesky M, Zheng J, Kolesnikov N, et al. Modeling sample variables with an Experimental Factor Ontology. Bioinformatics. 2010;26(8):1112–1118. http://bioinformatics.oxfordjournals.org/content/26/8/1112.abstract. doi: 10.1093/bioinformatics/btq09920200009
    • (2010) Bioinformatics , vol.26 , Issue.8 , pp. 1112-1118
    • Malone, J.1    Holloway, E.2    Adamusiak, T.3    Kapushesky, M.4    Zheng, J.5    Kolesnikov, N.6
  • 11
    • 21944445759 scopus 로고    scopus 로고
    • An ontology for cell types
    • 15693950, .;():
    • Bard J, Rhee SY, Ashburner M, An ontology for cell types. Genome biology. 2005;6(2):R21. 15693950
    • (2005) Genome biology , vol.6 , Issue.2 , pp. R21
    • Bard, J.1    Rhee, S.Y.2    Ashburner, M.3
  • 12
    • 84927925018 scopus 로고    scopus 로고
    • The Software Ontology (SWO): a resource for reproducibility in biomedical data analysis, curation and digital preservation
    • ..;()
    • Malone J, Brown A, Lister AL, Ison J, Hull D, Parkinson H, et al. The Software Ontology (SWO): a resource for reproducibility in biomedical data analysis, curation and digital preservation. Journal of Biomedical Semantics. 2014;5(25).
    • (2014) Journal of Biomedical Semantics , vol.5 , Issue.25
    • Malone, J.1    Brown, A.2    Lister, A.L.3    Ison, J.4    Hull, D.5    Parkinson, H.6
  • 14
    • 84883246246 scopus 로고    scopus 로고
    • Scientific competency questions as the basis for semantically enriched open pharmacological space development
    • 23702085, ..;():–
    • Azzaoui K, Jacoby E, Senger S, Rodríguez EC, Loza M, Zdrazil B, et al. Scientific competency questions as the basis for semantically enriched open pharmacological space development. Drug Discovery Today. 2013;18(17–18):843–852. doi: 10.1016/j.drudis.2013.05.00823702085
    • (2013) Drug Discovery Today , vol.18 , Issue.17-18 , pp. 843-852
    • Azzaoui, K.1    Jacoby, E.2    Senger, S.3    Rodríguez, E.C.4    Loza, M.5    Zdrazil, B.6
  • 15
    • 84873151689 scopus 로고    scopus 로고
    • Measuring the level of activity in community built bio-ontologies
    • 22554701, .;():–, 10.1016/j.jbi.2012.04.002
    • Malone J, Stevens R, Measuring the level of activity in community built bio-ontologies. Journal of Biomedical Informatics. 2013;46(1):5–14. http://www.sciencedirect.com/science/article/pii/S153204641200055X. doi: 10.1016/j.jbi.2012.04.00222554701
    • (2013) Journal of Biomedical Informatics , vol.46 , Issue.1 , pp. 5-14
    • Malone, J.1    Stevens, R.2
  • 16
    • 84959575245 scopus 로고    scopus 로고
    • .;
    • OWL Working Group WOWL 2 Web Ontology Language: Document Overview. W3C; 11December2012. http://www.w3.org/TR/owl2-overview/.
    • (2012) W3C
  • 17
    • 84901373612 scopus 로고    scopus 로고
    • Ten Simple Rules for the Care and Feeding of Scientific Data
    • 24763340, ..;():
    • Goodman A, Pepe A, Blocker AW, Borgman CL, Cranmer K, Crosas M, et al. Ten Simple Rules for the Care and Feeding of Scientific Data. PLoS Comput Biol. 2014;10(4):e1003542. doi: 10.1371/journal.pcbi.100354224763340
    • (2014) PLoS Comput Biol , vol.10 , Issue.4 , pp. e1003542
    • Goodman, A.1    Pepe, A.2    Blocker, A.W.3    Borgman, C.L.4    Cranmer, K.5    Crosas, M.6


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.