Optimizing viral discovery in bats

PLoS ONE

Volumn 11, Issue 2, 2016, Pages

  Young, Cristin C W ^a   Olival, Kevin J ^b  

^a UNIVERSITY OF CALIFORNIA   (United States)

^b ECOHEALTH ALLIANCE   (United States)

Author keywords

[No Author keywords available]

Indexed keywords

ARTICLE; BAT; HOST; NONHUMAN; POLYMERASE CHAIN REACTION; PROCESS OPTIMIZATION; TAXONOMY; VIRUS DETECTION; VIRUS IDENTIFICATION; ANIMAL; CLASSIFICATION; INFORMATION PROCESSING; ISOLATION AND PURIFICATION; PHYLOGENY; PROBABILITY; SPECIES DIFFERENCE; STATISTICAL MODEL; VETERINARY; VIROLOGY; VIRUS; VIRUS DISEASES; VIRUS GENOME; ZOONOSIS;

ANIMALS; CHIROPTERA; DATA COLLECTION; GENOME, VIRAL; LINEAR MODELS; PHYLOGENY; POLYMERASE CHAIN REACTION; PROBABILITY; SPECIES SPECIFICITY; VIRUS DISEASES; VIRUSES; ZOONOSES;

EID: 84959420395     PISSN: None     EISSN: 19326203     Source Type: Journal    
DOI: 10.1371/journal.pone.0149237     Document Type: Article

References (42)

