-
1
-
-
0032498631
-
Amino-acid change in the Epstein-Barr-virus zebra protein in undifferentiated nasopharyngeal carcinomas from europe and North Africa
-
[CrossRef]
-
Grunewald, V.; Bonnet, M.; Boutin, S.; Yip, T.; Louzir, H.; Levrero, M.; Seigneurin, J.M.; Raphael, M.; Touitou, R.; Martel-Renoir, D., et al. Amino-acid change in the Epstein-Barr-virus zebra protein in undifferentiated nasopharyngeal carcinomas from europe and North Africa. Int. J. Cancer 1998, 75, 497–503. [CrossRef]
-
(1998)
Int. J. Cancer
, vol.75
, pp. 497-503
-
-
Grunewald, V.1
Bonnet, M.2
Boutin, S.3
Yip, T.4
Louzir, H.5
Levrero, M.6
Seigneurin, J.M.7
Raphael, M.8
Touitou, R.9
Martel-Renoir, D.10
-
2
-
-
0035807715
-
Tissue specific distribution of Epstein-Barr virus (EBV) BZLF1 gene variants in nasopharyngeal carcinoma (NPC) bearing patients
-
[CrossRef]
-
Sacaze, C.; Henry, S.; Icart, J.; Mariame, B. Tissue specific distribution of Epstein-Barr virus (EBV) BZLF1 gene variants in nasopharyngeal carcinoma (NPC) bearing patients. Virus Res. 2001, 81, 133–142. [CrossRef]
-
(2001)
Virus Res
, vol.81
, pp. 133-142
-
-
Sacaze, C.1
Henry, S.2
Icart, J.3
Mariame, B.4
-
3
-
-
33645231702
-
High frequency of latent membrane protein-1 30-bp deletion variant with specific single mutations in Epstein-Barr virus-associated nasopharyngeal carcinoma in Moroccan patients
-
[CrossRef] [PubMed]
-
Dardari, R.; Khyatti, M.; Cordeiro, P.; Odda, M.; ElGueddari, B.; Hassar, M.; Menezes, J. High frequency of latent membrane protein-1 30-bp deletion variant with specific single mutations in Epstein-Barr virus-associated nasopharyngeal carcinoma in Moroccan patients. Int. J. Cancer 2006, 118, 1977–1983. [CrossRef] [PubMed]
-
(2006)
Int. J. Cancer
, vol.118
, pp. 1977-1983
-
-
Dardari, R.1
Khyatti, M.2
Cordeiro, P.3
Odda, M.4
Elgueddari, B.5
Hassar, M.6
Menezes, J.7
-
4
-
-
33645912896
-
The 30-bp deletion of Epstein-Barr virus latent membrane protein-1 gene has no effect in nasopharyngeal carcinoma
-
[CrossRef] [PubMed]
-
Chang, K.P.; Hao, S.P.; Lin, S.Y.; Ueng, S.H.; Pai, P.C.; Tseng, C.K.; Hsueh, C.; Hsieh, M.S.; Yu, J.S.; Tsang, N.M. The 30-bp deletion of Epstein-Barr virus latent membrane protein-1 gene has no effect in nasopharyngeal carcinoma. Laryngoscope 2006, 116, 541–546. [CrossRef] [PubMed]
-
(2006)
Laryngoscope
, vol.116
, pp. 541-546
-
-
Chang, K.P.1
Hao, S.P.2
Lin, S.Y.3
Ueng, S.H.4
Pai, P.C.5
Tseng, C.K.6
Hsueh, C.7
Hsieh, M.S.8
Yu, J.S.9
Tsang, N.M.10
-
5
-
-
49849085698
-
Epstein-Barr virus genetic variation in Vietnamese patients with nasopharyngeal carcinoma
-
[CrossRef] [PubMed]
-
Nguyen-Van, D.; Ernberg, I.; Phan-Thi Phi, P.; Tran-Thi, C.; Hu, L. Epstein-Barr virus genetic variation in Vietnamese patients with nasopharyngeal carcinoma: Full-length analysis of LMP1. Virus Genes 2008, 37, 273–281. [CrossRef] [PubMed]
-
(2008)
Full-Length Analysis of LMP1. Virus Genes
, vol.37
, pp. 273-281
-
-
Nguyen-Van, D.1
Ernberg, I.2
Phan-Thi Phi, P.3
Tran-Thi, C.4
Hu, L.5
-
6
-
-
40749092346
-
