A workflow to process 3D+time microscopy images of developing organisms and reconstruct their cell lineage

Nature Communications

Volumn 7, Issue , 2016, Pages

  Faure, Emmanuel ^a,b,i   Savy, Thierry ^a,b,c   Rizzi, Barbara ^a,d,j   Melani, Camilo ^a,c,d,k   Stašová, Olga ^e   Fabrèges, Dimitri ^a,c   Špir, Róbert ^e   Hammons, Mark ^a,c   Čúnderlík, Róbert ^e   Recher, Gaëlle ^a   Lombardot, Benoît ^a   Duloquin, Louise ^a   Colin, Ingrid ^a   Kollár, Jozef ^e   Desnoulez, Sophie ^a   Affaticati, Pierre ^a,j   Maury, Benoît ^a   Boyreau, Adeline ^a,c   Nief, Jean Yves ^f   Calvat, Pascal ^f   Vernier, Philippe ^a,l   Frain, Monique ^a,c   Lutfalla, Georges ^a   Kergosien, Yannick ^a,c,g   Suret, Pierre ^h   Remešíková, Mariana ^e   Doursat, René ^a,b,c,m   Sarti, Alessandro ^a,d   Mikula, Karol ^e   Peyriéras, Nadine ^a,c   Bourgine, Paul ^a,b,c   more..

^a CNRS   (France)

^b Centre de Recherche en Epistemologie Appliquee Ecole Polytechnique   (France)

^c UNIVERSITÉ PARIS SACLAY   (France)

^d UNIVERSITY OF BOLOGNA   (Italy)

^e SLOVAK UNIVERSITY OF TECHNOLOGY   (Slovakia)

^f CENTRE DE CALCUL DE L INSTITUT NATIONAL DE PHYSIQUE NUCLEAIRE ET DE PHYSIQUE DES PARTICULES   (France)

^g UNIVERSITÉ PARIS 13   (France)

^h UNIV LILLE   (France)

ⁱ UNIVERSITÉ DE TOULOUSE   (France)

^j Université Paris Saclay   (France)

^k UNIVERSIDAD DE BUENOS AIRES   (Argentina)

^l CNRS   (France)

^m MANCHESTER METROPOLITAN UNIVERSITY   (United Kingdom)

more..

Author keywords

[No Author keywords available]

Indexed keywords

ALGORITHM; CELLS AND CELL COMPONENTS; DEVELOPMENTAL STAGE; EMBRYONIC DEVELOPMENT; IMAGE ANALYSIS; IMAGE PROCESSING; MICROSCOPY; NUMERICAL MODEL; RECONSTRUCTION; SOFTWARE; VISUALIZATION;

ANIMAL EXPERIMENT; ASCIDIACEA; CELL LINEAGE; CELL NUCLEUS; CELL TRACKING; COMPUTER PROGRAM; EMBRYO; EMBRYOLOGY; FILTRATION; MEMBRANE; MICROSCOPY; NONHUMAN; SEA URCHIN; STATISTICAL MODEL; VALIDATION PROCESS; WORKFLOW; ZEBRA FISH; ANIMAL; CELL PROLIFERATION; COMPARATIVE STUDY; PROCEDURES; THREE DIMENSIONAL IMAGING; UROCHORDATA; VALIDATION STUDY;

ASCIDIA; DANIO RERIO; ECHINOIDEA;

ANIMALS; CELL LINEAGE; CELL PROLIFERATION; EMBRYOLOGY; IMAGING, THREE-DIMENSIONAL; MICROSCOPY; SEA URCHINS; UROCHORDATA; WORKFLOW; ZEBRAFISH;

EID: 84959423064     PISSN: None     EISSN: 20411723     Source Type: Journal    
DOI: 10.1038/ncomms9674     Document Type: Article

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