1. Morse SS, Mazet JA, Woolhouse M, Parrish CR, Carroll D, Karesh WB, et al. Prediction and prevention of the next pandemic zoonosis. The Lancet. 2012; 380(9857):1956-65.
2. Olival KJ, Hayman DT. Filoviruses in Bats: Current Knowledge and Future Directions. Viruses. 2014; 6 (4):1759-88. doi: 10.3390/v6041759 PMID: 24747773
3. Memish ZA, Mishra N, Olival KJ, Fagbo SF, Kapoor V, Epstein JH, et al. Middle East respiratory syndrome coronavirus in bats, Saudi Arabia. Emerg Infect Dis. 2013; 19(11):1819-23. doi: 10.3201/eid1911.131172 PMID: 24206838; PubMed Central PMCID: PMC3837665.
4. Ge XY, Li JL, Yang XL, Chmura AA, Zhu G, Epstein JH, et al. Isolation and characterization of a bat SARS-like coronavirus that uses the ACE2 receptor. Nature. 2013; 503(7477):535-8. doi: 10.1038/nature12711 PMID: 24172901.
5. Rahman SA, Hassan SS, Olival KJ, Mohamed M, Chang LY, Hassan L, et al. Characterization of Nipah virus from naturally infected Pteropus vampyrus bats, Malaysia. Emerg Infect Dis. 2010; 16(12):1990-3. doi: 10.3201/eid1612.091790 PMID: 21122240; PubMed Central PMCID: PMC3294568.
6. Wynne JW, Wang LF. Bats and viruses: friend or foe? PLoS Pathog. 2013; 9(10):e1003651. doi: 10.1371/journal.ppat.1003651 PMID: 24204253; PubMed Central PMCID: PMC3814676.
7. Pourrut X, Souris M, Towner JS, Rollin PE, Nichol ST, Gonzalez J-P, et al. Large serological survey showing cocirculation of Ebola and Marburg viruses in Gabonese bat populations, and a high seroprevalence of both viruses in Rousettus aegyptiacus. BMC infectious diseases. 2009; 9:159. doi: 10.1186/1471-2334-9-159 PMID: 19785757.
8. Wilson DE, Reeder DM. Mammal species of the world: a taxonomic and geographic reference. 3rd ed. Baltimore: Johns Hopkins University Press; 2005.
9. Luis AD, Hayman DTS, O'Shea TJ, Cryan PM, Gilbert AT, Pulliam JRC, et al. A comparison of bats and rodents as reservoirs of zoonotic viruses: are bats special? Proceedings Biological sciences/The Royal Society. 2013; 280:20122753. doi: 10.1098/rspb.2012.2753 PMID: 23378666.
10. O'Shea TJ, Cryan PM, Cunningham AA, Fooks AR, Hayman DT, Luis AD, et al. Bat flight and zoonotic viruses. Emerg Infect Dis. 2014; 20(5):741-5. doi: 10.3201/eid2005.130539 PMID: 24750692; PubMed Central PMCID: PMC4012789.
11. Olival KJ, Epstein JH, Wang L-F, Field HE, Daszak P. Are bats exceptional viral reservoirs. New directions in conservation medicine: Applied cases of ecological health. 2012:195-212.
12. Wang LF, Walker PJ, Poon LL. Mass extinctions, biodiversity and mitochondrial function: are bats 'special' as reservoirs for emerging viruses? Curr Opin Virol. 2011; 1(6):649-57. doi: 10.1016/j.coviro.2011. 10.013 PMID: 22440923.
13. Luis AD, O'Shea TJ, Hayman DT, Wood JL, Cunningham AA, Gilbert AT, et al. Network analysis of host-virus communities in bats and rodents reveals determinants of cross-species transmission. Ecology letters. 2015; 18(11):1153-62.
14. Dobson AP. Virology. What links bats to emerging infectious diseases? Science. 2005; 310 (5748):628-9. doi: 10.1126/science.1120872 PMID: 16254175.
15. Daszak P, Bogich T, Hosseini P, Zambrana-Torrellio C, Olival K, Mazet J, et al. Modeling Risk: The Use of Geo-Temporal Models for Focusing Risk Reduction Interventions. EcoHealth. 2011; 7:S135-S. PMID: WOS:000287901500239.
16. IUCN Red List of Threatened Species [Internet]. IUCN. 2013. Available from: http://www.iucnredlist.org/.
17. Sonntag M, Mühldorfer K, Speck S, Wibbelt G, Kurth A. New adenovirus in bats, Germany. Emerging infectious diseases. 2009; 15:2052-5. doi: 10.3201/eid1512.090646 PMID: 19961700.
18. Drexler JF, Corman VM, Muller M, Maganga G, Vallo P, Binger T, et al. Bats host major mammalian paramyxoviruses. Nature communications. 2012; 3:796. doi: 10.1038/ncomms1796 PMID: 22531181
19. Kurth A, Kohl C, Brinkmann A, Ebinger A, Harper JA, Wang L-F, et al. Novel paramyxoviruses in freeranging European bats. PloS one. 2012; 7:e38688. doi: 10.1371/journal.pone.0038688 PMID: 22737217
20. Kohl C, Lesnik R, Brinkmann A, Ebinger A, Radonic A, Nitsche A, et al. Isolation and characterization of three mammalian orthoreoviruses from European bats. PloS one. 2012; 7:e43106. doi: 10.1371/journal.pone.0043106 PMID: 22905211
21. Kuzmin IV, Mayer A, Niezgoda M, Markotter W, Agwanda B, Breiman RF, et al. Shimoni bat virus, a new representative of the Lyssavirus genus. Virus research. 2010; 149:197-210. doi: 10.1016/j. virusres.2010.01.018 PMID: 20138934
22. Kuzmin IV, Niezgoda M, Franka R, Agwanda B, MarkotterW, Breiman RF, et al. Marburg virus in fruit bat, Kenya. Emerging infectious diseases. 2010; 16:352-4. doi: 10.3201/eid1602.091269 PMID: 20113584.
23. Lelli D, Moreno A, Lavazza A, Bresaola M, Canelli E, Boniotti M, et al. Identification of Mammalian orthoreovirus type 3 in Italian bats. Zoonoses and public health. 2013; 60:84-92. doi: 10.1111/zph. 12001 PMID: 22931153