Epstein-Barr virus latent membrane protein-1 (LMP-1) 30-bp deletion and Xho I-loss is associated with type III nasopharyngeal carcinoma in Malaysia
-
[CrossRef] [PubMed]
-
See, H.S.; Yap, Y.Y.; Yip, W.K.; Seow, H.F. Epstein-Barr virus latent membrane protein-1 (LMP-1) 30-bp deletion and Xho I-loss is associated with type III nasopharyngeal carcinoma in Malaysia. World J. Surg. Oncol. 2008, 6. [CrossRef] [PubMed]
-
(2008)
World J. Surg. Oncol
, pp. 6
-
-
See, H.S.1
Yap, Y.Y.2
Yip, W.K.3
Seow, H.F.4
-
7
-
-
0035235289
-
Epstein-Barr virus. The b95–8 strain map
-
[PubMed]
-
Farrell, P.J. Epstein-Barr virus. The b95–8 strain map. Methods Mol. Biol. 2001, 174, 3–12. [PubMed]
-
(2001)
Methods Mol. Biol
, vol.174
, pp. 3-12
-
-
Farrell, P.J.1
-
8
-
-
0019223714
-
Epstein-Barr virus (B95–8) DNA VII: Molecular cloning and detailed mapping
-
[CrossRef] [PubMed]
-
Dambaugh, T.; Beisel, C.; Hummel, M.; King, W.; Fennewald, S.; Cheung, A.; Heller, M.; Raab-Traub, N.; Kieff, E. Epstein-Barr virus (B95–8) DNA VII: Molecular cloning and detailed mapping. Proc. Natl. Acad. Sci. USA 1980, 77, 2999–3003. [CrossRef] [PubMed]
-
(1980)
Proc. Natl. Acad. Sci. USA
, vol.77
, pp. 2999-3003
-
-
Dambaugh, T.1
Beisel, C.2
Hummel, M.3
King, W.4
Fennewald, S.5
Cheung, A.6
Heller, M.7
Raab-Traub, N.8
Kieff, E.9
-
9
-
-
0343122772
-
Cloning and mapping of BamHi endonuclease fragments of DNA from the transforming B95–8 strain of Epstein-Barr virus
-
[CrossRef] [PubMed]
-
Skare, J.; Strominger, J.L. Cloning and mapping of BamHi endonuclease fragments of DNA from the transforming B95–8 strain of Epstein-Barr virus. Proc. Natl. Acad. Sci. USA 1980, 77, 3860–3864. [CrossRef] [PubMed]
-
(1980)
Proc. Natl. Acad. Sci. USA
, vol.77
, pp. 3860-3864
-
-
Skare, J.1
Strominger, J.L.2
-
10
-
-
0019828909
-
Molecular cloning of the complete Epstein-Barr virus genome as a set of overlapping restriction endonuclease fragments
-
[CrossRef] [PubMed]
-
Arrand, J.R.; Rymo, L.; Walsh, J.E.; Bjorck, E.; Lindahl, T.; Griffin, B.E. Molecular cloning of the complete Epstein-Barr virus genome as a set of overlapping restriction endonuclease fragments. Nucleic Acids Res. 1981, 9, 2999–3014. [CrossRef] [PubMed]
-
(1981)
Nucleic Acids Res
, vol.9
, pp. 2999-3014
-
-
Arrand, J.R.1
Rymo, L.2
Walsh, J.E.3
Bjorck, E.4
Lindahl, T.5
Griffin, B.E.6
-
11
-
-
0021254379
-
DNA sequence and expression of the b95–8 Epstein-Barr virus genome
-
[CrossRef] [PubMed]
-
Baer, R.; Bankier, A.T.; Biggin, M.D.; Deininger, P.L.; Farrell, P.J.; Gibson, T.J.; Hatfull, G.; Hudson, G.S.; Satchwell, S.C.; Seguin, C., et al. DNA sequence and expression of the b95–8 Epstein-Barr virus genome. Nature 1984, 310, 207–211. [CrossRef] [PubMed]
-
(1984)
Nature
, vol.310
, pp. 207-211
-
-
Baer, R.1
Bankier, A.T.2
Biggin, M.D.3
Deininger, P.L.4
Farrell, P.J.5
Gibson, T.J.6
Hatfull, G.7
Hudson, G.S.8
Satchwell, S.C.9
Seguin, C.10
-
12
-
-
0019954709
-
In permissively infected B95–8 cells
-
[PubMed]
-
Hummel, M.; Kieff, E. Epstein-Barr virus RNA. VIII. Viral RNA in permissively infected B95–8 cells. J. Virol. 1982, 43, 262–272. [PubMed]
