SCOPUS 정보 검색 플랫폼

Volumn 28, Issue 20, 2012, Pages 2691-2692

PPfold 3.0: Fast RNA secondary structure prediction using phylogeny and auxiliary data

b CLC Bio ^* (Denmark)

Author keywords

[No Author keywords available]

Indexed keywords

RNA;

ALGORITHM; ARTICLE; CHEMISTRY; COMPUTER PROGRAM; CONFORMATION; PHYLOGENY; STATISTICAL MODEL;

ALGORITHMS; MODELS, STATISTICAL; NUCLEIC ACID CONFORMATION; PHYLOGENY; RNA; SOFTWARE;

EID: 84870455096 PISSN: 13674803 EISSN: 14602059 Source Type: Journal
DOI: 10.1093/bioinformatics/bts488 Document Type: Article

Times cited : (47)

References (9)

1
- 58549109608
- Accurate SHAPE-directed RNA structure determination
- Deigan, K.E. et al. (2009) Accurate SHAPE-directed RNA structure determination. Proc. Natl. Acad. Sei., 106, 97-102.
- (2009) Proc. Natl. Acad. Sei. , vol.106 , pp. 97-102
- Deigan, K.E.¹

2
- 13344262673
- A comprehensive comparison of comparative RNA structure prediction approaches
- Gardner, P.P. and Giegerich, R. (2004) A comprehensive comparison of comparative RNA structure prediction approaches. BMC Bioinformatics, 30, 140.
- (2004) BMC Bioinformatics , vol.30 , pp. 140
- Gardner, P.P.¹ Giegerich, R.²

3
- 0032796501
- RNA secondary structure prediction using stochastic context-free grammars and evolutionary history
- Knudsen, B. and Hein, J. (1999) RNA secondary structure prediction using stochastic context-free grammars and evolutionary history. Bioinformatics, 15, 446-454.
- (1999) Bioinformatics , vol.15 , pp. 446-454
- Knudsen, B.¹ Hein, J.²

4
- 0043123155
- Pfold: RNA secondary structure prediction using stochastic context-free grammars
- Knudsen, B. and Hein, J. (2003) Pfold: RNA secondary structure prediction using stochastic context-free grammars. Nucleic Acids Res., 31, 3423-3428.
- (2003) Nucleic Acids Res. , vol.31 , pp. 3423-3428
- Knudsen, B.¹ Hein, J.²

5
- 84934438960
- UNAFold: Software for nucleic acid folding and hybridization
- Markham, N.R. and Zuker, M. (2008) UNAFold: software for nucleic acid folding and hybridization. Methods Mol. Biol. (Clifton, NJ), 453, 3-31.
- (2008) Methods Mol. Biol. (Clifton, NJ) , vol.453 , pp. 3-31
- Markham, N.R.¹ Zuker, M.²

6
- 2442626706
- Incorporating chemical modificiation constraints into a dynamic programming algorithm for prediction of RNA secondary structure
- Mathews, D. et al. (2004) Incorporating chemical modificiation constraints into a dynamic programming algorithm for prediction of RNA secondary structure. Proc. Natl. Acad. Sei., 101, 7287-7292.
- (2004) Proc. Natl. Acad. Sei. , vol.101 , pp. 7287-7292
- Mathews, D.¹

7
- 79955101349
- Mulithreaded comparative RNA secondary structure prediction using stochastic context-free grammars
- Sükösd, Z. et al. (2011) Mulithreaded comparative RNA secondary structure prediction using stochastic context-free grammars. BMC Bioinformatics, 12:103.
- (2011) BMC Bioinformatics , vol.12 , pp. 103
- Sükösd, Z.¹

8
- 84861541877
- RNA folding with soft constraints: Reconciliation of probing data and thermodynamic secondary structure prediction
- Washietl, S. et al. (2012) RNA folding with soft constraints: Reconciliation of probing data and thermodynamic secondary structure prediction. Nucleic Acids Res., 40, 4261-4272.
- (2012) Nucleic Acids Res. , vol.40 , pp. 4261-4272
- Washietl, S.¹

9
- 67649371451
- Influence of nucleotide identity on ribose 2'-hydroxyl reactivity in RNA
- Wilkinson, A.C. et al. (2009) Influence of nucleotide identity on ribose 2'-hydroxyl reactivity in RNA. RNA, 15, 1314-1321.
- (2009) RNA , vol.15 , pp. 1314-1321
- Wilkinson, A.C.¹

* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.