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Volumn 5, Issue 1, 2014, Pages

The Software Ontology (SWO): A resource for reproducibility in biomedical data analysis, curation and digital preservation

Author keywords

[No Author keywords available]

Indexed keywords


EID: 84927925018     PISSN: None     EISSN: 20411480     Source Type: Journal    
DOI: 10.1186/2041-1480-5-25     Document Type: Article
Times cited : (75)

References (57)
  • 6
    • 77955904899 scopus 로고    scopus 로고
    • The scientific method in practice: reproducibility in the computational sciences
    • MIT Sloan Research Paper No. 4773-10
    • Stodden V. The scientific method in practice: reproducibility in the computational sciences. 2010, MIT Sloan Research Paper No. 4773-10.
    • (2010)
    • Stodden, V.1
  • 7
    • 82755174123 scopus 로고    scopus 로고
    • Reproducible research in computational science
    • Peng RD. Reproducible research in computational science. Science 2011, 334(6060):1226-1227. [http://www.sciencemag.org/content/334/6060/1226.abstract].
    • (2011) Science , vol.334 , Issue.6060 , pp. 1226-1227
    • Peng, R.D.1
  • 8
    • 33747833111 scopus 로고    scopus 로고
    • Taverna: a tool for building and running workflows of services
    • Web Server issue
    • Hull D, Wolstencroft K, Stevens R, Goble C, Pocock MR, Li P, Oinn T. Taverna: a tool for building and running workflows of services. Nucleic Acids Res 2006, 34:729-732. [http://www.hubmed.org/display.cgi?uids=16845108] [Web Server issue].
    • (2006) Nucleic Acids Res , vol.34 , pp. 729-732
    • Hull, D.1    Wolstencroft, K.2    Stevens, R.3    Goble, C.4    Pocock, M.R.5    Li, P.6    Oinn, T.7
  • 9
    • 77955801615 scopus 로고    scopus 로고
    • Galaxy: a comprehensive approach for supporting accessible, reproducible, and transparent computational research in the life sciences
    • Goecks J, Nekrutenko A, Taylor J, Team TG. Galaxy: a comprehensive approach for supporting accessible, reproducible, and transparent computational research in the life sciences. Genome Biol 2010, 11(8):R86. [http://genomebiology.com/2010/11/8/R86].
    • (2010) Genome Biol , vol.11 , Issue.8
    • Goecks, J.1    Nekrutenko, A.2    Taylor, J.3    Team, T.G.4
  • 11
    • 59949087987 scopus 로고    scopus 로고
    • The design and realisation of the myExperiment Virtual Research Environment for social sharing of workflows
    • De Roure D, Goble C, Stevens R. The design and realisation of the myExperiment Virtual Research Environment for social sharing of workflows. Future Generation Comput Syst 2009, 25:561-567.
    • (2009) Future Generation Comput Syst , vol.25 , pp. 561-567
    • De Roure, D.1    Goble, C.2    Stevens, R.3
  • 12
    • 84927930204 scopus 로고    scopus 로고
    • PROV model primer
    • PROV model primer. [http://www.w3.org/TR/prov-primer/].
  • 14
    • 43749083658 scopus 로고    scopus 로고
    • Automatic annotation of Web services based on workflow definitions
    • 11:1-11:34
    • Belhajjame K, Embury SM, Paton NW, Stevens R, Goble CA. Automatic annotation of Web services based on workflow definitions. ACM Trans Web 2008, 2(2):11:1-11:34. [http://doi.acm.org/10.1145/1346237.1346239].
    • (2008) ACM Trans Web , vol.2 , Issue.2
    • Belhajjame, K.1    Embury, S.M.2    Paton, N.W.3    Stevens, R.4    Goble, C.A.5
  • 15
    • 84927946582 scopus 로고    scopus 로고
    • Description of a Project Wiki Homepage
    • Description of a Project Wiki Homepage. [https://github.com/edumbill/doap/wiki].
  • 20
    • 84927947543 scopus 로고    scopus 로고
    • Information artifact ontologyr
    • Information artifact ontologyr. [http://purl.obolibrary.org/obo/iao].
  • 31
    • 79959471969 scopus 로고    scopus 로고
    • BioAssay Ontology (BAO): a semantic description of bioassays and high-throughput screening results
    • Visser U, Abeyruwan S, Vempati U, Smith R, Lemmon V, Schurer S. BioAssay Ontology (BAO): a semantic description of bioassays and high-throughput screening results. BMC Bioinformatics 2011, 12:257. [http://www.biomedcentral.com/1471-2105/12/257].