-
(1982)
J. Virol
, vol.43
, pp. 262-272
-
-
Hummel, M.1
Kieff, E.2
Epstein-Barr Virus, R.3
Viral, R.4
-
13
-
-
0020615245
-
Major EB virus-specific cytoplasmic transcripts in a cellular clone of the HR-1 burkitt lymphoma line during latency and after induction of viral replicative cycle by phorbol esters
-
[CrossRef]
-
Weigel, R.; Miller, G. Major EB virus-specific cytoplasmic transcripts in a cellular clone of the HR-1 burkitt lymphoma line during latency and after induction of viral replicative cycle by phorbol esters. Virology 1983, 125, 287–298. [CrossRef]
-
(1983)
Virology
, vol.125
, pp. 287-298
-
-
Weigel, R.1
Miller, G.2
-
14
-
-
0038654144
-
Updated Epstein-Barr virus (EBV) DNA sequence and analysis of a promoter for the bart (CST, BARF0) RNAs of EBV
-
[CrossRef] [PubMed]
-
De Jesus, O.; Smith, P.R.; Spender, L.C.; Elgueta Karstegl, C.; Niller, H.H.; Huang, D.; Farrell, P.J. Updated Epstein-Barr virus (EBV) DNA sequence and analysis of a promoter for the bart (CST, BARF0) RNAs of EBV. J. Gen. Virol. 2003, 84, 1443–1450. [CrossRef] [PubMed]
-
(2003)
J. Gen. Virol
, vol.84
, pp. 1443-1450
-
-
De Jesus, O.1
Smith, P.R.2
Spender, L.C.3
Elgueta Karstegl, C.4
Niller, H.H.5
Huang, D.6
Farrell, P.J.7
-
15
-
-
29744445111
-
Genomic sequence analysis of Epstein-Barr virus strain GD1 from a nasopharyngeal carcinoma patient
-
[CrossRef] [PubMed]
-
Zeng, M.S.; Li, D.J.; Liu, Q.L.; Song, L.B.; Li, M.Z.; Zhang, R.H.; Yu, X.J.; Wang, H.M.; Ernberg, I.; Zeng, Y.X. Genomic sequence analysis of Epstein-Barr virus strain GD1 from a nasopharyngeal carcinoma patient. J. Virol. 2005, 79, 15323–15330. [CrossRef] [PubMed]
-
(2005)
J. Virol.
, vol.79
, pp. 15323-15330
-
-
Zeng, M.S.1
Li, D.J.2
Liu, Q.L.3
Song, L.B.4
Li, M.Z.5
Zhang, R.H.6
Yu, X.J.7
Wang, H.M.8
Ernberg, I.9
Zeng, Y.X.10
-
16
-
-
33744921669
-
The genome of Epstein-Barr virus type 2 strain AG876
-
[CrossRef] [PubMed]
-
Dolan, A.; Addison, C.; Gatherer, D.; Davison, A.J.; McGeoch, D.J. The genome of Epstein-Barr virus type 2 strain AG876. Virology 2006, 350, 164–170. [CrossRef] [PubMed]
-
(2006)
Virology
, vol.350
, pp. 164-170
-
-
Dolan, A.1
Addison, C.2
Gatherer, D.3
Davison, A.J.4
McGeoch, D.J.5
-
17
-
-
80055101385
-
Direct sequencing and characterization of a clinical isolate of Epstein-Barr virus from nasopharyngeal carcinoma tissue using next-generation sequencing technology
-
[CrossRef] [PubMed]
-
Liu, P.; Fang, X.; Feng, Z.; Guo, Y.M.; Peng, R.J.; Liu, T.; Huang, Z.; Feng, Y.; Sun, X.; Xiong, Z., et al. Direct sequencing and characterization of a clinical isolate of Epstein-Barr virus from nasopharyngeal carcinoma tissue using next-generation sequencing technology. J. Virol. 2011, 85, 11291–11299. [CrossRef] [PubMed]
-
(2011)
J. Virol
, vol.85
, pp. 11291-11299
-
-
Liu, P.1
Fang, X.2
Feng, Z.3
Guo, Y.M.4
Peng, R.J.5
Liu, T.6
Huang, Z.7
Feng, Y.8
Sun, X.9
Xiong, Z.10
-
18
-
-
84880859182
-
Complete genomic sequence of Epstein-Barr virus in nasopharyngeal carcinoma cell line C666-1
-
