Allergy associations with the adult fecal microbiota: Analysis of the American Gut Project

EBioMedicine

Volumn 3, Issue , 2016, Pages 172-179

  Hua, Xing ^a   Goedert, James J ^a   Pu, Angela ^a   Yu, Guoqin ^a   Shi, Jianxin ^a  

^a NATIONAL CANCER INSTITUTE   (United States)

Author keywords

Adults; Allergy; Feces; Human microbiome; Hygiene hypothesis

Indexed keywords

PROBIOTIC AGENT; RNA 16S; VITAMIN;

ADULT; ALLERGY; ASTHMA; BACTEROIDALES; BACTEROIDES; BEE STING; BREVUNDIMONAS DIMINUTA; CLOSTRIDIALES; DANDER; DYSBIOSIS; ECZEMA; FECES MICROFLORA; FEMALE; GENE SEQUENCE; GENETIC TRAIT; HUMAN; MAJOR CLINICAL STUDY; MALE; MICROBIAL COMMUNITY; MICROBIOME; NONHUMAN; NOTE; NUT; PEANUT; PHENOTYPE; PRINCIPAL COORDINATE ANALYSIS; PRIORITY JOURNAL; QUESTIONNAIRE; SEASONAL VARIATION; SENSITIVITY ANALYSIS; SHELLFISH; TAXONOMY; AGED; BIODIVERSITY; FECES; GENETICS; HYPERSENSITIVITY; INTESTINE FLORA; METAGENOME; METAGENOMICS; MICROBIOLOGY; MIDDLE AGED; NUCLEIC ACID DATABASE; ODDS RATIO; PROCEDURES; RISK;

ADULT; AGED; BIODIVERSITY; DATABASES, NUCLEIC ACID; FECES; FEMALE; GASTROINTESTINAL MICROBIOME; HUMANS; HYPERSENSITIVITY; MALE; METAGENOME; METAGENOMICS; MIDDLE AGED; ODDS RATIO; RISK; RNA, RIBOSOMAL, 16S; SURVEYS AND QUESTIONNAIRES;

EID: 84958865948     PISSN: None     EISSN: 23523964     Source Type: Journal    
DOI: 10.1016/j.ebiom.2015.11.038     Document Type: Article

References (54)