    • (2011) BMC Bioinformatics , vol.12 , pp. 257
    • Visser, U.1    Abeyruwan, S.2    Vempati, U.3    Smith, R.4    Lemmon, V.5    Schurer, S.6
  • 35
    • 84927950133 scopus 로고    scopus 로고
    • BioMedBridges Consortium
    • BioMedBridges Consortium. [http://www.biomedbridges.eu/l].
  • 36
    • 84927939777 scopus 로고    scopus 로고
    • BioMedBridges tool registry
    • BioMedBridges tool registry. [http://tinyurl.com/bmbtoolsui].
  • 38
    • 46449139028 scopus 로고    scopus 로고
    • Principles behind the Agile Manifesto
    • Principles behind the Agile Manifesto. [http://agilemanifesto.org/principles.html].
  • 39
    • 84897725479 scopus 로고
    • The role of competency questions in enterprise engineering
    • Springer, Rolstadås A
    • Grüninger M, Fox MS. The role of competency questions in enterprise engineering. Benchmarking, Theory and Practice 1995, 22-31. Springer, Rolstadås A, doi:10.1007/978-0-387-34847-6_3.
    • (1995) Benchmarking, Theory and Practice , pp. 22-31
    • Grüninger, M.1    Fox, M.S.2
  • 40
    • 80052980638 scopus 로고    scopus 로고
    • Democracy unleashed: bringing agility to citizen engagement
    • 7-13 August, 2011, Salt Lake City, Utah: IEEE
    • Kirk G. Democracy unleashed: bringing agility to citizen engagement. AGILE Conference: 7-13 August, 2011 2011, 209-215. Salt Lake City, Utah: IEEE.
    • (2011) AGILE Conference , pp. 209-215
    • Kirk, G.1
  • 42
    • 84927919127 scopus 로고    scopus 로고
    • Software ontology project
    • Software ontology project. [http://softwareontology.wordpress.com].
  • 44
    • 84927933604 scopus 로고    scopus 로고
    • User sourced competency questions for software
    • User sourced competency questions for software. [http://softwareontology.wordpress.com/2011/04/01/user-sourced-competency-questions-for-software/].
  • 46
    • 84878893739 scopus 로고    scopus 로고
    • BioNerDS: exploring bioinformatics' database and software use through literature mining
    • Duck G, Nenadic G, Brass A, Robertson D, Stevens R. bioNerDS: exploring bioinformatics' database and software use through literature mining. BMC Bioinformatics 2013, 14:194. [http://www.biomedcentral.com/1471-2105/14/194].
    • (2013) BMC Bioinformatics , vol.14 , pp. 194
    • Duck, G.1    Nenadic, G.2    Brass, A.3    Robertson, D.4    Stevens, R.5
  • 48
    • 84927945954 scopus 로고    scopus 로고
    • SWO EDAM merge modifying EDAM inOWL. [http://softwareontology.wordpress.com/2012/07/25/swo-edam-merge-modifying-edam-in-owl/].
  • 49
    • 84927944232 scopus 로고    scopus 로고
    • SWO EDAM merge overview. [http://softwareontology.wordpress.com/2012/07/25/swo-edam-merge-overview/].
  • 50
    • 84927945099 scopus 로고    scopus 로고
    • SWO refactoring objective. [http://softwareontology.wordpress.com/2013/07/04/refactoring-objective-specification-hierarchy/].
  • 51
    • 84947570401 scopus 로고    scopus 로고
    • Modularisation of domain ontologies implemented in description logics and related formalisms including OWL
    • New York, NY, USA: ACM Press
    • Rector AL. Modularisation of domain ontologies implemented in description logics and related formalisms including OWL. K-CAP '03: Proceedings of the 2nd international conference on Knowledge capture 2003, 121-128. New York, NY, USA: ACM Press, [http://dx.doi.org/10.1145/945645.945664].
    • (2003) K-CAP '03: Proceedings of the 2nd international conference on Knowledge capture , pp. 121-128
    • Rector, A.L.1
  • 52
    • 84927920080 scopus 로고    scopus 로고
    • ELIXIR. [http://www.elixir-europe.org/].
  • 54
    • 84927925232 scopus 로고    scopus 로고
    • Gene expression atlas RDF project
    • Gene expression atlas RDF project. [http://www.ebi.ac.uk/fgpt/atlasrdf/index.html].
  • 56
    • 84927915982 scopus 로고    scopus 로고
    • James Malone's EBI blog
    • James Malone's EBI blog. [http://drjamesmalone.blogspot.co.uk/].
  • 57
    • 84927940039 scopus 로고    scopus 로고
    • CLI-mate
    • CLI-mate. [http://cli-mate.lumc.nl/].


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.