[CrossRef] [PubMed]
-
Tso, K.K.; Yip, K.Y.; Mak, C.K.; Chung, G.T.; Lee, S.D.; Cheung, S.T.; To, K.F.; Lo, K.W. Complete genomic sequence of Epstein-Barr virus in nasopharyngeal carcinoma cell line C666-1. Infect. Agent Cancer 2013, 8. [CrossRef] [PubMed]
-
(2013)
Infect. Agent Cancer
, vol.8
-
-
Tso, K.K.1
Yip, K.Y.2
Mak, C.K.3
Chung, G.T.4
Lee, S.D.5
Cheung, S.T.6
To, K.F.7
Lo, K.W.8
-
19
-
-
84887804054
-
Identification and characterization of EBV genomes in spontaneously immortalized human peripheral blood B lymphocytes by NGS technology
-
[CrossRef] [PubMed]
-
Lei, H.; Li, T.; Hung, G.C.; Li, B.; Tsai, S.; Lo, S.C. Identification and characterization of EBV genomes in spontaneously immortalized human peripheral blood B lymphocytes by NGS technology. BMC Genomics 2013, 14. [CrossRef] [PubMed]
-
(2013)
BMC Genomics
, pp. 14
-
-
Lei, H.1
Li, T.2
Hung, G.C.3
Li, B.4
Tsai, S.5
Lo, S.C.6
-
20
-
-
84902995038
-
Genome-wide analysis of wild-type Epstein-Barr virus genomes derived from healthy individuals of the 1000 genomes project
-
[CrossRef] [PubMed]
-
Santpere, G.; Darre, F.; Blanco, S.; Alcami, A.; Villoslada, P.; Mar Alba, M.; Navarro, A. Genome-wide analysis of wild-type Epstein-Barr virus genomes derived from healthy individuals of the 1000 genomes project. Genome Biol. Evol. 2014, 6, 846–860. [CrossRef] [PubMed]
-
(2014)
Genome Biol. Evol
, vol.6
, pp. 846-860
-
-
Santpere, G.1
Darre, F.2
Blanco, S.3
Alcami, A.4
Villoslada, P.5
Mar Alba, M.6
Navarro, A.7
-
21
-
-
84947616523
-
The full-length DNA sequence of epstein barr virus from a human gastric carcinoma cell line, SNU-719
-
[CrossRef] [PubMed]
-
Song, K.A.; Yang, S.D.; Hwang, J.; Kim, J.I.; Kang, M.S. The full-length DNA sequence of epstein barr virus from a human gastric carcinoma cell line, SNU-719. Virus Genes 2015, 51, 329–337. [CrossRef] [PubMed]
-
(2015)
Virus Genes
, vol.51
, pp. 329-337
-
-
Song, K.A.1
Yang, S.D.2
Hwang, J.3
Kim, J.I.4
Kang, M.S.5
-
22
-
-
84947901931
-
Epstein-Barr virus from Burkitt Lymphoma biopsies from Africa and South America share novel LMP-1 promoter and gene variations
-
[CrossRef] [PubMed]
-
Lei, H.; Li, T.; Li, B.; Tsai, S.; Biggar, R.J.; Nkrumah, F.; Neequaye, J.; Gutierrez, M.; Epelman, S.; Mbulaiteye, S.M., et al. Epstein-Barr virus from Burkitt Lymphoma biopsies from Africa and South America share novel LMP-1 promoter and gene variations. Sci. Rep. 2015, 5. [CrossRef] [PubMed]
-
(2015)
Sci. Rep
, vol.5
-
-
Lei, H.1
Li, T.2
Li, B.3
Tsai, S.4
Biggar, R.J.5
Nkrumah, F.6
Neequaye, J.7
Gutierrez, M.8
Epelman, S.9
Mbulaiteye, S.M.10
-
23
-
-
84871949044
-
Whole-genome sequencing of the Akata and Mutu Epstein-Barr virus strains
-
[CrossRef] [PubMed]
-
Lin, Z.; Wang, X.; Strong, M.J.; Concha, M.; Baddoo, M.; Xu, G.; Baribault, C.; Fewell, C.; Hulme, W.; Hedges, D., et al. Whole-genome sequencing of the Akata and Mutu Epstein-Barr virus strains. J. Virol. 2013, 87, 1172–1182. [CrossRef] [PubMed]
-
(2013)
J. Virol
, vol.87
, pp. 1172-1182
-
-
Lin, Z.1
Wang, X.2
Strong, M.J.3
Concha, M.4