1. Abrahamsson T.R., Jakobsson H.E., Andersson A.F., Bjorksten B., Engstrand L., Jenmalm M.C. Low diversity of the gut microbiota in infants with atopic eczema. J. Allergy Clin. Immunol. 2012, 129:434-440. (440 e431-432).
2. Abrahamsson T.R., Jakobsson H.E., Andersson A.F., Bjorksten B., Engstrand L., Jenmalm M.C. Low gut Microbiota diversity in early infancy precedes asthma at school age. Clin. Exp. Allergy 2014, 44:842-850.
3. Arrieta M.C., Stiemsma L.T., Amenyogbe N., Brown E.M., Finlay B. The intestinal microbiome in early life: health and disease. Front. Immunol. 2014, 5:427.
4. Birnbaum J., Vervloet D., Charpin D. Atopy and systemic reactions to hymenoptera stings. Allergy Proc. 1994, 15:49-52.
5. Bisgaard H., Li N., Bonnelykke K., Chawes B.L., Skov T., Paludan-Muller G., Stokholm J., Smith B., Krogfelt K.A. Reduced diversity of the intestinal microbiota during infancy is associated with increased risk of allergic disease at school age. J. Allergy Clin. Immunol. 2011, 128:646-652. (e641-645).
6. Bowman L.M., Holt P.G. Selective enhancement of systemic th1 immunity in immunologically immature rats with an orally administered bacterial extract. Infect. Immun. 2001, 69:3719-3727.
7. Caporaso J.G., Kuczynski J., Stombaugh J., Bittinger K., Bushman F.D., Costello E.K., Fierer N., Pena A.G., Goodrich J.K., Gordon J.I., et al. QIIME allows analysis of high-throughput community sequencing data. Nat. Methods 2010, 7:335-336.
8. Chang E.T., Montgomery S.M., Richiardi L., Ehlin A., Ekbom A., Lambe M. Number of siblings and risk of Hodgkin's lymphoma. Cancer Epidemiol. Biomark. Prev. 2004, 13:1236-1243.
9. Costa D.J., Marteau P., Amouyal M., Poulsen L.K., Hamelmann E., Cazaubiel M., Housez B., Leuillet S., Stavnsbjerg M., Molimard P., et al. Efficacy and safety of the probiotic Lactobacillus paracasei LP-33 in allergic rhinitis: a double-blind, randomized, placebo-controlled trial (GA2LEN Study). Eur. J. Clin. Nutr. 2014, 68:602-607.
10. Cozen W., Cerhan J.R., Martinez-Maza O., Ward M.H., Linet M., Colt J.S., Davis S., Severson R.K., Hartge P., Bernstein L. The effect of atopy, childhood crowding, and other immune-related factors on non-Hodgkin lymphoma risk. Cancer Causes Control 2007, 18:821-831.
11. Cozen W., Yu G., Gail M.H., Ridaura V.K., Nathwani B.N., Hwang A.E., Hamilton A.S., Mack T.M., Gordon J.I., Goedert J.J. Fecal microbiota diversity in survivors of adolescent/young adult Hodgkin lymphoma: a study of twins. Br. J. Cancer 2013.
12. Dharmage S.C., Lodge C.L., Matheson M.C., Campbell B., Lowe A.J. Exposure to cats: update on risks for sensitization and allergic diseases. Curr. Allergy Asthma Rep. 2012, 12:413-423.
13. Ege M.J., Mayer M., Normand A.C., Genuneit J., Cookson W.O., Braun-Fahrlander C., Heederik D., Piarroux R., von Mutius E., Group, G.T.S. Exposure to environmental microorganisms and childhood asthma. N. Engl. J. Med. 2011, 364:701-709.
14. Eyerich K., Novak N. Immunology of atopic eczema: overcoming the Th1/Th2 paradigm. Allergy 2013, 68:974-982.
15. Fernandez J., Blanca M., Soriano V., Sanchez J., Juarez C. Epidemiological study of the prevalence of allergic reactions to Hymenoptera in a rural population in the Mediterranean area. Clin. Exp. Allergy 1999, 29:1069-1074.
16. Fujimura K.E., Lynch S.V. Microbiota in allergy and asthma and the emerging relationship with the gut microbiome. Cell Host Microbe 2015, 17:592-602.
17. Gibson P.G., Henry R.L., Shah S., Powell H., Wang H. Migration to a western country increases asthma symptoms but not eosinophilic airway inflammation. Pediatr. Pulmonol. 2003, 36:209-215.
18. Goedert J.J., Hua X., Yu G., Shi J. Diversity and composition of the adult fecal microbiome associated with history of cesarean birth or appendectomy: analysis of the American Gut Project. EBioMedicine 2014, 1:167-172.
19. Golden D.B. Advances in diagnosis and management of insect sting allergy. Ann. Allergy Asthma Immunol. 2013, 111:84-89.
20. Golden D.B., Marsh D.G., Kagey-Sobotka A., Freidhoff L., Szklo M., Valentine M.D., Lichtenstein L.M. Epidemiology of insect venom sensitivity. JAMA 1989, 262:240-244.
