AptaGUI - A graphical user interface for the efficient analysis of HT-SELEX data

Molecular Therapy Nucleic Acids

Volumn 4, Issue 10, 2015, Pages e257-

  Hoinka, Jan ^a   Dao, Phuong ^a   Przytycka, Teresa M ^a  

^a NATIONAL INSTITUTES OF HEALTH   (United States)

Author keywords

[No Author keywords available]

Indexed keywords

APTAMER;

AMINO ACID SEQUENCE; COMBINATORIAL CHEMISTRY; COMPUTER INTERFACE; LETTER; PRIORITY JOURNAL; STRUCTURE ANALYSIS;

EID: 84959356021     PISSN: None     EISSN: 21622531     Source Type: Journal    
DOI: 10.1038/mtna.2015.26     Document Type: Letter

References (6)

1. Bunka, DH and Stockley, PG (2006). Aptamers come of age - at last. Nat Rev Microbiol 4: 588-596.
2. Blind, M and Blank, M (2015). Aptamer selection technology and recent advances. Mol Ther Nucleic Acids 4, e223.
3. Hoinka, J, Berezhnoy, A, Sauna, ZE, Gilboa, E and Przytycka, TM. (2014). AptaCluster - A method to Cluster HT-SELEX Aptamer pools and lessons from its application. In: Sharan, R (ed). Research in Computational Molecular Biology (RECOMB) 2014, LNCS 8394. Springer: Berlin, Germany, pp. 115-128.
4. Hoinka, J, Berezhnoy, A, Dao, P, Sauna, ZE, Gilboa, E and Przytycka, TM (2015). Large scale analysis of the mutational landscape in HT-SELEX improves aptamer discovery. Nucleic Acids Res 43: 5699-5707.
5. Sükösd, Z, Knudsen, B, Kjems, J and Pedersen, CN (2012). PPfold 3.0: fast RNA secondary structure prediction using phylogeny and auxiliary data. Bioinformatics 28: 2691-2692.
6. Darty, K, Denise, A and Ponty, Y (2009). VARNA: interactive drawing and editing of the RNA secondary structure. Bioinformatics 25: 1974-1975.