Baddoo, M.5
Xu, G.6
Baribault, C.7
Fewell, C.8
Hulme, W.9
Hedges, D.10
-
24
-
-
84887024022
-
Spontaneous lytic replication and epitheliotropism define an Epstein-Barr virus strain found in carcinomas
-
[CrossRef] [PubMed]
-
Tsai, M.H.; Raykova, A.; Klinke, O.; Bernhardt, K.; Gartner, K.; Leung, C.S.; Geletneky, K.; Sertel, S.; Munz, C.; Feederle, R., et al. Spontaneous lytic replication and epitheliotropism define an Epstein-Barr virus strain found in carcinomas. Cell Rep. 2013, 5, 458–470. [CrossRef] [PubMed]
-
(2013)
Cell Rep
, vol.5
, pp. 458-470
-
-
Tsai, M.H.1
Raykova, A.2
Klinke, O.3
Bernhardt, K.4
Gartner, K.5
Leung, C.S.6
Geletneky, K.7
Sertel, S.8
Munz, C.9
Feederle, R.10
-
25
-
-
84860994450
-
Genomic sequencing and comparative analysis of Epstein-Barr virus genome isolated from primary nasopharyngeal carcinoma biopsy
-
[CrossRef] [PubMed]
-
Kwok, H.; Tong, A.H.; Lin, C.H.; Lok, S.; Farrell, P.J.; Kwong, D.L.; Chiang, A.K. Genomic sequencing and comparative analysis of Epstein-Barr virus genome isolated from primary nasopharyngeal carcinoma biopsy. PLoS ONE 2012, 7, e36939. [CrossRef] [PubMed]
-
(2012)
Plos ONE
, pp. 7
-
-
Kwok, H.1
Tong, A.H.2
Lin, C.H.3
Lok, S.4
Farrell, P.J.5
Kwong, D.L.6
Chiang, A.K.7
-
26
-
-
84928746237
-
Epstein-Barr virus genetic variation in lymphoblastoid cell lines derived from Kenyan pediatric population
-
[CrossRef] [PubMed]
-
Simbiri, K.O.; Smith, N.A.; Otieno, R.; Wohlford, E.E.; Daud, I.I.; Odada, S.P.; Middleton, F.; Rochford, R. Epstein-Barr virus genetic variation in lymphoblastoid cell lines derived from Kenyan pediatric population. PLoS ONE 2015, 10, e0125420. [CrossRef] [PubMed]
-
(2015)
Plos ONE
, pp. 10
-
-
Simbiri, K.O.1
Smith, N.A.2
Otieno, R.3
Wohlford, E.E.4
Daud, I.I.5
Odada, S.P.6
Middleton, F.7
Rochford, R.8
-
27
-
-
84906337219
-
Genomic diversity of Epstein-Barr virus genomes isolated from primary nasopharyngeal carcinoma biopsy samples
-
[CrossRef] [PubMed]
-
Kwok, H.; Wu, C.W.; Palser, A.L.; Kellam, P.; Sham, P.C.; Kwong, D.L.; Chiang, A.K. Genomic diversity of Epstein-Barr virus genomes isolated from primary nasopharyngeal carcinoma biopsy samples. J. Virol. 2014, 88, 10662–10672. [CrossRef] [PubMed]
-
(2014)
J. Virol
, vol.88
, pp. 10662-10672
-
-
Kwok, H.1
Wu, C.W.2
Palser, A.L.3
Kellam, P.4
Sham, P.C.5
Kwong, D.L.6
Chiang, A.K.7
-
28
-
-
84928580201
-
Genome diversity of Epstein-Barr virus from multiple tumor types and normal infection
-
[CrossRef] [PubMed]
-
Palser, A.L.; Grayson, N.E.; White, R.E.; Corton, C.; Correia, S.; Ba Abdullah, M.M.; Watson, S.J.; Cotten, M.; Arrand, J.R.; Murray, P.G., et al. Genome diversity of Epstein-Barr virus from multiple tumor types and normal infection. J. Virol. 2015, 89, 5222–5237. [CrossRef] [PubMed]
-
(2015)
J. Virol
, vol.89
, pp. 5222-5237
-
-
Palser, A.L.1
Grayson, N.E.2
White, R.E.3
Corton, C.4
Correia, S.5
Ba Abdullah, M.M.6
Watson, S.J.7
Cotten, M.8
Arrand, J.R.9
Murray, P.G.10
-
29
-
-
84959212709
-
Genome-wide analysis of Epstein-Barr virus (EBV) isolated from EBV-associated gastric carcinoma (EBVaGC)