21. Grulich A.E., Vajdic C.M., Kaldor J.M., Hughes A.M., Kricker A., Fritschi L., Turner J.J., Milliken S., Benke G., Armstrong B.K. Birth order, atopy, and risk of non-Hodgkin lymphoma. J. Natl. Cancer Inst. 2005, 97:587-594.
22. Gutensohn N., Li F.P., Johnson R.E., Cole P. Hodgkin's disease, tonsillectomy and family size. N. Engl. J. Med. 1975, 292:22-25.
23. Hanifin J.M., Reed M.L., Eczema P., Impact Working G. A population-based survey of eczema prevalence in the United States. Dermatitis 2007, 18:82-91.
24. Hanski I., von Hertzen L., Fyhrquist N., Koskinen K., Torppa K., Laatikainen T., Karisola P., Auvinen P., Paulin L., Makela M.J., et al. Environmental biodiversity, human microbiota, and allergy are interrelated. Proc. Natl. Acad. Sci. U. S. A. 2012, 109:8334-8339.
25. Hoppin J.A., Jaramillo R., Salo P., Sandler D.P., London S.J., Zeldin D.C. Questionnaire predictors of atopy in a US population sample: findings from the National Health and Nutrition Examination Survey, 2005-2006. Am. J. Epidemiol. 2011, 173:544-552.
26. Hrncir T., Stepankova R., Kozakova H., Hudcovic T., Tlaskalova-Hogenova H. Gut microbiota and lipopolysaccharide content of the diet influence development of regulatory t cells: studies in germ-free mice. BMC Immunol. 2008, 9:65.
27. Jakobsson H.E., Abrahamsson T.R., Jenmalm M.C., Harris K., Quince C., Jernberg C., Bjorksten B., Engstrand L., Andersson A.F. Decreased gut microbiota diversity, delayed bacteroidetes colonisation and reduced Th1 responses in infants delivered by caesarean section. Gut 2014, 63:559-566.
28. Kalliomaki M., Kirjavainen P., Eerola E., Kero P., Salminen S., Isolauri E. Distinct patterns of neonatal gut microflora in infants in whom atopy was and was not developing. J. Allergy Clin. Immunol. 2001, 107:129-134.
29. Kolokotroni O., Middleton N., Gavatha M., Lamnisos D., Priftis K.N., Yiallouros P.K. Asthma and atopy in children born by caesarean section: effect modification by family history of allergies - a population based cross-sectional study. BMC Pediatr. 2012, 12:179.
30. Liu A.H., Jaramillo R., Sicherer S.H., Wood R.A., Bock S.A., Burks A.W., Massing M., Cohn R.D., Zeldin D.C. National prevalence and risk factors for food allergy and relationship to asthma: results from the National Health and Nutrition Examination Survey 2005-2006. J. Allergy Clin. Immunol. 2010, 126:798-806. (e713).
31. Mack T.M., Norman J.E., Rappaport E., Cozen W. Childhood determination of Hodgkin lymphoma among U.S. servicemen. Cancer Epidemiol. Biomark. Prev. 2015.
32. Odamaki T., Xiao J.Z., Iwabuchi N., Sakamoto M., Takahashi N., Kondo S., Iwatsuki K., Kokubo S., Togashi H., Enomoto T., et al. Fluctuation of fecal microbiota in individuals with Japanese cedar pollinosis during the pollen season and influence of probiotic intake. J. Investig. Allergol. Clin. Immunol. 2007, 17:92-100.
33. Ohnmacht C., Park J.H., Cording S., Wing J.B., Atarashi K., Obata Y., Gaboriau-Routhiau V., Marques R., Dulauroy S., Fedoseeva M., et al. Mucosal immunology. The microbiota regulates type 2 immunity through RORgammat(+) T cells. Science 2015, 349:989-993.
34. Olszak T., An D., Zeissig S., Vera M.P., Richter J., Franke A., Glickman J.N., Siebert R., Baron R.M., Kasper D.L., et al. Microbial exposure during early life has persistent effects on natural killer T cell function. Science 2012, 336:489-493.
35. Ownby D.R., Johnson C.C., Peterson E.L. Exposure to dogs and cats in the first year of life and risk of allergic sensitization at 6 to 7 years of age. JAMA 2002, 288:963-972.
36. Penders J., Stobberingh E.E., Thijs C., Adams H., Vink C., van Ree R., van den Brandt P.A. Molecular fingerprinting of the intestinal microbiota of infants in whom atopic eczema was or was not developing. Clin. Exp. Allergy 2006, 36:1602-1608.
37. Penders J., Gerhold K., Thijs C., Zimmermann K., Wahn U., Lau S., Hamelmann E. New insights into the hygiene hypothesis in allergic diseases: mediation of sibling and birth mode effects by the gut microbiota. Gut Microbes 2014, 5:239-244.