24. Emerson GL, Nordhausen R, Garner MM, Huckabee JR, Johnson S, Wohrle RD, et al. Novel Poxvirus in Big Brown Bats, Northwestern United States-Vol. 19 No. 6-June 2013-Emerging Infectious Disease journal-CDC. Emerg Infect Dis. 2013; 19:1002-4. doi: 10.3201/eid1906.121713 PMID: 23735421
25. International Committee on Taxonomy of Viruses., King AMQ. Virus taxonomy: classification and nomenclature of viruses: ninth report of the International Committee on Taxonomy of Viruses. London; Waltham, MA: Academic Press; 2012. x, 1327 p. p.
26. Rodríguez G. Generalized Linear Models Princeton University2013. Available from: http://data. princeton.edu/R/glms.html.
27. R Development Core Team R. R: A language and environment for statistical computing. Vienna, Austria: R Foundation for Statistical Computing; 2013.
28. Turmelle AS, Olival KJ. Correlates of Viral Richness in Bats (Order Chiroptera). EcoHealth. 2009; 6 (4):522-39. PMID: WOS:000280071700006. doi: 10.1007/s10393-009-0263-8
29. Gay N, Olival KJ, Bumrungsri S, Siriaroonrat B, Bourgarel M, Morand S. Parasite and viral species richness of Southeast Asian bats: Fragmentation of area distribution matters. International journal for parasitology Parasites and wildlife. 2014; 3(2):161-70. doi: 10.1016/j.ijppaw.2014.06.003 PMID: 25161915; PubMed Central PMCID: PMC4142259.
30. Calisher CH, Tesh RB. Two misleading words in reports of virus discovery: little things mean a lot. Archives of virology. 2014; 159(8):2189-91. doi: 10.1007/s00705-014-2008-4 PMID: 24532301.
31. Bossart KN, McEachern JA, Hickey AC, Choudhry V, Dimitrov DS, Eaton BT, et al. Neutralization assays for differential henipavirus serology using Bio-Plex protein array systems. Journal of virological methods. 2007; 142(1-2):29-40. doi: 10.1016/j.jviromet.2007.01.003 PMID: 17292974.
32. Burbelo PD, Ching KH, Klimavicz CM, Iadarola MJ. Antibody profiling by Luciferase Immunoprecipitation Systems (LIPS). Journal of visualized experiments: JoVE. 2009;(32:). doi: 10.3791/1549 PMID: 19812534; PubMed Central PMCID: PMC3164068.
33. Gilbert AT, Fooks AR, Hayman DT, Horton DL, Muller T, Plowright R, et al. Deciphering serology to understand the ecology of infectious diseases in wildlife. EcoHealth. 2013; 10(3):298-313. doi: 10.1007/s10393-013-0856-0 PMID: 23918033.
34. Anthony SJ, Epstein JH, Murray KA, Navarrete-Macias I, Zambrana-Torrelio CM, Solovyov A, et al. A strategy to estimate unknown viral diversity in mammals. mBio. 2013; 4(5):e00598-13. doi: 10.1128/mBio.00598-13 PMID: 24003179
35. Amman BR, Jones ME, Sealy TK, Uebelhoer LS, Schuh AJ, Bird BH, et al. Oral shedding of marburg virus in experimentally infected egyptian fruit bats (rousettus aegyptiacus). Journal of wildlife diseases. 2015; 51(1):113-24. doi: 10.7589/2014-08-198 PMID: 25375951.
36. Amengual B, Bourhy H, López-Roig M, Serra-Cobo J. Temporal dynamics of European bat Lyssavirus type 1 and survival of Myotis myotis bats in natural colonies. PloS one. 2007; 2:e566. doi: 10.1371/journal.pone.0000566 PMID: 17593965.
37. Banyard AC, Hayman D, Johnson N, McElhinney L, Fooks AR. Bats and lyssaviruses. Advances in virus research. 2011; 79:239-89. Epub 2011/05/24. doi: 10.1016/b978-0-12-387040-7.00012-3 PMID: 21601050.
38. Wacharapluesadee S, Boongird K, Wanghongsa S, Ratanasetyuth N, Supavonwong P, Saengsen D, et al. A longitudinal study of the prevalence of Nipah virus in Pteropus lylei bats in Thailand: evidence for seasonal preference in disease transmission. Vector borne and zoonotic diseases (Larchmont, NY). 2010; 10:183-90. doi: 10.1089/vbz.2008.0105 PMID: 19402762.
39. Briese T, Kapoor A, Mishra N, Jain K, Kumar A, Jabado OJ, et al. Virome Capture Sequencing Enables Sensitive Viral Diagnosis and Comprehensive Virome Analysis. mBio. 2015; 6(5):e01491-15. doi: 10.1128/mBio.01491-15 PMID: 26396248; PubMed Central PMCID: PMC4611031.
40. Lau SK, Li KS, Tsang AK, Shek CT, Wang M, Choi GK, et al. Recent transmission of a novel alphacoronavirus, bat coronavirus HKU10, from Leschenault's rousettes to pomona leaf-nosed bats: first evidence of interspecies transmission of coronavirus between bats of different suborders. Journal of virology. 2012; 86(21):11906-18. Epub 2012/08/31. doi: 10.1128/jvi.01305-12 PMID: 22933277; PubMed Central PMCID: PMCPMC3486284.
41. Woo PC, Lau SK, Lam CS, Lau CC, Tsang AK, Lau JH, et al. Discovery of seven novel Mammalian and avian coronaviruses in the genus deltacoronavirus supports bat coronaviruses as the gene source of alphacoronavirus and betacoronavirus and avian coronaviruses as the gene source of gammacoronavirus and deltacoronavirus. Journal of virology. 2012; 86(7):3995-4008. Epub 2012/01/27. doi: 10.1128/jvi.06540-11 PMID: 22278237; PubMed Central PMCID: PMCPMC3302495.
42. Wu Z, Ren X, Yang L, Hu Y, Yang J, He G, et al. Virome analysis for identification of novel mammalian viruses in bat species from Chinese provinces. Journal of virology. 2012; 86(20):10999-1012. Epub 2012/08/03. doi: 10.1128/jvi.01394-12 PMID: 22855479; PubMed Central PMCID: PMCPMC3457178.