-
[CrossRef]
-
Liu, Y.; Yang, W.; Pan, Y.; Ji, J.; Lu, Z.; Ke, Y. Genome-wide analysis of Epstein-Barr virus (EBV) isolated from EBV-associated gastric carcinoma (EBVaGC). Oncotarget 2015. [CrossRef]
-
(2015)
Oncotarget
-
-
Liu, Y.1
Yang, W.2
Pan, Y.3
Ji, J.4
Lu, Z.5
Ke, Y.6
-
30
-
-
0032822527
-
Nasopharyngeal carcinoma cell line (C666-1) consistently harbouring Epstein-Barr virus
-
[CrossRef]
-
Cheung, S.T.; Huang, D.P.; Hui, A.B.; Lo, K.W.; Ko, C.W.; Tsang, Y.S.; Wong, N.; Whitney, B.M.; Lee, J.C. Nasopharyngeal carcinoma cell line (C666-1) consistently harbouring Epstein-Barr virus. Int. J. Cancer 1999, 83, 121–126. [CrossRef]
-
(1999)
Int. J. Cancer
, vol.83
, pp. 121-126
-
-
Cheung, S.T.1
Huang, D.P.2
Hui, A.B.3
Lo, K.W.4
Ko, C.W.5
Tsang, Y.S.6
Wong, N.7
Whitney, B.M.8
Lee, J.C.9
-
31
-
-
0032493274
-
Propagation and recovery of intact, infectious Epstein-Barr virus from prokaryotic to human cells
-
[CrossRef] [PubMed]
-
Delecluse, H.J.; Hilsendegen, T.; Pich, D.; Zeidler, R.; Hammerschmidt, W. Propagation and recovery of intact, infectious Epstein-Barr virus from prokaryotic to human cells. Proc. Natl. Acad. Sci. USA 1998, 95, 8245–8250. [CrossRef] [PubMed]
-
(1998)
Proc. Natl. Acad. Sci. USA
, vol.95
, pp. 8245-8250
-
-
Delecluse, H.J.1
Hilsendegen, T.2
Pich, D.3
Zeidler, R.4
Hammerschmidt, W.5
-
32
-
-
0026207466
-
DNA polymerase fidelity and the polymerase chain reaction
-
[CrossRef] [PubMed]
-
Eckert, K.A.; Kunkel, T.A. DNA polymerase fidelity and the polymerase chain reaction. PCR Methods Appl. 1991, 1, 17–24. [CrossRef] [PubMed]
-
(1991)
PCR Methods Appl
, vol.1
, pp. 17-24
-
-
Eckert, K.A.1
Kunkel, T.A.2
-
33
-
-
0026463371
-
Rapid isolation of desired sequences from lone linker PCR amplified cDNA mixtures: Application to identification and recovery of expressed sequences in cloned genomic DNA
-
[CrossRef] [PubMed]
-
Abe, K. Rapid isolation of desired sequences from lone linker PCR amplified cDNA mixtures: Application to identification and recovery of expressed sequences in cloned genomic DNA. Mamm. Genome 1992, 2, 252–259. [CrossRef] [PubMed]
-
(1992)
Mamm. Genome
, vol.2
, pp. 252-259
-
-
Abe, K.1
-
34
-
-
0142092536
-
DNA enrichment by allele-specific hybridization (DEASH): A novel method for haplotyping and for detecting low-frequency base substitutional variants and recombinant DNA molecules
-
[CrossRef] [PubMed]
-
Jeffreys, A.J.; May, C.A. DNA enrichment by allele-specific hybridization (DEASH): A novel method for haplotyping and for detecting low-frequency base substitutional variants and recombinant DNA molecules. Genome Res. 2003, 13, 2316–2324. [CrossRef] [PubMed]
-
(2003)
Genome Res
, vol.13
, pp. 2316-2324
-
-
Jeffreys, A.J.1
May, C.A.2
-
35
-
-
80054746492
-
Exome sequencing as a tool for mendelian disease gene discovery
-
[CrossRef] [PubMed]
-
Bamshad, M.J.; Ng, S.B.; Bigham, A.W.; Tabor, H.K.; Emond, M.J.; Nickerson, D.A.; Shendure, J. Exome sequencing as a tool for mendelian disease gene discovery. Nat. Rev. Genet. 2011, 12, 745–755. [CrossRef] [PubMed]