38. Pistiner M., Gold D.R., Abdulkerim H., Hoffman E., Celedon J.C. Birth by cesarean section, allergic rhinitis, and allergic sensitization among children with a parental history of atopy. J. Allergy Clin. Immunol. 2008, 122:274-279.
39. Salo P.M., Calatroni A., Gergen P.J., Hoppin J.A., Sever M.L., Jaramillo R., Arbes S.J., Zeldin D.C. Allergy-related outcomes in relation to serum IgE: results from the National Health and Nutrition Examination Survey 2005-2006. J. Allergy Clin. Immunol. 2011, 127:1226-1235. (e1227).
40. Sheikh A., Smeeth L., Hubbard R. There is no evidence of an inverse relationship between TH2-mediated atopy and TH1-mediated autoimmune disorders: lack of support for the hygiene hypothesis. J. Allergy Clin. Immunol. 2003, 111:131-135.
41. Siegmund D., Yakir B., Zhang N.R. Detecting simultaneous variant intervals in aligned sequences. Ann. Appl. Stat. 2011, 5:645-668.
42. Simpson A., Custovic A. Pets and the development of allergic sensitization. Curr. Allergy Asthma Rep. 2005, 5:212-220.
43. Singh A., Hacini-Rachinel F., Gosoniu M.L., Bourdeau T., Holvoet S., Doucet-Ladeveze R., Beaumont M., Mercenier A., Nutten S. Immune-modulatory effect of probiotic Bifidobacterium lactis NCC2818 in individuals suffering from seasonal allergic rhinitis to grass pollen: an exploratory, randomized, placebo-controlled clinical trial. Eur. J. Clin. Nutr. 2013, 67:161-167.
44. Smedby K.E., Hjalgrim H., Chang E.T., Rostgaard K., Glimelius B., Adami H.O., Melbye M. Childhood social environment and risk of non-Hodgkin lymphoma in adults. Cancer Res. 2007, 67:11074-11082.
45. Strachan D.P. Family size, infection and atopy: the first decade of the "hygiene hypothesis". Thorax 2000, 55(Suppl. 1):S2-10.
46. Teo S.M., Mok D., Pham K., Kusel M., Serralha M., Troy N., Holt B.J., Hales B.J., Walker M.L., Hollams E., et al. The infant nasopharyngeal microbiome impacts severity of lower respiratory infection and risk of asthma development. Cell Host Microbe 2015, 17:704-715.
47. Thavagnanam S., Fleming J., Bromley A., Shields M.D., Cardwell C.R. A meta-analysis of the association between caesarean section and childhood asthma. Clin. Exp. Allergy 2008, 38:629-633.
48. Tobias A., Soriano J.B., Chinn S., Anto J.M., Sunyer J., Burney P., European Community Respiratory Health, S. Symptoms of asthma, bronchial responsiveness and atopy in immigrants and emigrants in Europe. European Community Respiratory Health Survey. Eur. Respir. J. 2001, 18:459-465.
49. Visness C.M., London S.J., Daniels J.L., Kaufman J.S., Yeatts K.B., Siega-Riz A.M., Liu A.H., Calatroni A., Zeldin D.C. Association of obesity with IgE levels and allergy symptoms in children and adolescents: results from the National Health and Nutrition Examination Survey 2005-2006. J. Allergy Clin. Immunol. 2009, 123:1163-1169. (1169 e1161-1164).
50. Wegienka G., Johnson C.C., Havstad S., Ownby D.R., Nicholas C., Zoratti E.M. Lifetime dog and cat exposure and dog- and cat-specific sensitization at age 18 years. Clin. Exp. Allergy 2011, 41:979-986.
51. Westergaard T., Melbye M., Pedersen J.B., Frisch M., Olsen J.H., Andersen P.K. Birth order, sibship size and risk of Hodgkin's disease in children and young adults: a population-based study of 31 million person-years. Int. J. Cancer 1997, 72:977-981.
52. Wood R.A., Camargo C.A., Lieberman P., Sampson H.A., Schwartz L.B., Zitt M., Collins C., Tringale M., Wilkinson M., Boyle J., et al. Anaphylaxis in America: the prevalence and characteristics of anaphylaxis in the United States. J. Allergy Clin. Immunol. 2014, 133:461-467.
53. Yatsunenko T., Rey F.E., Manary M.J., Trehan I., Dominguez-Bello M.G., Contreras M., Magris M., Hidalgo G., Baldassano R.N., Anokhin A.P., et al. Human gut microbiome viewed across age and geography. Nature 2012, 486:222-227.
54. Zhao N., Chen J., Carroll I.M., Ringel-Kulka T., Epstein M.P., Zhou H., Zhou J.J., Ringel Y., Li H., Wu M.C. Testing in microbiome-profiling studies with MiRKAT, the microbiome regression-based kernel association test. Am. J. Hum. Genet. 2015, 96:797-807.