-
(2011)
Nat. Rev. Genet
, vol.12
, pp. 745-755
-
-
Bamshad, M.J.1
Ng, S.B.2
Bigham, A.W.3
Tabor, H.K.4
Emond, M.J.5
Nickerson, D.A.6
Shendure, J.7
-
36
-
-
84859246557
-
Specific capture and whole-genome sequencing of viruses from clinical samples
-
[CrossRef] [PubMed]
-
Depledge, D.P.; Palser, A.L.; Watson, S.J.; Lai, I.Y.; Gray, E.R.; Grant, P.; Kanda, R.K.; Leproust, E.; Kellam, P.; Breuer, J. Specific capture and whole-genome sequencing of viruses from clinical samples. PLoS ONE 2011, 6, e27805. [CrossRef] [PubMed]
-
(2011)
Plos ONE
, pp. 6
-
-
Depledge, D.P.1
Palser, A.L.2
Watson, S.J.3
Lai, I.Y.4
Gray, E.R.5
Grant, P.6
Kanda, R.K.7
Leproust, E.8
Kellam, P.9
Breuer, J.10
-
37
-
-
62349130698
-
Ultrafast and memory-efficient alignment of short DNA sequences to the human genome
-
[CrossRef] [PubMed]
-
Langmead, B.; Trapnell, C.; Pop, M.; Salzberg, S.L. Ultrafast and memory-efficient alignment of short DNA sequences to the human genome. Genome Biol. 2009, 10. [CrossRef] [PubMed]
-
(2009)
Genome Biol
, pp. 10
-
-
Langmead, B.1
Trapnell, C.2
Pop, M.3
Salzberg, S.L.4
-
38
-
-
67650711615
-
SOAP2: An improved ultrafast tool for short read alignment
-
[CrossRef] [PubMed]
-
Li, R.; Yu, C.; Li, Y.; Lam, T.W.; Yiu, S.M.; Kristiansen, K.; Wang, J. SOAP2: An improved ultrafast tool for short read alignment. Bioinformatics 2009, 25, 1966–1967. [CrossRef] [PubMed]
-
(2009)
Bioinformatics
, vol.25
, pp. 1966-1967
-
-
Li, R.1
Yu, C.2
Li, Y.3
Lam, T.W.4
Yiu, S.M.5
Kristiansen, K.6
Wang, J.7
-
39
-
-
67649884743
-
Fast and accurate short read alignment with burrows-wheeler transform
-
[CrossRef] [PubMed]
-
Li, H.; Durbin, R. Fast and accurate short read alignment with burrows-wheeler transform. Bioinformatics 2009, 25, 1754–1760. [CrossRef] [PubMed]
-
(2009)
Bioinformatics
, vol.25
, pp. 1754-1760
-
-
Li, H.1
Durbin, R.2
-
40
-
-
0041885229
-
Solution structure of the BHRF1 protein from Epstein-Barr virus, a homolog of human BCL-2
-
[CrossRef] [PubMed]
-
Huang, Q.; Petros, A.M.; Virgin, H.W.; Fesik, S.W.; Olejniczak, E.T. Solution structure of the BHRF1 protein from Epstein-Barr virus, a homolog of human BCL-2. J. Mol. Biol. 2003, 332, 1123–1130. [CrossRef] [PubMed]
-
(2003)
J. Mol. Biol
, vol.332
, pp. 1123-1130
-
-
Huang, Q.1
Petros, A.M.2
Virgin, H.W.3
Fesik, S.W.4
Olejniczak, E.T.5
-
41
-
-
0027080601
-
The interleukin-10 homolog encoded by Epstein-Barr virus enhances the reactivation of virus-specific cytotoxic T cell and HLA-unrestricted killer cell responses
-
[CrossRef]
-
Stewart, J.P.; Rooney, C.M. The interleukin-10 homolog encoded by Epstein-Barr virus enhances the reactivation of virus-specific cytotoxic T cell and HLA-unrestricted killer cell responses. Virology 1992, 191, 773–782. [CrossRef]
-
(1992)
Virology
, vol.191
, pp. 773-782
-
-
Stewart, J.P.1
Rooney, C.M.2
-
42
-
-
0031955518
-
Base-calling of automated sequencer traces using phred. I. Accuracy assessment
-
[CrossRef] [PubMed]
-
Ewing, B.; Hillier, L.; Wendl, M.C.; Green, P. Base-calling of automated sequencer traces using phred. I. Accuracy assessment. Genome Res. 1998, 8, 175–185. [CrossRef] [PubMed]
-
(1998)
Genome Res
, vol.8
, pp. 175-185
-
-
Ewing, B.1
Hillier, L.2
Wendl, M.C.3
Green, P.4
-
43
-
-
0031978181
-
Base-calling of automated sequencer traces using phred. II. Error probabilities
-
[CrossRef] [PubMed]
-
Ewing, B.; Green, P. Base-calling of automated sequencer traces using phred. II. Error probabilities. Genome Res. 1998, 8, 186–194. [CrossRef] [PubMed]
-
(1998)
Genome Res
, vol.8
, pp. 186-194
-
-
Ewing, B.1
Green, P.2
-
44
-
-
84893443187
-
An extensive evaluation of read trimming effects on illumina NGS data analysis
-
[CrossRef] [PubMed]
-
Del Fabbro, C.; Scalabrin, S.; Morgante, M.; Giorgi, F.M. An extensive evaluation of read trimming effects on illumina NGS data analysis. PLoS ONE 2013, 8, e85024. [CrossRef] [PubMed]
-
(2013)
Plos ONE
, pp. 8
-
-
Del Fabbro, C.1
Scalabrin, S.2
Morgante, M.3
Giorgi, F.M.4
-
45
-
-
43149115851
-
Velvet: Algorithms for de novo short read assembly using de Bruijn graphs
-
[CrossRef] [PubMed]
-
Zerbino, D.R.; Birney, E. Velvet: Algorithms for de novo short read assembly using de Bruijn graphs. Genome Res. 2008, 18, 821–829. [CrossRef] [PubMed]
-
(2008)
Genome Res
, vol.18
, pp. 821-829
-
-
Zerbino, D.R.1
Birney, E.2
-
46
-
-
0029312687
-
New algorithm for DNA sequence assembly
-
[CrossRef] [PubMed]
-
Idury, R.M.; Waterman, M.S. A new algorithm for DNA sequence assembly. J. Comput. Biol. 1995, 2, 291–306. [CrossRef] [PubMed]
-
(1995)
J. Comput. Biol
, vol.2
, pp. 291-306
-
-
Idury, R.M.1
Waterman, M.2
-
47
-
-
78649294100
-
Optimization of de novo transcriptome assembly from next-generation sequencing data
-
[CrossRef] [PubMed]
-
Surget-Groba, Y.; Montoya-Burgos, J.I. Optimization of de novo transcriptome assembly from next-generation sequencing data. Genome Res. 2010, 20, 1432–1440. [CrossRef] [PubMed]
-
(2010)
Genome Res
, vol.20
, pp. 1432-1440
-
-
Surget-Groba, Y.1
Montoya-Burgos, J.I.2
-
48
-
-
84860771820
-
SPAdes: A new genome assembly algorithm and its applications to single-cell sequencing
-
[CrossRef] [PubMed]
-
Bankevich, A.; Nurk, S.; Antipov, D.; Gurevich, A.A.; Dvorkin, M.; Kulikov, A.S.; Lesin, V.M.; Nikolenko, S.I.; Pham, S.; Prjibelski, A.D., et al. SPAdes: A new genome assembly algorithm and its applications to single-cell sequencing. J. Comput. Biol. 2012, 19, 455–477. [CrossRef] [PubMed]
-
(2012)
J. Comput. Biol.
, vol.19
, pp. 455-477
-
-
Bankevich, A.1
Nurk, S.2
Antipov, D.3
Gurevich, A.A.4
Dvorkin, M.5
Kulikov, A.S.6
Lesin, V.M.7
Nikolenko, S.I.8
Pham, S.9
Prjibelski, A.D.10
-
49
-
-
84913554630
-
One chromosome, one contig: Complete microbial genomes from long-read sequencing and assembly
-
[CrossRef] [PubMed]
-
Koren, S.; Phillippy, A.M. One chromosome, one contig: Complete microbial genomes from long-read sequencing and assembly. Curr. Opin. Microbiol. 2015, 23, 110–120. [CrossRef] [PubMed]
-
(2015)
Curr. Opin. Microbiol
, vol.23
, pp. 110-120
-
-
Koren, S.1
Phillippy, A.M.2
|